RNA id: XM_036971821.1


Basic Information

Item Value
RNA id XM_036971821.1
length 1968
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110487937
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 12425043 ~ 12472248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCGGCGCCACGACAGATTGAGAAAGATtgtttCTGTGTTGATTTGGACCATACATATATGGCGTATGTGAGCGTCAGTGGAGACTTCTGCCAGGCACAGCACCTCGCCTTCGTGGACAAGTGAATCGTCCGCCCCCCTCAGGACTACGCTACCCAGAAGCCCCCCTGAAGCCAGCACACTGGGAACCTCTGTCTCTTCCAACGTCCCCTGGGATATCGCGTAGTCCAAGGCCAAATTGCCCAGCTCTGTCCCCTGAGCGGCCAATAAGAAAACTGCCTAGTTCTCCTCTGCTTCCTGCTTTCTCTCCCAGAAGCCAATCACATACCACTCTCCTGAATGGGCCGTCTCGCCAACATGAACCGCCCTGCAGCAGTGGAGATTACCTACGAGGGCATGAGGTTCCTCATCACACACAACCCCACCAACGCCACGCTCAACAAGTTCACTGAGgAGCTGAAGAAGTTTGAGGTGAACACGCTGGTGAGAGTGTGTGACGCCACCTACGACAAGGCCCCAGTGGAGAAGGAGGGGATTGAAGTTATGGACTGGCCCTTTGATGATGGTGCCCCGCCCCCCACCAAGATAGTGGACGACTGGTTGAACCTGCTTAAGACCAAGTTCAGAGGCGAGCCTGGCTGCTGTATTGCCGTGCACTGTGTGGCGGGGCTGGGTCGAGCTCCAGTCATGGTGGCCTTAGCGCTGATTGAAACTGGGATGAAGTATGAGGATGCGGTGCAGTTCATACGACAgaAGAGACGTGGAGCATTCAACTCCAAGCAGCTTCTTTACCTGGAGAAATACAGACCCAAGATGCGTCTGCGGTTCAAGGATGCCAACGGCCCCAACTGTTGTGTCCAGTAAAGTGTCTGTGTGCAGCGTCTCAAGAATACAGCAGCTAGTGGGAACAACCTTATTCCAACCAAGGGGAGAGAGAACTATCAGTAATTATTGTGATTTGTTACCACTGAGACATGGCTAATTGATCACAGAATCAATTAATCAACGAGCGAATGATTACATTTGAATGAATGCAAATCTAGGGGTCCAACCAGCCGAACCAATGAACAAGAAGGTCAACGCACACAGATATAGGCCCGCCTCCAAGTTACCAGTGTCATAACACGGGCACATAATTTTTTCAGCATTTTTATTTTCAGCTTTGAATCATGGGATAGctctttattttttacacctaCATGGAAGTTTAACAAACAAAATCTACAAATGTTAAAATGGTATCAATATTGACgatttgtttatttttctatTAATGATATGAATTATGGATTTGCCCAGGGTTATGTaccttttttttaatgtttgtaAACCCTTCAGCACATTAGAAGAAAAATGACAAATTACTGTCCATTTGGCTATTGATGTATTTTTGTACAACACAAAATCTCTGAAAATGCAGTAATGTTTTTCTCTCTACCCCACGTGCTTGATGTCACTTTTTAATTACTGGGTTGGCTGGGTTTTAAATATGTCCGCTGTATTTATTCACTGGCTGTAACTAGCAAGGCAGTCTGGGGTTGGGGGCAAGGACACTTTTCTGTTTCTCATTTTATTCTAGAGCCATGTTTTCATTTTCTTAAAATTATTAAATACAATCTTGCGGGAGTGCAATATTCAGTCCACCTCGGAAAAGACCCCAAACCCCCTTATGACCATCACACACAGAGCCAGTTTCACAGGAAGACACTTGGCTAGTCTTTACTGTAGGTACTTTTTTTCCATTCACCAAGGCTGCTTACTGGGTTTCCAATAGGACTTTCCTACAATGactgtgcatgcacacacacacatgcgcgcacacacacaatgatCTCAACCGTTAATCCCTAGTCTCACTCTGAAGGAAAAGAAAGCAAATGGTCAGTTTCTTTTTTATCATCTTACCCATTTTGAAGATATCCTCAATTCCTATTGGTTTTAAAAGAAATAAAGAAATGGAAATAAGATT

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function

KEGG:

id description
K18041 PTP4A; protein tyrosine phosphatase type IVA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2627819 lncRNA upstream 35453 12417942 ~ 12418209 (+) True G2297096
TU2627822 lncRNA upstream 77922 12375175 ~ 12375740 (+) True G2297098
TU2627801 lncRNA upstream 108931 12343036 ~ 12344731 (+) True G2297082
TU2627789 lncRNA upstream 131596 12321510 ~ 12322066 (+) True G2297072
TU2627760 lncRNA upstream 151752 12239268 ~ 12301910 (+) True G2297045
TU2627858 lncRNA downstream 6736 12478984 ~ 12482894 (+) True G2297133
TU2627871 lncRNA downstream 23772 12496020 ~ 12498578 (+) True G2297146
TU2627891 lncRNA downstream 58242 12530490 ~ 12569590 (+) True G2297165
TU2627903 lncRNA downstream 80442 12552690 ~ 12556516 (+) False G2297177
TU2627904 lncRNA downstream 80442 12552690 ~ 12556516 (+) False G2297177
XM_021559856.2 mRNA upstream 39513 12322871 ~ 12414149 (+) False col8a2
XR_005041309.1 mRNA upstream 39513 12322871 ~ 12414149 (+) True col8a2
XM_021559842.2 mRNA upstream 299925 12146678 ~ 12153737 (+) True LOC110487924
XM_036970838.1 mRNA upstream 341201 11983293 ~ 12112461 (+) False LOC110489380
XM_036970609.1 mRNA downstream 801972 13274220 ~ 13491588 (+) True LOC118946451
XM_036970608.1 mRNA downstream 1035340 13507588 ~ 13724989 (+) False LOC110487938
XM_036971044.1 mRNA downstream 1378727 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 1378727 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 1378727 13850975 ~ 14001721 (+) False LOC110487940
TU2626989 other upstream 535522 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 544996 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 889072 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 1163359 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 1932355 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 1157814 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 1281019 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 1541984 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 1734918 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 1746653 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile