RNA id: XM_036970609.1


Basic Information

Item Value
RNA id XM_036970609.1
length 2093
RNA type mRNA
GC content 0.52
exon number 5
gene id LOC118946451
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 13274220 ~ 13491588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGACTGTGAGCCGCTGCCTGTGGATATCGCGGATGCCAGTGCAGGCGAGAGCTACAGTCGAGAGACATACCCATTTACACTCAGCCAAAGCGAATAACGGAAGAGGAGGCAGTgggagagataaggagaggaggTGTTTCAGAGTGGTTTTAAGCTTCGGAAGAGGAGCTATGGTAGCGGAGGAGGACTCGGAATTTTGAGCACCACGAGAGGAAGAAAAAAACGCGTTATCCCGTTCTGCTGCGGCTAGTGAGCGCGTTCTCTGCTCGGGTTGGAATAGCCTACAGTGTGTTTACATGAGACCATGGAGATACGGCTTGGATTTATCAAACGGCACTTCGACAGTTTGTGAAAAAAAACTGGACCTCTCATTTTTCAACGGCATTTTACTCTCTTTTTATTCGTTGGGATTGTGTTTTTTAGTGTATTTTTTTCCGTTGGTATATTTTTGGTTTTTACCTATGGTGTTTCATTATTTATGTCGTCTTTTCCTTCTTTCAaaaatttcttatttttttatcgGTTTTGGAGGAGAGTTCGTAGTGAAGATTTTTGGAGAGAAGATGCTGCGCTGCTCATGTGAATGATATTCTCTCTCCCCAACTGAGACGTGCCATGGATGGAAAACTTAATTTGCATCTACGAAACCGATCGGGAAATATCCGTTACATCGAATAACCTCTGCTGACATCGATCAGgacCAATGACATAGGATGAACACTGCTggaggggtgtgtctgtgtgtgctgtcgTCCCTCTTTGCTGTGGCCTGGGCCGTAGCTGCCTTAGTtcctccagctcctctctctgccctggcCGCTGCCTATGGGTCTACCAGTGGCGTCTCTCccggggaggtagaggggggcaGCCTCCCCTCCCCATGCTCCAGCCTGGTAGCCGGGGTACTGTATGGCTCTTTCTCTCTGAGAGAGCTGTTCCCGTCGCAGGTGCTGGGCTGTTCCTGGTCGTTGGAAAACCCAGATCCCACCAAGTACTCCCTCTATCTCCGATTCACCCGCCATCCCTCTATCTGTCAATCACACTACCCCATGCTCCTCCCCCTCGACCATCATCTAGCCAATCAGAGCTGTCCGCTGGATCTAGAGACGCCACCTCAAGACCAGGAAGTGATAGACCTTTGCGGCAGGCAATTAGAATCAGAGGGACCTTATTCATTTTTGCAGTTCGACAAGAACTTTGTGCAGCTGTGCCTATCGAGACTACCGACAGCCGATGAACCGCCGGTAACCAAGGAAACACTAGAACTCCGGCTGGTCGAGGTTTTGCTAATCAACAACGAGAACTCCAGTCAGTTCACCTGTGGAGTACTCTGCCGATGGTTCGAGGAGTGCCTACGCAATGGTCGTCATGGAGAAGCTGATGTTGCCGACGGCGACGGTTGCAAAGTTACGCAGACTGGTTGTGTGTGTCCTAACAACAATGTGGTCATGGCTCAGCCTGTACCCCTTCTCCCGGCAACGCCCCATAGCAACGGATCGTTGTTACCTGAGAACTGCTGCGTCACAGAGCTGCACCATAACAACGCCATCGCCATAGCGCCCAGGGACGTCAGACACGacCTCTATCCAGACCCAGATGATGATGACCTGAAGGTGAAGACACAGAAACCCAGATCAGCAGACCAGCCAGGTGTGTTTCAGGCACAGACAGgtgaccCTGCGGCGGAGGAGTGGTCTCAGTGGAGTGTGTGTTCGTTAACGTGTGGTCAGGGTTGGCAAGTGCGGACACGCTCGTGTGTGTCCTCTCCCTACGGAACCCTGTGTAGTGGTGCCCTGAGAGAGACACGTATGTGTAACAATACAGCCACCTGCCCCGGTGACCCAGCACTGAGCTCAGTGCATGGGCTGTGGGAGGAGTGGTCGTCATGGAGCCTGTGTTCTGTCACGTGTGGGCGGGGCTCCAGGACCCGAACCAGAAACTGTGAGAGCGGAGGAGGGGCCAAGCTCTGTGGAGGGCCTGAGAAACAGACCAAACTCTGCAACATAGCAGTGTGTCCCGGTTAGTACCATCTCATGTACATTTAcacctctatctgtctgtctgtctatctctctgtctatccatcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2628898 lncRNA upstream 59640 13214294 ~ 13214580 (+) True G2298129
TU2628895 lncRNA upstream 61861 13212136 ~ 13212359 (+) True G2298126
TU2628894 lncRNA upstream 63661 13210274 ~ 13210559 (+) True G2298125
TU2628890 lncRNA upstream 66988 13207018 ~ 13207232 (+) True G2298121
TU2628886 lncRNA upstream 71578 13202400 ~ 13202642 (+) True G2298117
TU2629153 lncRNA downstream 86673 13578261 ~ 13578491 (+) True G2298360
TU2629160 lncRNA downstream 95264 13586852 ~ 13587059 (+) True G2298367
TU2629163 lncRNA downstream 100968 13592556 ~ 13592797 (+) True G2298370
TU2629165 lncRNA downstream 102767 13594355 ~ 13594604 (+) True G2298372
TU2629174 lncRNA downstream 117736 13609324 ~ 13609617 (+) True G2298381
XM_036971819.1 mRNA upstream 801972 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 801972 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 801972 12453662 ~ 12472248 (+) True LOC110487937
XM_021559856.2 mRNA upstream 860071 12322871 ~ 12414149 (+) False col8a2
XR_005041309.1 mRNA upstream 860071 12322871 ~ 12414149 (+) True col8a2
XM_036970608.1 mRNA downstream 16000 13507588 ~ 13724989 (+) False LOC110487938
XM_036971044.1 mRNA downstream 359387 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 359387 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 359387 13850975 ~ 14001721 (+) False LOC110487940
XM_021559863.2 mRNA downstream 653413 14145001 ~ 14175807 (+) True LOC110487944
TU2626989 other upstream 1356080 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 1365554 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 1709630 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 1983917 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 2752913 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 138474 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 261679 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 522644 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 715578 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 727313 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile