RNA id: XM_036970608.1


Basic Information

Item Value
RNA id XM_036970608.1
length 3334
RNA type mRNA
GC content 0.56
exon number 25
gene id LOC110487938
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 13507588 ~ 13724989 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGGGAGCCAGCAGAGACAGAGGAGGTGTAGTGCATCGGTGCATGGCTGGGCAGAGTGTAAAGGACCACACCAGGAGACCAGGGAGTGTACCAACCCATCTTGTGGTGGTGGGGGTAACTGGGGCAGCTGGAACCACTGGAGTCTGTGCAGTAAGACGTGTGACTCAGGGTGGCAGCGTCGCTTCAGGATGTGTGAGGGGACAGGGATACAGGGTTACCCCTGTGACGGCTCCGGAGAGGAGGTCCGCTCCTGCAACGACAAGAAGTGCCCCGcaccTCATGAGATCTGTAGAGATGAGTACCTTGTAACCATGACCTGGAAAAGAGCCTCGGCTGGAGAAACAGTCTACAACAAGTGTCCGACTAACGCCACTGgatctgCTAGTCGTCGTTGCTTGCTGGACGCTAATGGAGTTGCTTACTGGGGTCCTCCGAGCTTCGCCAGATGCGTCTCGATGGAATTCAGATATTTACATTTATCTTTGCGAGAGCATCTTGCGAAGGGTCAGAGGACCCTGGCTGGAGAGGGCATGTCTCAGGTCGTGAGGAATCTCCTGGAGCTCTTACAGAGGAGGAGCTACTACAGCGGTGACCTCCTGTTCTCCACGGAGATTCTCCGAAATGTGACGGACACCTTCAAGAGAGCAACCTACATCCCAGCTCCCGACGACACACAGAAATTCTTCCAGGTAGTCAGCTATATGTTGGACATGGAAAACCTTGAGAAGTGGGAAGACGCTCATCAGGTTTCTCCTGGTACGGCCCATCTCATGCGTATCTTGGAGGACTTCATCCATCTGATTGGAGAGGATCAGAAACCCTTCCAGAGTTTCCTGGTGGTCACCAACAACCTCATGATTACAATACAGCGAGAGCCCGTGACAGCGGTCTCCAGTGACATCAACTTCCCCATGAAGGGCAGGAGGGGAATGAAGGACTGGGCTCGTTCCGCCGAAGACAAACTCTACATCCCCAAAGAGGTCTTCACCCTAACCTCTGAAGAAACAGAAACGGAGACCTCGTATTTTGTCATCGGAGCCATCCTTTATCGAACCTTAGGAGTCATCCTTCCTGCCCCCAAagcCCCTGCTGTGATCAACTCTAAGATTCTGACGGTGACGGTCCGACCAGAACCCAAACCCAGTGAACCCATGGTGGTTGTGGAGCTGTCCCCACTGCTTAATGGCACATCAGATCCTCAGTGTGTTGTCTGGGACTATGGGAACCTGGAAGCTGGTGCTGAGAACTGGGACACAGAGGGCTGCCAAACGCTCACTTCTGCCGCTGTCCATACCAAATGCCTTTGCAGCAGGATCTCCACCTATGCCATACTAGCGCAGCAAGCTAAAGACCCGgacaTGGGTCCATCCAGTAtgccttctgttcccctcctgGTGGGCTGTGGGGTCTCCTGCAGTGCTCTGCTCATCCTGCTGCTCATCTATGCTGCTTTCTGGAGGTATATTCGTTCGGAAAGGTCTATCATCTTGGTTAatttctgtctctccatcctggCATCCAACATGTTGATACTGGTTGGACAGTCCCAGACACTCGGCAAGggccTGTGTACTGTGACTGCTGCGTTCCTTCATTTCTTCTTCTTGGCATCCTTCTGCTGGGTACTGACAGAGGCGTGGCAGTCTTACCTGGCTGTGATTGGCAAGATGAGGACACGCCTCATACGTAAACGCTTCCTGTGCCTGGGCTGgggtctcccAGCCCTGGTGGTTGCTGTGTCAGTAGGTTTCACTCGAACCAGAGGTTACGGTACACCCAGCTATTGCTGGCTGTCCTTGGAAGGCGGGCTTCTCTACGCATTTGTGGGACCTGCAGCTGTCATCGTATTGATGAACATGCTGATCGGTATTGTGGTCTTCAACAAGCTCATGTCTCGAGATGGCATCTCTGACAAGTCTAAAAAGCAGAGAGCTGGGGCGTCCCTGTGGAGTTCCTGTGTAGTTCTCCCTCTGCTGGCTCTGACCTGGATGTCTGCTGTGTTGGCCATCACTGACCGCCGCTCCACACTGTTCCAGGTTCTGTTTGCTGTCTTTGACTCTGTCCAGGGTTTCGTCATCATTACTGTCCACTGTGCCATGCGCCGCgagGTTCAAGACGCAGTGCGCTGTCGGATGGGGGGATGTAAAGACGACAGTGAGAACTCACCGGACTCATGCAAGAACGGACAGTCGGACTTTGAAAAAGATGTGGACCTGGCATGTCAAACAgtcatcTTCAAGGAAGTTAACACCTGTAACCCAGCAACCATCACCGGGACCCTCTCCCGTATCTCCCTTGATGAAGAGGATGACCCCAAGCTGGCGGCCCACCAGGAGGGGGGCCTAGGGGTCAACTTCAGCTCCCTCCCTGGAAACATCCCACCTCCCAACCTACTCGTCCAGGTGCCCCCGCTAGGTGTTCTGAACGAGCTAAGTGACACCACTGTGAAAAAGGAGGTGAACGTGGAGCAGCAGATGCACCAGGGGAACCCCAGGAACACGGCGCCTGTCTACCTGTGCACTGAGAGCGGGATGGGCTGGTCTCGACCGCCCCCTCTTCCCAACACTCTGGATGGACCttgtgggggaggggagggggactaTATGGTGTTACCCCGTAGGACGGTCAGTTTAAAACCCCCTCTGCCCCCAGGTCTGGGTCTGGGGCTGGGGGGCGAGGACAAGCCGCTAAACATCGCAGTGGACGACCCGCCCTTCCCCCCGCCCCCATCGCCCATGACCCTCCACCCGGCAGAGAGTGAGGCCTACCCAGCTGACTTCATCTCCCCCGGTGACCACAACATGAACATCGGCATGAACATGAACCGCTCTTACGGGACGCTCAAGCAGCTCCCCGTGCACGGGAGTCAAGGTCCCCAGGGCCACATGCACGCTCCGGGCGTCCACGTGCATGGGGGCCACATGCATGACTACGGGCACTCGCTGAAGCCTGGCCAGAGGCCATCGGTGAGGCAGATTCTAACAGGAGGGGGAGGCGCGGTGGAGCGCAACCGGACCCTGCCACGCAACCTGGGCAGCACCAACACTAACCCCAGCCTCTCCGCTGGCTCcctggagGACAAGTCGACCCCGACCCAAGACGACCAGCACTCCTGGGACAGCTTCAAGACCATGACCCCTGAGCTATCCATCGTGCCGGGGGAGCACAAGGACAGGATGGAGCTGCACAACAAGAACACCTGGGACTCCTCGTCTGCCAACACACCTGACACGTCTGAGGGGGACTTCCAGACCGAAGTGTgatgagacagagaaacacacacacacacacatacagaaacacaaacaaacacaatgaaacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2629101 lncRNA upstream 22125 13485031 ~ 13485463 (+) False G2298313
TU2629102 lncRNA upstream 22125 13485031 ~ 13485463 (+) False G2298313
TU2629103 lncRNA upstream 22125 13485031 ~ 13485463 (+) True G2298313
TU2629095 lncRNA upstream 22992 13483664 ~ 13484596 (+) True G2298312
TU2629057 lncRNA upstream 84168 13422045 ~ 13423420 (+) True G2298275
TU2628939 lncRNA downstream 2268 13727257 ~ 13731174 (+) False G2298167
TU2628940 lncRNA downstream 2268 13727257 ~ 13731174 (+) False G2298167
TU2628941 lncRNA downstream 2268 13727257 ~ 13731174 (+) False G2298167
TU2628942 lncRNA downstream 2268 13727257 ~ 13731174 (+) True G2298167
TU2629581 lncRNA downstream 32030 13757019 ~ 13757219 (+) True G2298746
XM_036970609.1 mRNA upstream 16000 13274220 ~ 13491588 (+) True LOC118946451
XM_036971819.1 mRNA upstream 1035340 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 1035340 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 1035340 12453662 ~ 12472248 (+) True LOC110487937
XM_021559856.2 mRNA upstream 1093439 12322871 ~ 12414149 (+) False col8a2
XM_036971044.1 mRNA downstream 125986 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 125986 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 125986 13850975 ~ 14001721 (+) False LOC110487940
XM_021559863.2 mRNA downstream 420012 14145001 ~ 14175807 (+) True LOC110487944
XM_021559866.2 mRNA downstream 453330 14178319 ~ 14187277 (+) False LOC110487945
TU2626989 other upstream 1589448 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 1598922 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 1942998 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 2217285 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 2986281 10514954 ~ 10521307 (+) True LOC110487904
TU2629574 other downstream 28278 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 289243 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 482177 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 493912 14218901 ~ 14223877 (+) True LOC118936620
TU2630121 other downstream 578747 14303736 ~ 14304232 (+) True G2299191

Expression Profile