RNA id: TU2629670


Basic Information

Item Value
RNA id TU2629670
length 1461
lncRNA type read_through
GC content 0.45
exon number 3
gene id LOC110487940
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 13850975 ~ 14003434 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gAATTGGTTGACCTGaacaaccagaggaaaaaaagaaATTACACGTCTTTACAGATGAATCATATAAAGAACAATAAATAGTTTCTGTTAATGAAAATAACATGTCCTAGTTGTTATTAGAATGTTGACATTGATTGACTCTGTGGAAGTTAGTTGACAGTGGCATAGAAAGATTGATTGCAGTAAGACAAACATTTACAAAGTTGTACAGCACTGACTTATGGGAAGTAGATGGGAGTACCCATCAGGATGTGCTGTTGCCAGTCAACTAGAGGAAGAGATCAAGGCTAAAGAAAACATGTTTTCTAAAATGAGGCAAAGGTAGAACGGGGCGGCAATGTACATGTGAGATAATTCACTCGAGCATTTCACTATTTCACTCGAGCATATAGGCGAGGATTTTAGCAATACATCTTACAAAGGTACAGTATGGAGCGTGGATTTTGATCCTAATCTTTTATTGGTACTTTTGTGTACACTTGTAAGCCACTTGTTGTTTGGTGGCGGGTGGAGTGGGTCATATGCTTGCCTTTTCTGcttcaaaacatatttaaaaattcATATTTCAGGTATTAAACAATAGCATTTAAAGTTACCACGgtatataaaataaaaagcacCAATCATTAGACACAAAGTCTATCTCTAGTCCTCCCAGTCCAGGGGCTACGGCTGCTGCTGATGACATTATCAATGACGTCACTGGATATGATTCTGATGTCGCTTTGAACGCAGCATCATTCTATTTCCCTCTGTGTTTGGGGGTGAGGCAGTTGGATGTGACTGTCATTGAAAAAAGCCAATCCCGAACCAGAGATTGTAATTTCAGAGGGGTGTTATTGGCTGTGAGTGGCTGTCCTCAGGGTGATTTAAAGTAGATGGGCATGGTGTATGTTGCAAACAGTCTCCAAACAGTTCAACTGAAGGTCGTCAGTTTAGGGGTCAGAGGGGCAATGTCAGTCATGATAGTATTTCCCCAACTCCTCGCTCTTGTTGGTATGCAATAAAGAAgagttctctctcttctgtctctctctttctctcctctatccctgcttctttctcttctctctctctctctctctcctctatccctgcttctctctcttctgtctctctctctctctctctctctcctctatccctgcttctctctcttctgtctctctctctctctcctctatccctgcttctctcttctgtctctctctttctccctggtgTTGTGGGGCTCTTGATGGAGAGGTCTCAGGTTAGACTCCTGGGCCCTTGACCCTGGCGGAGTCCTGTAGTCTGGGGGAGGTGTAGGCCGAGGCAGCTAGGCAGGCTGCAGCCTCACAGAACCCTGGAAGACCAGTGGGGCCCGCCTTACCAGGACGGCCAGCCTCTCCTGCCGAGCCCTGGGGGCCTCGCTCACCAGGCTTTCCGTTTCGAGCCACTCCGTCAATACCAGGGGGACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2629736 lncRNA upstream 6330 13989009 ~ 13995301 (+) False G2298874
TU2629738 lncRNA upstream 6330 13992892 ~ 13995301 (+) True G2298874
TU2629706 lncRNA upstream 81537 13918416 ~ 13920094 (+) True G2298847
TU2629694 lncRNA upstream 116518 13884756 ~ 13885113 (+) True G2298835
TU2629592 lncRNA upstream 236223 13765182 ~ 13765408 (+) True G2298752
TU2629747 lncRNA downstream 8120 14011554 ~ 14012175 (+) True G2298882
TU2629791 lncRNA downstream 75025 14078459 ~ 14079886 (+) True G2298916
TU2630089 lncRNA downstream 260651 14264085 ~ 14264524 (+) True G2299161
TU2630094 lncRNA downstream 270412 14273846 ~ 14274111 (+) True G2299166
TU2630100 lncRNA downstream 274499 14277933 ~ 14278233 (+) True G2299172
XM_036970608.1 mRNA upstream 276642 13507588 ~ 13724989 (+) False LOC110487938
XM_036970609.1 mRNA upstream 510043 13274220 ~ 13491588 (+) True LOC118946451
XM_036971819.1 mRNA upstream 1529383 12425043 ~ 12472248 (+) False LOC110487937
XM_021559863.2 mRNA downstream 141567 14145001 ~ 14175807 (+) True LOC110487944
XM_021559866.2 mRNA downstream 174885 14178319 ~ 14187277 (+) False LOC110487945
XM_021559865.2 mRNA downstream 174889 14178323 ~ 14187277 (+) True LOC110487945
XM_036971574.1 mRNA downstream 203939 14207373 ~ 14225546 (+) False LOC118936620
XM_036971576.1 mRNA downstream 214758 14218192 ~ 14225549 (+) False LOC118936620
TU2629574 other upstream 248114 13753267 ~ 13753517 (+) True G2298739
TU2629183 other upstream 370836 13630062 ~ 13630795 (+) True G2298390
TU2626989 other upstream 2083491 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 2092965 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 2437041 11563547 ~ 11564590 (+) True G2296278
TU2629753 other downstream 10798 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 203732 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 215467 14218901 ~ 14223877 (+) True LOC118936620
TU2630121 other downstream 300302 14303736 ~ 14304232 (+) True G2299191
TU2630211 other downstream 415227 14418661 ~ 14419677 (+) True G2299272

Expression Profile