RNA id: XM_021559865.2


Basic Information

Item Value
RNA id XM_021559865.2
length 1354
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110487945
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14178319 ~ 14187277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTTACCCTTGCGGCACCCGTAGAAAAGGGAGGTTTATTTTTGGCGCGCGCGCAACAGCAAGTTATATTCTGCACCGCACGCGTTTAAGGACGAAGCCGCTTGTTCTTTTTCCGTCGTACATTCTGCATCAGCTTTTTCTTGATTTTCAAGATGAAAACCTCCTCCCCTCTTGTTTCGCAGCCTAACATGGGTAAAAAGCAGAATGGCAAAGGCAAGAAGGAGGTGCTGGAGGCAGAGCCGCCGGAGGAGTATGTTGTGGAGAAGGTGATGGACCAGCGCATCGTCAATGGGAAGGTGGAATTTTTCCTCAAGTGGAAAGGATTTACAGAAGCGGATAACACTTGGGAGCCAGAGGATAACCTGGACTGTCCCGAGCTGATCTCGGCCTTCCTGGAAGCCCAGAAGAACGTGGTAGAAAAGCCCGACTCCAACAAGAGGAAGTCCTCAACAGATGAGCCAGAGACGGAGGAAAACAAAGCCAAGAAGAAGAAGGATGTGagtgaCAAGCCACGGGGCTTTGCCAGGAGCCTGGACCCAGAGAGGATCATCGGTGCAACTGACAGTAGTGGAGAACTTATGTTCTTGATGAAGTGGAAAGACTCGGACGAGGCAGACCTTGTCCCGGCCCGGGAGGCCAACACTCGCTGCCCTCAGGTGGTCATCTCCTTCTACGAGGAGAGGCTGACCTGGCACTCCTGTCCTGAGGATGAGGCGCAGTAGCACCCCTTCCTTGCCCAGATGATGTCCCCTGTGGGCCCCCCTGACCTTGACCTCCATCCTGTCCCTGATCCTGTCTCTCAGGACTGTTCTGTGTCTCTTCTCTCGCCCCTCTGTATTTTTTTTGACTTTTACAATATGTTTAGCCATAGTGTTTAGTGCAGAGCAGTCAGGTGAAAGCTTGTGCTTTGGTACATATTTTAGTGATAGGACAACATTGTTTACTGGGAAAGAGactgaggaggatgtggagaaatGGGTAGGATGTGGAAATAAGGGGATGGGTGATTTGTCTCTTTTCATGGACCTATTCCTCATCCAAAACTGTCAGGGACTAGTTCCTCAGTCGATATATAGTTTGAAAATTAACACCGTGGATCATATGAAATCTTGATTTATTTCTCCCCCACCCATATAATCATTTGTCAGACATGTATTTTCAAGGTGGTGCATGGCTGTTCTGTTCACTGTCTAGCCCCCtttcccctcatctccctcccatGAAACTAGTCCTCCCCCCCCCGTGGTTGCATACTTGAATCCCTTGAACAGTGTCTTTTGCTGTATATTCactttgtaaatatttttttcaagaAGCTGTTCAATAAAGGTTTATATGCTTCATTTTACCACCC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11586 CBX3, HP1G; chromobox protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2629791 lncRNA upstream 98437 14078459 ~ 14079886 (+) True G2298916
TU2629747 lncRNA upstream 166148 14011554 ~ 14012175 (+) True G2298882
TU2629673 lncRNA upstream 174889 14001631 ~ 14003434 (+) False LOC110487940
TU2630089 lncRNA downstream 76808 14264085 ~ 14264524 (+) True G2299161
TU2630094 lncRNA downstream 86569 14273846 ~ 14274111 (+) True G2299166
TU2630100 lncRNA downstream 90656 14277933 ~ 14278233 (+) True G2299172
TU2630138 lncRNA downstream 145800 14333077 ~ 14333310 (+) True G2299208
TU2630139 lncRNA downstream 147187 14334464 ~ 14334700 (+) True G2299209
XM_021559863.2 mRNA upstream 2516 14145001 ~ 14175807 (+) True LOC110487944
XM_036971044.1 mRNA upstream 176602 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA upstream 176602 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA upstream 176602 13850975 ~ 14001721 (+) False LOC110487940
XM_036970608.1 mRNA upstream 453334 13507588 ~ 13724989 (+) False LOC110487938
XM_036971574.1 mRNA downstream 20096 14207373 ~ 14225546 (+) False LOC118936620
XM_036971576.1 mRNA downstream 30915 14218192 ~ 14225549 (+) False LOC118936620
XM_036971575.1 mRNA downstream 30916 14218193 ~ 14225549 (+) False LOC118936620
XM_021559867.2 mRNA downstream 55480 14242757 ~ 14260096 (+) False LOC110487946
XM_036971578.1 mRNA downstream 66298 14253575 ~ 14260096 (+) False LOC110487946
TU2629753 other upstream 162736 14014232 ~ 14015587 (+) True G2298884
TU2629574 other upstream 424806 13753267 ~ 13753517 (+) True G2298739
TU2629183 other upstream 547528 13630062 ~ 13630795 (+) True G2298390
TU2626989 other upstream 2260183 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 2269657 11906707 ~ 11908666 (+) False LOC110487932
TU2629857 other downstream 19889 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 31624 14218901 ~ 14223877 (+) True LOC118936620
TU2630121 other downstream 116459 14303736 ~ 14304232 (+) True G2299191
TU2630211 other downstream 231384 14418661 ~ 14419677 (+) True G2299272
TU2630335 other downstream 326732 14514009 ~ 14515434 (+) True LOC110489442

Expression Profile