RNA id: XM_036971574.1


Basic Information

Item Value
RNA id XM_036971574.1
length 2394
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC118936620
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14207166 ~ 14225549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTCCCCCGCCCACTTTGCTTCCCAGCCAACTTTGTTTCCCttcattgaaaatgaatgggCTCCCTTATTTCGTCGCCTCCAGTGTGCTGGATGGATTTCCGGTGTGAGGCTACGTACTGCCTATGGGGGGGTGTTCAGCAAAGAAAGATGTATCCTCTCCTGTAGCTCAGTCAAAGGATTGTTCGATTTGTTTTTAAATGCGTTGTTGTGCACTGAAGTTTTGGTTAAAACACTCCCTGATTTCAGACCAGGAACGTGCACGAGCAAAATGAATGAACAGAGCGGGCGCGTCATCCTCAAGTTTTTCAGACAACAACTACAGTCGGTTTAACCGCGAACAGAGCAAGCAGCGAAGAAATCAAGTCCGCCCCAGCGGCACCAAGTCATATCGAACGAATTGCCAGCTGAAGGATTCCATTCTACAATGGACAGGATTGACAGTCTAATGAAACAGGAGTTTGTCAGTGTTTGGGTCCAAGATCCACAGTTCCACAAAGATGACTTCTGGCACACGCACATCGACTACGAGATCTGTTTACATACCAATAGCATGTGTTTTAGGAAGAAGACTTCCTGTGTGCGTAGGCAGTACAGTGAGTTTGTTTGGCTCCGGCAGCGTCTGCAGGACAATGCTATGCTCATAGAGTTGCCCAAATTACCTCCCTGGAATCCGTTCTTCAGTCTGAACAACCCCTATCAGGTCAACCAGCGGATGAAGGGTCTACAGGAGTTTCTAGAGACTGTCCTCCAGGACCCCCTGCTGCTGTCTGACAGCAGAGTGCACCTTTTCCTCCAATCCCAGCTCAGCGTGACCAAGATGGAGGCGTGTGTCTTGGGCCAGACACGCTACACAGTGGCCCAGGCCATCCAGATGTGTAGTGACTGCCACCGCACACGCTTCCCCGTAGAGAAGAGCCGCAAGGAGTACTGCGACTCGAACGGCGAAAGcACCACATCATCAGGTCTAGGCCACAGCCATGACTCGGGGGTCCCCCAGAGCTCCAGCCCCCTACCCTGTGACAGCAGTTGTGAAAACTGTGATGGAAGCCTAACCATCAGGGACAGAAGATTTTTCAGCAGAGAGTCCTCTTGTGACCAGGAACACACAGAGCCCTGACACATGCACAAAGGGGCTGTTTCCCAGACAAATATTCAGCCTAGTCCTGCACCCAAAATGATGCTAAATgattgaaagtgctttttagttCAGGACTAAGCGTAGTCTTTGTCTGGGAAGCTGCCCCAAAGACTCTGTTTGCTGCTGTTCCAGGTGAACTTCTCAAACCTCTGAAGATGAGGAGGTGGAGTAGAAAGTCCTTTTTTATGTGGTTCTCCGTTGGCATTCTGTGTTCCCTATCTGTCTTTTAAAATGTCTGAACTATATGTTTTCTTAAAGgatatgttattatattgatACACCCACTATTGTGGACTGACTGGTGTTGCTGGTGAACAAGGCACTTGAGCAAGTTGTCTTAATGCAGTATCTCTGTCTTAAACTCTAACTTGTGCCTCACATGtttataaaaaatttaaaaaataaaaaaagaggaaAAGAAAGATTTCTATCACTTACCCTGCAATGATACTGGGAAAGATTCTTAAATTATGAATGTTTTATTTGCACTATTAAACTGTGTTGTATAGgctcatttaaataaaaaaaaatctaaaatattttttcattagTATTCCAAGTATCaataaatatgatttttttttttgaagaagAAGAACTAACTTGATAATTGTTTGACTTTGGAGCCGGTGTCATCGTCTGTCCTTTGTGAAATCCTGGAATGTTCAGCAAGTCATTTTTGTTTAAATGTGCTTTGTTTTGTTGTCTCTGCCAAAAAATAGTCTCCTTTTCAttaaggtatgtggacacctgctcgtcaaacatctcattacaaaatcatgggcattcatatggagttggtcccccccctttgttgcctaaacagcctccactcttctgggaaggctttacactagaagctggaacattgctgcggggacttgcttccatttagccatgAGCCTTAGTGAGGCCGGGcaccgatgttgggcgattaggcctggcttgcagtcggcgttacAATTTATCCCTAAAGTGTttgatgtggttgaggtcagggctctgtgcaggccagtcaagttcttccacactgagctcgacaaaccacttctgtatggacctcgttttgtgcacgggagcattgtcatgctgaaacgggAAAGGGCGTTCACCAAACGGTTGCACAGTATCATCTAGAATTTGATTGAATGCTGTAGCATTAATAATTctcttcactgaaactaaggggcttagccccaaccattattcctcctccaccaaactttacaggtggttctatgcattggggcagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2629791 lncRNA upstream 127487 14078459 ~ 14079886 (+) True G2298916
TU2629747 lncRNA upstream 195198 14011554 ~ 14012175 (+) True G2298882
TU2629673 lncRNA upstream 203939 14001631 ~ 14003434 (+) False LOC110487940
TU2630089 lncRNA downstream 38539 14264085 ~ 14264524 (+) True G2299161
TU2630094 lncRNA downstream 48300 14273846 ~ 14274111 (+) True G2299166
TU2630100 lncRNA downstream 52387 14277933 ~ 14278233 (+) True G2299172
TU2630138 lncRNA downstream 107531 14333077 ~ 14333310 (+) True G2299208
TU2630139 lncRNA downstream 108918 14334464 ~ 14334700 (+) True G2299209
XM_021559866.2 mRNA upstream 20096 14178319 ~ 14187277 (+) False LOC110487945
XM_021559865.2 mRNA upstream 20096 14178323 ~ 14187277 (+) True LOC110487945
XM_021559863.2 mRNA upstream 31566 14145001 ~ 14175807 (+) True LOC110487944
XM_036971044.1 mRNA upstream 205652 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA upstream 205652 13850975 ~ 14001721 (+) False LOC110487940
XM_021559867.2 mRNA downstream 17211 14242757 ~ 14260096 (+) False LOC110487946
XM_036971578.1 mRNA downstream 28029 14253575 ~ 14260096 (+) False LOC110487946
XM_036971577.1 mRNA downstream 28030 14253576 ~ 14260096 (+) True LOC110487946
XR_002468322.2 mRNA downstream 196906 14422452 ~ 14424543 (+) True LOC110487954
XR_002468321.2 mRNA downstream 210359 14435905 ~ 14437911 (+) False LOC110487953
TU2629753 other upstream 191786 14014232 ~ 14015587 (+) True G2298884
TU2629574 other upstream 453856 13753267 ~ 13753517 (+) True G2298739
TU2629183 other upstream 576578 13630062 ~ 13630795 (+) True G2298390
TU2626989 other upstream 2289233 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 2298707 11906707 ~ 11908666 (+) False LOC110487932
TU2630121 other downstream 78190 14303736 ~ 14304232 (+) True G2299191
TU2630211 other downstream 193115 14418661 ~ 14419677 (+) True G2299272
TU2630335 other downstream 288463 14514009 ~ 14515434 (+) True LOC110489442
TU2630377 other downstream 357415 14582961 ~ 14585025 (+) False LOC110489384
TU2630375 other downstream 409675 14635221 ~ 14638903 (+) True LOC110489384

Expression Profile