RNA id: XR_002468321.2


Basic Information

Item Value
RNA id XR_002468321.2
length 1909
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110487953
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14435905 ~ 14437911 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgacttgcataggtaaataaaggttaaatatctTTAGTGCCCATTTAAGTAAACAGAGAGTGCTAATCCCGATGCAATATACTGTGATCATTGGCCAGCTAGCCTTGAGCCACTGGCAGAGCAAGAGAAGCGTTTGCCGCTGCGGTGTGACTGCGAGATACAGAGAGGTCTTTACGGGTGGCGGATGGATCACTCAACACCTGAGTCACCCCTTACTATTTTATTGAGAGATAAGGCTGGGGCTATTGTGTGCAGAGGCCCCCATCATCACCCCACATCCCGAGCTATAGTCTACAaccactcactcacacattcaGACAATAGCATACATGCTGGCGGaccaatggaaatcaaatgtgttATAGTTAGTTACCTGTCCGAATGCTGAGTTAAAGGTGTGCGCCCCGGTAGccgggaggtgtgtgtgtgtgtgtcagtcagtcagtcagtgctgAGCTGAGAGGGCATAGTGCATACGGGAGCTCATTGAACTGAATATTTACCCCCCTGGTCAGTGCAGGGACCCTCCATTCATCCTGCAGCTCTTATGCATTCCCTACGGCCAGTTGAGTAATGCTGGAAATTATAGGTTCGCACAGAGGTCATACTCAATTCCCAGTATGGGGGGGAAGGATCAGGTGGTAATATGGCAACTAGCCTACTCTTATGAGATGAGGGCCAACGACAATAGTAATCTTTGAAATAAATGCATATTCTCTTGCAATCCATAATAGGTCCACAACTTAAATTATGAACATATTGTGGCGCACTACATGATATCGTTTAGCCTTCCCGGGCATTGCCTAAACCTTGACCGGAAGAGCAGCCCTTCTCTCCGCACCGCTTGGCGCTTGATTTCCGTCAACACTGAGCAGCGGGCGTGGAAATGTTCCTCCACCATAACTATTAATCACGCCAAGCGGACATGGAGCGCATCCCCCTCCCACATCACAGCACCCTTTGTCTTCTCAAACTACAACTTGAGCCGTTTAAACTTTTAAAACCTGAACAGGAGGGAACAATCTCTTATCAGTTTACATTGCAGACCACTTTATGGATGATTGGGAGTGAGGAGGCTATGCATTTATTATTTATGTTGGATTAGAATTAAGGGGGAATCAGATTTGATTCGCATTAATTCATGTTCTAGTTTTTGTGAAGAGTTCGGCCAGATTTGCATACCACTCCACCAGCGCAGAGAGCACGTGCATTGCAACACCAGAGAGCGTCTGGGGCTGAGCTGACTGTGGACGGAAAACAGACCCTTTCTCCCACGCCACCTTTCGCCACCGCACCTGAACTTTTCCCTGACCCAAACCGAGGCGCGGAGAGTCGAGTGTGAAGTTATTTTGGTTCAAAAACAAGGAGAGGATGGAGACTATTTAACCAATAAGAGCTATACCTTACTTTTTAGCTGGGAACGTTTTGGATCCTTGTTTTTAACGGGCTATTGTTGGTTTCAGCAGTTGATTAACCTATTTCTTGGTTTGTATGTATACATATATTAAAGTTAGTAACATAAAGCTGGTAACCTAAATCCAACTTCCAACATTTACCGGCCTTGAGCTGTAGACTTGAGCCGTAGACAGTCCTCTCCACACCGCTCCGTCATTGGATGTTCGCCAGACTGCGGTGCATCTCCACAATGTTGACATTTAAAGCTCTTAACAGCGAGCCTTGGGTTACCGATACACTCAGCAGAAGATAACTCTTTCTCAGGGGTTTACATCGGCCAACATCAAGGCTAATGCGAAATTCAACGCCCTAAACTGGTTTGGCGTGCATGCTAAAACAGAGAACCCTCGGTGGATCTCGCTATACTCTCCATAACGGACGGACttatgttgtggtggtggtttgtTTCTGTATGTGCTGTAGAAATAAAATTGTAGTGGTAATAATGTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2630215 lncRNA upstream 12090 14423463 ~ 14423815 (+) True G2299276
TU2630214 lncRNA upstream 19562 14415659 ~ 14416343 (+) True G2299275
TU2630205 lncRNA upstream 38615 14396868 ~ 14397290 (+) True G2299266
TU2630139 lncRNA upstream 101205 14334464 ~ 14334700 (+) True G2299209
TU2630138 lncRNA upstream 102595 14333077 ~ 14333310 (+) True G2299208
TU2630243 lncRNA downstream 25522 14463433 ~ 14465014 (+) True G2299302
TU2630249 lncRNA downstream 34288 14472199 ~ 14472543 (+) True G2299308
TU2630250 lncRNA downstream 35438 14473349 ~ 14474930 (+) True G2299309
TU2630256 lncRNA downstream 40976 14478887 ~ 14479095 (+) True G2299315
TU2630257 lncRNA downstream 44306 14482217 ~ 14482422 (+) True G2299316
XR_002468322.2 mRNA upstream 11362 14422452 ~ 14424543 (+) True LOC110487954
XM_021559867.2 mRNA upstream 175809 14242757 ~ 14260096 (+) False LOC110487946
XM_036971578.1 mRNA upstream 175809 14253575 ~ 14260096 (+) False LOC110487946
XM_036971577.1 mRNA upstream 175809 14253576 ~ 14260096 (+) True LOC110487946
XM_036971576.1 mRNA upstream 210356 14218192 ~ 14225549 (+) False LOC118936620
XM_021562149.2 mRNA downstream 75702 14513613 ~ 14517978 (+) False LOC110489442
XM_036971550.1 mRNA downstream 145013 14582924 ~ 14634704 (+) False LOC110489384
XM_036971545.1 mRNA downstream 145013 14582924 ~ 14638902 (+) False LOC110489384
XM_036971549.1 mRNA downstream 145013 14582924 ~ 14638902 (+) False LOC110489384
XM_036971546.1 mRNA downstream 145025 14582936 ~ 14638902 (+) False LOC110489384
TU2630211 other upstream 16228 14418661 ~ 14419677 (+) True G2299272
TU2630121 other upstream 131673 14303736 ~ 14304232 (+) True G2299191
TU2629857 other upstream 212028 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other upstream 212028 14218901 ~ 14223877 (+) True LOC118936620
TU2629753 other upstream 420318 14014232 ~ 14015587 (+) True G2298884
TU2630335 other downstream 76098 14514009 ~ 14515434 (+) True LOC110489442
TU2630377 other downstream 145050 14582961 ~ 14585025 (+) False LOC110489384
TU2630375 other downstream 197310 14635221 ~ 14638903 (+) True LOC110489384
TU2630658 other downstream 585722 15023633 ~ 15024931 (+) False G2299643
TU2630662 other downstream 585722 15023633 ~ 15024885 (+) False G2299643

Expression Profile