RNA id: XM_036971549.1


Basic Information

Item Value
RNA id XM_036971549.1
length 4638
RNA type mRNA
GC content 0.53
exon number 17
gene id LOC110489384
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14582924 ~ 14638903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCATCCCGGAAGTGACACCATCACTTGACAACCATAGCTCAGTGGTTGACGACGGGGCCTGAAGCTGTGTGACAACAACGGCTTTTGGACTGTCATATGTTGACTTTCAAAACATAATTGGACCTTGTTTGGATTCATATGTAAGACAGGTCAGACAAATGAAGTGACAAGCAGGATATGTCCTCGTTCCAGGTGGTGGGCTCTTCGCCCACCAGTGGCATTGGTGTCATGGAAACATCAAACTTTGCTCATGTTATCTTCCAGAATGTTAGGAAGAGCTTCCTGCCCCAGGAGGCACTGGAGTGTCGCTACACCCTCACCTCCTACATCACCCCCAACCCCAAAGACTGGGTGGGCATCTTTAAGGTGGGTTGGAACACAGCGAGGGATTACTACACCTTCCTGTGGTCTCCTATGCCGGAAAACTACCAACCTGGAAGCACTGTACACAGGGCTGTGGTGTTCCAAGGGCACTATGTTCCCAAGAGTGACGGGGAGTTCTATCAGCTCTGTTACGTCACGCACATGGGTGACATCAGAGGCGCCAGCACGCCTTTCCTGTTTCGCCCAGCCACGCCCACCGAGGACTGTCTCACCGTTACCGAGGACGACAACAACTCAGACATACTGGTGGTGACCACCAAGAGCAGTCTGGAGCAGCGTGTAGAGGAGGCGCAGCAGGAGCGCAGGGAGCTGTTGAAGAGATTACATCACCTTCAGAAGGAGAAACAGCAGCTGCAGGAGGAGCACAGGAGGctgcacagagagagggagcaggagagggagaCCTGCTACCTTCTACGCACGCACAaccagGAGCTGCTGCGCTCCTCCCAGGGCCTgtcagaggagagggaggaggtgaggaggaggctGCAGGAGGCCACAGACCGGGTCAGACAGCTGGAGGAGGACCTACTGGGAGTCACACAGAGAGGACTGCAGAAAGAGACCGAACTGGACTGTCTgagagacaggttgaagaagCTGACAGCAGAAAGAGACCGTCTGGAGACTCAACTGAAGAACGACAAGGACGAGAGGGACCTCTACAAGggccacCTGCGCAGCACGGAGCTGGAGAACACTAAGCTGAGTGCAGAGCTGCAGATGCTGAAGGCTGTGGAGCTCAACAGAGAGGTGACCATCGCTCAGTTCCAGGAAGAACTGGACAGGCTCCGAGCCTGCGTCACTCAGAAAGACCACCTGGAGAAAGAGCTGCACACACACGCTGTAGACAAGGCTGAGATGGGTCGTCTGAGGGAGCAGCTTCGCCAGTGTGAGGAGCAGCTCCAGGCCTCTCGCCAGCAGGCCGCCAGGTTGGCGTCGGAACTCCGTGACTCAGCGAATGCCCGCGATCGCACCATGACCGAGCTGTACCGCGCCCGCCTAGAGGCCGATGCCCTCCGTGCCAGCCTGGCCGATGCCCAGGCCGAATGCCGGAGGATGGAGACGCAGCTGGACCACATGAGGACCACCTCCCAGCAGGAAGTGGGTGTGGGGACCTCCAGTGAGGGGGGGTGTGTGGTGTCTGAGGCGGAGGCTGAGCTACAGAGAGAAGTGGAGGAGCTGAAGCTGCGTCTCCACATGGCCGCTGAGCACTACAAGGAGAAGTACAGGGAGTGTCAGCGACTCCGCAGGCAGGTGGCCAAGATCAGCGAGGCCCAGGggGAGGCCAAGAGAAACGCTGCCACTGAGACGACACAGGAGCCACTGACACCCAGTCCAGAGTCACctacagcagGCAATCTATCTGCAACTGTGCTGAGAGGAGACAGTGAGAGGCCGGTAGTCCCTAACCGGCGTGATAAAAACAGggaacacacacatacctacgcACAGACCGAcgcacagaccaacacacacaccaacacattctcCGGCATGGAGACCATGAGAGCTGGGGAGAAAGAGTGGAAGGGGCGGAATagggaagagatggaaagagaagtgagtggagaggaggaagggaaagaaGATGGGAgtgtggaagaggagaggaaggaggacatgagtgaaggagaggagaggaaggaggacaggagtgaaggagaggagaggaaggaggacaggagtggaggagaggagagcatgaAGATGGAGAGTTGGGTGGATGTGGAGAATGAGAGGAAGAGTGCTGAAGAGTTGGATGAGAGGAGTGTGGAGGATGAGGGGAAGAGTgcggaggaggtagagaaagaacaGACTCGTTCGGTGGAGGAGGAGCTGGCGAGGATGGAGGAGAAGTGGGCGGAGCAGTGTGCTATCAACGAGACGCTTAAGCAGAGACTGGCCAATGAGGAGGAGCGATTCAGGATCCAGATGGTAGAGAGGGCCATGGAGGTGACAGAGCTGAAGGAGAGTCTGGCTCAGGCCCTCAGAGAGAAGAATCAACTCAAGGAGGAGCTGCAGCAGTGTCAGGGCCGACAGAGGGAGCAGGAGGCTGATGGTCAGGTGTCAGAGGTCAAACAGCCTGTGTTGCTGCGCTACCCACTTCCCTACCCCCAGgacccctccccaccccccctgGTACCCCAGAGACCTGCAGAGCTGCAGTACGGGAACCCCTACTCCACCGACAACACTCGAGACGGGGCAGACGGCGCCCTGTCCCCAGAGCAGATGCTCCGCCCCCCTCCTGAGGCCCCTGGTGCATGCGCCCCTCCGGCCACCTCCCCGACCCCGTGTGCAGGTGCAGACTGGGAGAGAGATGTGGTCTGCATCCAGCCCTCCTCCTCACGAAGCTTGAGCCCCCCTGACGGACTGGAACACTCCCCCGAGGAGCCACGCAATGTCGGTGATGGGGAGCAGCCTGCCTGCAATCATCAGACCAGCAGCAGACTTACCGCCAACAGGGGCAGCTTCTGTTTCgaccccagTGGTGAGGTTCACAAGCGCTGTCCGTTGTGCGAGGTGATCTTCCCGCCCCACTTTGAGCAGCGTAGCTTTGAGCAGCACGTGGAGAGCCACTGGAAGGTGTGTCCTGTGTGCTCTGAGCAGTTCCCCCTCCACTGCCATCAGCAGCTCTTCCAGAAGCACGTGCTCACACACTTTGACGGCCATGTGCTAAACTTCACCAACATGGAGTAGCAGGGCagatgggggagtgtgtgtgaaaGGGACGGTTTGGATTAAGGGATGTAAAGAAGAATAAAGGAACCTTTACTCAAATGGGGGTCGAGATGATTTCATTCAAGAAGGGAGATTCCAAATCAAGATGAGAGAAATCATTGGGGGTAAATTGCACTTTGTTGtaaattgaaatggaattaaCTCCAGCCTTGGCCTCACATACTTCCACGAGAACATGCTACCTTTTAACAACATCAAGGAGTGTGTGTATGACTTTCTACAAGGGGGAGTTTGTCAGTTTAGGgaaattacaacaacaaaaaatgttttgcgTGAGGTTTCGGAGCCTTGGAGCTCTTTGGTTTTGTCCCATGTTGATATCATCACTGGATGTGTTTAGTATCTGTAGGAATCATCTGCGTTAATCAGCCAGTCAATAGTACCTACTTTACAAGTTTCTACTCCCAGAGTCACTCTGTAGAAACAGGTGACATCCAGGGATGTGAGGGAGAGTAGGAGCACGTTGCCCCTAGACACTAatggtcagttttgcatttcccctctaatggttaaggttaggatttggtTTACCTGAACCTATATCTGTGGAAACTTCTAccgtggagaggggggggggggggggggttaggggttaggatctTGGGAGGAGATATGTGGTCTTGAAGCACCTCCAGCCCAATGTAATGTAAAGTATGAGTCAAACTCGTCAGCAAAATGTTTTAACCGTCTGCAAAATCAGACGGTTAAAAAATAATTAGTACAATTGTTTGAATTTGATTGCACTAAAAATACTTTATTATTCtgaatgtatatttgtgtgtataactgggtggttcaagccctgaatgctgattggctgacagctgtgctatattagaccgtataccacaggtatgacaaaacaactATTTTTACTgcgttgataaccagtttataacagcaataagccACCTCAGGGGATTGtgatatatgaccaatataccacggctaagggctgtgtccaggcactccacgttgcgtaTAAAGAACTGCCCTTAGTCgtggaatattggccatataccacacccccttgggccttattgctgaaataaaaaatatatatatatgagaagTAGAACTATTTCAATTGCTGTTGTGACAATGTACTCCCACATGTTTTAGTCATGACAGATTGATGTTTTACTTCCTGGTCTCCATTCATTGGATAGGCTGACATTCCGCTTCAGTTGATTGGAGGGAAGGTAACTGGAAATATGAACGCTATAGAAAACTACTGTGCTATGGACTCTTTCACCGTGTTAAGATTCTAACAATTGCCTCCTTTGTTTGGGTCAAAGTAAGTTTCTTGTGCGCGTGTCTCTGATTCCTGTCATCTACTGTCAGTCTGAGATTTTACTGCTCTTTCAATGTGACCACAGTGCTGTACTTTTGGCTTCAAAAGTTGCTCACGTGTGTCTGTCATGTCCAAATGCGGCtctttgaaagtgtgtgtgtgtgtaggtttgtaTGTGAGCATTAAAAATAAAGTACGCTTGTCAAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2630338 lncRNA upstream 67063 14515632 ~ 14515861 (+) True G2299391
TU2630251 lncRNA upstream 91860 14488439 ~ 14491064 (+) True G2299310
TU2630257 lncRNA upstream 100502 14482217 ~ 14482422 (+) True G2299316
TU2630256 lncRNA upstream 103829 14478887 ~ 14479095 (+) True G2299315
TU2630250 lncRNA upstream 107994 14473349 ~ 14474930 (+) True G2299309
TU2630383 lncRNA downstream 66 14638968 ~ 14642798 (+) False G2299422
TU2630384 lncRNA downstream 66 14638968 ~ 14642798 (+) False G2299422
TU2630385 lncRNA downstream 66 14638968 ~ 14642798 (+) True G2299422
TU2630476 lncRNA downstream 98062 14736964 ~ 14739942 (+) True G2299500
TU2630499 lncRNA downstream 102860 14741762 ~ 14741971 (+) True G2299515
XM_021562149.2 mRNA upstream 64946 14513613 ~ 14517978 (+) False LOC110489442
XR_002468321.2 mRNA upstream 145013 14435905 ~ 14437911 (+) False LOC110487953
XR_002468322.2 mRNA upstream 158381 14422452 ~ 14424543 (+) True LOC110487954
XM_036971578.1 mRNA upstream 322828 14253575 ~ 14260096 (+) False LOC110487946
XM_036971410.1 mRNA downstream 49010 14687912 ~ 14726969 (+) False LOC110487967
XM_036971411.1 mRNA downstream 49010 14687912 ~ 14726969 (+) True LOC110487967
XM_036971032.1 mRNA downstream 122210 14761112 ~ 14793523 (+) False LOC110487969
XM_036971035.1 mRNA downstream 122210 14761112 ~ 14793523 (+) False LOC110487969
XM_036971036.1 mRNA downstream 122210 14761112 ~ 14793523 (+) False LOC110487969
TU2630335 other upstream 67490 14514009 ~ 14515434 (+) True LOC110489442
TU2630211 other upstream 163247 14418661 ~ 14419677 (+) True G2299272
TU2630121 other upstream 278692 14303736 ~ 14304232 (+) True G2299191
TU2629857 other upstream 359047 14207166 ~ 14223877 (+) False LOC118936620
TU2630658 other downstream 384731 15023633 ~ 15024931 (+) False G2299643
TU2630662 other downstream 384731 15023633 ~ 15024885 (+) False G2299643
TU2630647 other downstream 384823 15023725 ~ 15027132 (+) False G2299643
TU2630648 other downstream 384823 15023725 ~ 15024885 (+) False G2299643
TU2631085 other downstream 493365 15132267 ~ 15158541 (+) False LOC110487981

Expression Profile