RNA id: TU2630377


Basic Information

Item Value
RNA id TU2630377
length 1367
RNA type TUCP
GC content 0.41
exon number 2
gene id LOC110489384
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14582924 ~ 14638903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCAGTGGTTGACGACGGGGCCTGAAGCTGTGTGACAACAACGGCTTTTGGACTGTCATATGTTGACTTTCAAAACATAATTGGACCTTGTTTGGATTCATATGTAAGACAGGTCAGACAAATGAAGTGACAAGCAGGATATGTCCTCGTTCCAGGTGGTGGGCTCTTCGCCCACCAGTGGCATTGGTGTCATGGAAACATCAAACTTTGCTCATGTTATCTTCCAGAATGTTAGGAAGAGCTTCCTGCCCCAGGAGGCACTGGAGTGTCGCTACACCCTCACCTCCTACATCACCCCCAACCCCAAAGACTGGGTGGGCATCTTTAAGGTAACATCACACCGTGTGTCACCCCCCAGATTttttggtgggggtgggggggcttcTGAAGAGTGTCTTTCTTCGCTCTGCTGATGACTGTGTTTCTCCGCTCACacaggagtaataaaggcctAGTTCACACGTTTTGTGGATTGAATTTTTTCTTATAATAAttgtcaaaatattttttttgtgtattttattttttctaaTAATAATTGTCaaaatatttgttatttatttaaatgtatcagggggtgctgcagcacccctgcTTCCCTTGTTTGTGGCCAGTTGTAATTTTAATATGATAACAAATATGCCCAACTCCGAGCTCTAACCAAAAAAAATGGCGGAAAATTTCTCTAACCTCAGATCAGTAGTAACCACCCAGTTCAATGATAGTTATCTTAAAATTAAAAGACGGCGACTAAGAATTCTACACCCCAGTAACATACAGGATTTGTGTCATCTCAGACATTTTCTAATACAACAGTTGAGCTAGCTAATGAAATGTTAGCTAATTTGcgatactagctagctagctagctgcactCAACTCACAGCCATTTAATCAACTGACAGTGACTACCGCATTTTGGGGGATTGCTAACTGGCttaaatctagctagctagcattctgGTCACTCACTGAGCAGGCAGTAGCCAACAAATCGTGGATGCATGATCAGCAAACAGTGGAAGATGAGCCAACCTGCATAGCTAGTTTGTTTTCAGACAAATATGTTCAACTCATAGGTTTTGTGGGAGGGTTATTaaactatatagagccatgactacatgtgactctattccacatcaggtaactgctgcaagcagtagaatcagattttaaaaacaggtaaaaatacaccttatggaacagcggagaCTGTGAcgagacacacacaaaggtacagacgCCCACACGTATATTGTAATATTGTTGaatgatggtattatacattttgtattgtgtatatatgtagtggtgtaataatgttatatgatgtactgtttattcttttgttttaaatgtaagtgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2630338 lncRNA upstream 67100 14515632 ~ 14515861 (+) True G2299391
TU2630251 lncRNA upstream 91897 14488439 ~ 14491064 (+) True G2299310
TU2630257 lncRNA upstream 100539 14482217 ~ 14482422 (+) True G2299316
TU2630256 lncRNA upstream 103866 14478887 ~ 14479095 (+) True G2299315
TU2630250 lncRNA upstream 108031 14473349 ~ 14474930 (+) True G2299309
TU2630415 lncRNA downstream 15555 14600580 ~ 14601237 (+) False G2299450
TU2630416 lncRNA downstream 15555 14600580 ~ 14601237 (+) True G2299450
TU2630383 lncRNA downstream 53943 14638968 ~ 14642798 (+) False G2299422
TU2630384 lncRNA downstream 53943 14638968 ~ 14642798 (+) False G2299422
TU2630385 lncRNA downstream 53943 14638968 ~ 14642798 (+) True G2299422
XM_021562149.2 mRNA upstream 64983 14513613 ~ 14517978 (+) False LOC110489442
XR_002468321.2 mRNA upstream 145050 14435905 ~ 14437911 (+) False LOC110487953
XR_002468322.2 mRNA upstream 158418 14422452 ~ 14424543 (+) True LOC110487954
XM_021559867.2 mRNA upstream 322865 14242757 ~ 14260096 (+) False LOC110487946
XM_036971410.1 mRNA downstream 102887 14687912 ~ 14726969 (+) False LOC110487967
XM_036971411.1 mRNA downstream 102887 14687912 ~ 14726969 (+) True LOC110487967
XM_036971032.1 mRNA downstream 176087 14761112 ~ 14793523 (+) False LOC110487969
XM_036971035.1 mRNA downstream 176087 14761112 ~ 14793523 (+) False LOC110487969
XM_036971036.1 mRNA downstream 176087 14761112 ~ 14793523 (+) False LOC110487969
TU2630335 other upstream 67527 14514009 ~ 14515434 (+) True LOC110489442
TU2630211 other upstream 163284 14418661 ~ 14419677 (+) True G2299272
TU2630121 other upstream 278729 14303736 ~ 14304232 (+) True G2299191
TU2629857 other upstream 359084 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other upstream 359084 14218901 ~ 14223877 (+) True LOC118936620
TU2630375 other downstream 50196 14635221 ~ 14638903 (+) True LOC110489384
TU2630658 other downstream 438608 15023633 ~ 15024931 (+) False G2299643
TU2630662 other downstream 438608 15023633 ~ 15024885 (+) False G2299643
TU2630647 other downstream 438700 15023725 ~ 15027132 (+) False G2299643
TU2630648 other downstream 438700 15023725 ~ 15024885 (+) False G2299643

Expression Profile