RNA id: XM_036971410.1


Basic Information

Item Value
RNA id XM_036971410.1
length 2563
RNA type mRNA
GC content 0.53
exon number 11
gene id LOC110487967
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14687912 ~ 14726969 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCGCGCACCCAGGCAGCTGTTGAAGGCGGCTGCGGTTCGAGCGAGATGCCAGCCTACCGTAGACTATACGCACGGCATACACTTCTAGTTCCACTGTCCCGAGTCCCGGTAGTAGTAAACCCCGCCCATCCAAAGCGGGACCGCAATGATTTAGAAGTTCAGGAATCCCACGTGACGTCACCTTAGGGGTGATGTAATGCTTCTGTAAATAGAATGTATTGTAATCCTGCCTCAGTCCAACGTGGTTCCTCTCAACTCAGTGCCGCTTGTCCGCTCCACTTGTTAGATTTGTAATGGAGATGAATGATGAACAGGACCGGCCCTATGGATGCAGCACTCCTGGCTGCTCACagCGGTTCCAAACAGAAGACCACCTGATGATCCACAGACACAAGCATGAGATGACCCTCAAGTTCTCCTCCATCAAGACTGATCCCCTCGCAGACCAGACCCCAACGCCGACCCGTTTCCTGCGTAACTGTGAGGAGGTGGGTCTCTTCAATGAGATCGAACAGGAGTTCTGCCAGGCACAGGAGGAGCAGAACAACAAACAGaCTCAGAATCTCCCTCAGAATGGATCATCATGTGCCAATCAGCCCCAGGCACAGCCCCACTCCCAACACCAACCACTGCCCCATGGTAGTATGAGGGGTCTAAGCTGCAGCATGGCTGGCCAACAAGCACTGCCCTCTGCCCAGTCCAACTCAGTCATCACCCAGGCCCCCTCCATGCTCACACACTCAGGACCAGTCCCTGGgcccctctcctccctactgcaCCTGAGgaacaacagacagagacagccccTGGCTGCCTCTATGcctggcactctgccagacccagACATGCAGGGAGCATCTGCCCAGCACATGTCTatggaaagacagatgtcTATGGGATCCAGTATGATGAGCATCCAAGGTCCCCTCCACAACACTTCCTGCTCTTCACCTCAGAGGGCTAAAACTATGGGTCACCCCCACCAACACcatcaccaacaccaacaccccGGAGCTGTCGCCAACAGCAACATGGATCCCACCATAGGTCACATGATGGAGATGATGTCACCGCGGCAACGACACACTCACCTGCAGCAGCCTCATCAGCACCTGCAGCAGACTCTGCCCATCTCCTACCAGCAGCACTGCCACGCCTCTCCACATCACCTGGGAAGCGCCCACAGCCAGGGGCACCAATCAGGGAATGTGCTGCATCATCAGGTTCACCAATCACCTCCCTCGCAACTGCAGGCCAGCCACACCCACCAAACCTCCCCTCAGCTGCCCCTCCACTCCATAGCTGTTCAGTCATCCCAGCAGACACATTCCCTGCATGCAGGCCAGGTGGCTGGAGGACGTCGCAGGAGGTCTGTGGGCCAGGACCCAGACGAGCGCAGGCAGAAGTTCCTGGAACGCAACAGAGCTGCGGCCACGCGATGCAGACAGAAGAGGAAGGTCTGGGTGTCTGCTCTGGAGAAGAAGGCAGAGGAGCTGACGCACAACAACATGCAGCTCCAGAATGAGGTGACCACTCTGAGGTCAGAGGTTGGTCAGCTGAAGCAGATCCTGCTGACCCATAAAGACTGTCTGGTTACCGCCCGCCAGAGAGAATCACAGGGGTACCTCAGTCCAGGGAGTTCGACAGGAAGTCCGTCCCCCCTGTGTCCCGGGTTGCAGCGGCAGGCCATCCAATCCAACAGCATCTCCACCTCCTCAGCCTCCTCAGATTAAAAATGAAAGCATGGATGGCTGAATTTCATTAGTTCACAAGAGTTGGATCCAGGGTTGCCCATGCACACACAGGGTTTAATCCCTGGTTCCAAGGGGTTGAATCAGTTCTAGAATCAGCTCACCCTTCCCATAATCATTGGTGgttgcatctcagtagtctaaatggctccctctcctgctctcctagCCTCAATGGACACAGGTATGACAGAACTGGACTGACTGGCCTCTACAAGCCTTGAGTCTCTGCTACCGTTGCACATTTACAGTGACTTTCCTGAAATTCCAGAAATCCCGGTTGGACGATTcccggatttcctgcttattgcCTCCTGATTTCCATAAAACCTGTGAATTTTGGTGAAGTTACAGAATTGTTGCAACCCTAGTCTATGTCTCTCCAACACTGTGATGATAGTCACATGTAAATTGGATCATATTGTGTCTTTAGGAATCTCAGTCAATCTATGTGTCTCTGTTAGTGTGAAATCAGAAATCCAAGTACTGCTCTAGGACTGTTCCAACCTGGGCTCTGTGTGCAAACATACCTGTTATTATGTCCTTTAGCTTAAAGTAGTGACTGCATACAGTTTTGTTAATGGTCCCACATGGGAGTCAaccccacaaccctggcattgcaagcaccaccatgctgtaccaactgagccacacgggacttCATCGCGTCAGCTTGTTCTCAGAATGTGACATGGTTAGGTCTTGGTTAGGTTTTGGTTAGGTCTTGGTTAGGTCTTGGTTAGGTCTTGGTTAGGTCTTGGTTAGGTTTTGGTTAGGTCTTGGTTAGGTCTTGGTTAGGTCTTGGTTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2630383 lncRNA upstream 45114 14638968 ~ 14642798 (+) False G2299422
TU2630384 lncRNA upstream 45114 14638968 ~ 14642798 (+) False G2299422
TU2630385 lncRNA upstream 45114 14638968 ~ 14642798 (+) True G2299422
TU2630415 lncRNA upstream 86675 14600580 ~ 14601237 (+) False G2299450
TU2630416 lncRNA upstream 86675 14600580 ~ 14601237 (+) True G2299450
TU2630476 lncRNA downstream 9995 14736964 ~ 14739942 (+) True G2299500
TU2630499 lncRNA downstream 14793 14741762 ~ 14741971 (+) True G2299515
TU2630501 lncRNA downstream 17265 14744234 ~ 14744449 (+) True G2299517
TU2630502 lncRNA downstream 20557 14747526 ~ 14747746 (+) True G2299518
TU2630504 lncRNA downstream 23074 14750043 ~ 14750577 (+) True G2299520
XM_036971545.1 mRNA upstream 49010 14582924 ~ 14638902 (+) False LOC110489384
XM_036971549.1 mRNA upstream 49010 14582924 ~ 14638902 (+) False LOC110489384
XM_036971546.1 mRNA upstream 49010 14582936 ~ 14638902 (+) False LOC110489384
XM_036971547.1 mRNA upstream 49010 14582938 ~ 14638902 (+) False LOC110489384
XM_036971550.1 mRNA upstream 53208 14582924 ~ 14634704 (+) False LOC110489384
XM_036971032.1 mRNA downstream 34143 14761112 ~ 14793523 (+) False LOC110487969
XM_036971035.1 mRNA downstream 34143 14761112 ~ 14793523 (+) False LOC110487969
XM_036971036.1 mRNA downstream 34143 14761112 ~ 14793523 (+) False LOC110487969
XM_036971033.1 mRNA downstream 35783 14762752 ~ 14793523 (+) False LOC110487969
XM_036971034.1 mRNA downstream 35835 14762804 ~ 14793523 (+) True LOC110487969
TU2630375 other upstream 49009 14635221 ~ 14638903 (+) True LOC110489384
TU2630377 other upstream 102887 14582961 ~ 14585025 (+) False LOC110489384
TU2630335 other upstream 172478 14514009 ~ 14515434 (+) True LOC110489442
TU2630211 other upstream 268235 14418661 ~ 14419677 (+) True G2299272
TU2630121 other upstream 383680 14303736 ~ 14304232 (+) True G2299191
TU2630658 other downstream 296664 15023633 ~ 15024931 (+) False G2299643
TU2630662 other downstream 296664 15023633 ~ 15024885 (+) False G2299643
TU2630647 other downstream 296756 15023725 ~ 15027132 (+) False G2299643
TU2630648 other downstream 296756 15023725 ~ 15024885 (+) False G2299643
TU2631085 other downstream 405298 15132267 ~ 15158541 (+) False LOC110487981

Expression Profile