RNA id: XM_036970717.1


Basic Information

Item Value
RNA id XM_036970717.1
length 5292
RNA type mRNA
GC content 0.48
exon number 17
gene id LOC110487975
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14933643 ~ 14972153 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGTTCTCACAGAATCTCTTAACTCACATAGCTCGCCaggtttttcccccaacaccaatCCACTCTTCCCCTCATTTTCTCTCGACTACGGTCCCCACCCCAGATTCCCGTGACATATTCCCAATCCAACACTTAATTGAGCAACTTGGATTCCTCACGTGCGGGGTTGATTTGTAGTTTGAACACGTGGCTCATTCAAAAAAGCCGGAATATCCTAGTTTTTTTTCCCTTCCCCTTCTTCATATTGGTTTTATTCAGAGGCGGGCACGAGCCTTAACGTGTGTGAATTTATCTGTCTCTTTGCCAAGGGGTTTGGAGGAAGACAAAAAAGTCGTGTCTCCTTTTTCACTCAGTCAGCTATCGTTTTGGAGAAACTGAATAAATAATTAAGATACAATTTTTTTGCGCGATAGAGAAGAGGCGAGTAAGCGCAAACGCGACGAGGTTGCCCGTCAAATATATCTGTGGCTTCAACGACTGGGGGAAGCACGCCACCGCCACTCCGTTGAGTAGTAAGGCGATTTTGGCGACTCCAAACCCGAGAGAGCAAATCACGATTTCCTTCTGCGTAAAGATTGTCAATTTCAGCGCAGACCATGAATAAGCTGTACATTGGAAACGTGAGTGAAGAGGCGAGTGCCGAGGACTTGGAAACTATATTTGAGCAGTGGAAGATTCCGCACAGTGGTCCGTTTCTCATCAAAACTGGTTATGCTTTCGTGGATTGCCCCGATGAAAAGATAGCAATGATGGCCATCGACATTCTTTCAGGTAAAGTTGAACTACATGGAAAACTCATAGAAGTGGAGCACTCGGTCCCTAAACGTCAAAGGAGCTGTAAGCTGCAGATCAGGAACATCCCGCCTCATCTGCAGTGGGAGGTTCTGGATGGCATGTTGGCTCAGTATGGCACAGTGGAGAACTGCGAGCaagtaaatacagacacagacacggcAGTGGTCAACGTTCGATACGGTGCCAAGGACCAGGCCAGACAGGCGATGGAAAAGCTGAATGGCTTCCTGATGGAGAACTTTGCCCTGAAGGTGTCGTACATCCCTGACGAGACGGCGGCTGCTGCCGCCCCGACCCTGGGAGGGGGTAAGAGGGGCTTTGTCCCCCGTGGCCCTCTGCGATCGGGTTCCCCAGGCCTGGGGGCGCGCCCCAAACTGCAGTCGGACGTCCCTTTGCGCATACTCGTCCCCACACAGTTCGTAGGAGCCATCATCGGCAAGGAAGGAGCCACGATTCGCAATGTCACAAAACAGACACACTCAAAGATCGACATCCACAGAAAGGAGAATGCGGGAGCAGCAGAGAAGCCCATCACGGTCCACTCCACCCCAGAGGGCTGCTCCAATGCCTGCAGGACCATCATGGAGATCATGCAGAAGGAGGCCCTCGACACCAAGTTTACTGAGGAGATTCCATTGAAGATTCTGGCTCACAACAACTTTGTGGGCCGACTAATCGGGAAGGAAGGACGGAACCTAAAAAAGATTGAAGTGGACACAGAGACCAAGATCACCATCTCCCCTCTCCAGGACCTGACGCTGTACAACCCTGAGAGGACCATCACAGTGAAGGGGTCCATCGAGGCGTGCTCCCGCGCTGAGGAGGAAGTGATGAAGAAGGTCAGGGAGTCGTATGAGAACGACGTGGCCGCAATGAACCTCCAGTCTAACCTGATTCCAGGACTCAACCTGAATGCCTTGGGTTTGTTCCCTGGTGGTGCTCCAGGTATGGGCCCCTCCATGGGACACAACGCCCCACCTCCCGGTGCCCAGGGTGGCTATTCCTCCTTCGGGAGCAGTTACTTCGGGGGCGAAGGGCCATTTTGGGCGTCTGTGCTGTCAGCGAGCAGCCAGCCCCTCTCTGGCCAGGGGCAGCCGGAGTCTGAGACGGTCCATCTGTTCATCCCGGCTCTGGCGGTCGGAGCGCTCATTGGAAAACAGGGTCAACACATCAAGCAGCTGTCGCGCTACGCCGGAGCCTCCATCAAGatcagtgcagatgaagtcCGTGTCGTAGATGCAAACCAGGTAGCACCTCCAGACGGCATGGACGCCAAGCAAAGGATGGTGATTATCGCGGGACCACCAGAGGCCCAGTTCAAGGCTCAGGGTCGTATCTTTGGGAAGCTAAAGGAGGAGAACTTCTTTGGGCCGAAGGAGGAGGTGAAACTGGAGGCTCACATCAAGGTGCCCTCCTTCGCTGCTGGGCGTGTCATCGGCAAGGGAGGCAAAACGGTGAATGAGCTGCAGAACCTGACCAGTGCTGAGGTGGTGGTCCccagagaccagacacctgatgagaATGACCAGGTCATCGTCAAAATCACTGGACACTTCTATGCAAGCCAGCTGGCCCAGAGGAAGATCCAGGAGATATTGTCCCATGTGAGGCGGCAACAACAGCCAAAACCCTCGCCTCGTGGGGAGGGGCCGCCCCGTGGGGACGGGCTCGCCCGGCCCTCCCGGAAGTAGACCTGAGGACCAGTGACTGAACCCCCCGAAGACAAAGCAGAGACCAGAGGGGTAAACACGGGCAGGGACGACGCGCTCATCTCAGGGGTTAAGGGTCATGGGTACCCGACTGTACACCCCATACCCCTCTCAATGACCTCCTTGACCAACACCACAGTGTGGATAgaccttaacccccccccccccccccccccccaaaacaaaatcACCTCTCTGTGATTATACTTCAGAGGGTTCCAACATTGTCACACACCCTCTCACCACACGGATGGGTCCTGATTGGTTCCTTTTTGTAGACAACACCAAGACATAAGAATTATCCCCCTCCCTGGTGTGGTAACACTCACCACCTCACATGTTGATGACAGGTGTTCATTTTGACACTCGTTTCAGTTTTTACCTTTTTTTTATTTAGACTTTTGTTTTTCGCCCTGGATGAAGTGTTTGTTTAATTGGTTGAAGCTTTCTCTTCTGAGTTTTCTGTGGAAAGAAAAAGGCATTGCTCTGAGTCCTGGTAGGATGATGAAAGATTACGGGAAGGGGTTTAGGCGGATGGGCAGGGCTAGGGGTAATACTCTTGTTTGATTGGACAGGAGCCCCAGCGGTGGTTTAATGGGGTGCCCCTGTGCTGGTATTGATAGTGGCATTTTATAAATTCGGATGCATTTTatagatatataaatatatatttagagTTGAGGATAAGTTAACACTTAAAGGGACGTGTTGAACAGTGTTGGCCAGGAAAACTAATTTAATATGCATTTTACTGAACTACCTCAGGATCTCTAGTACCTCAAGAAGACGACgagaaaaaaaataagaaaattgatatatataatatatatatgagaaaaaaaatcattttttaaaatttgctTTGTGGTATTTTGTATACTTTATAAAGCTAATAGTTcttgaacatttttatttttttaagaaaaTTAACAATTTGGTCAGCTGCCAACTGACCTTGCCTTCAACTCTAGTGCTCTCCAGCAGCATCAACGTGACGACGGTGGCCCTGTACATAGTCTGTCTGTACATAGAGCCAAGGGCGGAGTTGGCGCTCAACTCAGTTGGCTGCTGATGGGAGTATCAAGAGAGAATACATCACCTCAGTTTTCCTGAGGAATCCACCATCTTCTGAAAACTACAAAAAGCACGTCTATATTAGAGTAATGCCGATTCATGCCATCCGTACGTACTGCAGCGACGCCGTTTAGTTTTGGGATTCTGACACTTATTGTTGACggtacgtttaaatgttttattttctgtcTTCCTGGAAGGGCAATGGGAGGGGCCTGAGCACTGAGTTCTCTCTCTGTTGCCTTCATAGAAATAGACACGGCAGAGCAGCACGGTCtgtttgttgtttttctgttACCTGCTTAGGCCTTGAACCATCAGTCTCAAATTCGCTTATAGTGCaatacatggggaatagggtgaaaTTTGGAAGTTACTCCAAGTTTCTTACAAGTGAAAGTGCGGTCCACAGCCTGATGGGTTTAAAAAAGAGCGACTTTGCAGTGGCCCCAGTAGCCGCCGAGTCAGTCTGTTAGTGTAGTTTACTGCATGGTGAAGGTAGGGGGAGTCACACTGATGGATGCCTTTATGGAATCTACTGTAACTGtttaaccagcagcagcagctgtaacCTTTTGATTGAAGTGAGAGAAAGCAGTTCAAATTAGTATTCATTACAAAAAGCCAAGCAGCACACAACATTTTACTAAATGAACCCTGTTTGGGACGTGGaagataagtaaaaaaaaatatccaacaACAAAGAAATACTATACCAAGTTtatccttttttattttttatgcagAATGTAAATATGTTTTGATTGTGGTAAAAGTGCTTGAGTGTATCCATTCTTCCACAATAGAACGCTGTCTACCTCAGCCAAGGGGGGGTTTGTGGCGGCATGCGCCCTCACCTCCCCCCTAGCGCTCGCTCCCATACACCACCTAGCGCCCACGCCCTCACCCCTCCCAGCGCCCACACCCCGCCTAGCGCCCAtgccccccctccccatctcgtcATCTGTTTTTTGATCTACCTCTTTAGAAACACATTTTGAATTAGAGGCATACTTCTATTTATTAGATTTGGGTTCTTCTCCCGCTGTCCCTCCTTCCGCTGTCCCTCCTTCCACTGTCCCTCCTTCCGCTGTCCCTCCTTCCACTGTCCCTCCTTCCGCTTTCCCAGATATAAATGAAAATTAACAAATCATGTTGTACACTTTTAGAATTTAAAGGAATAATTGAAAAAGTGATCCGAAATATTTCCTTTGCTAGCATTTATATAATCTACTCTTGCTTAATTGATTGAAAATCCTCAAACAGCTTTTTCTGCTTTTATTTTTGGTAGTGGCTTCCATGTATTGAACTTTCTTGCTTGGGTTTTTTGTGAAAAAAGGTCTCTTCACCCGTGCATTTTTTTGATTCAGTGAATGGACGATAAGTAAAAAATCATTataaactgtaaaaaaaataataaaaaggggCCTGCCTTTTGTTTCTGGTTTGACACTAACAATAAATACTGTCTTTCTTACCTTTGTCTTCACGAATGCTACATTCATTTGATAGCGGTTTGTTCTGTTAGTATTTTCTGATGTGTAACATGGAAATTCATGTTTGTGGGGAAAGTGGAGGGACTGGGTTAGGGAGTCCCCTTTTTTTTGGAAAAGTGGTCTGCTTTAGGCACGATGCCCCCTCTGTGAACATGCTTGTGCCCCTTCACATCGCTCAACTTGTCAAACGCCTCTGAATAAAAACTAAGTGACATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2630610 lncRNA upstream 2349 14930886 ~ 14931294 (+) True G2299610
TU2630609 lncRNA upstream 2922 14930479 ~ 14930721 (+) True G2299609
TU2630601 lncRNA upstream 10920 14921395 ~ 14922723 (+) True G2299601
TU2630574 lncRNA upstream 53225 14879819 ~ 14880418 (+) True G2299577
TU2630528 lncRNA upstream 108767 14822575 ~ 14824876 (+) False G2299541
TU2630643 lncRNA downstream 25621 14997774 ~ 14998042 (+) True G2299640
TU2630644 lncRNA downstream 26066 14998219 ~ 14998550 (+) True G2299641
TU2630654 lncRNA downstream 53418 15025571 ~ 15028263 (+) False G2299643
TU2630650 lncRNA downstream 53544 15025697 ~ 15026402 (+) True G2299643
TU2630664 lncRNA downstream 59542 15031695 ~ 15031920 (+) True G2299644
XM_021559905.2 mRNA upstream 15008 14912317 ~ 14918635 (+) True LOC110487974
XM_021559901.2 mRNA upstream 25260 14895676 ~ 14908383 (+) False LOC110487973
XM_036971842.1 mRNA downstream 44871 15017024 ~ 15017839 (+) True LOC118946541
XR_005041400.1 mRNA downstream 47385 15019538 ~ 15023593 (+) True LOC118946527
LOC110487978 mRNA downstream 63246 15035399 ~ 15046389 (+) False LOC110487978
XM_036971598.1 mRNA downstream 159585 15131738 ~ 15188784 (+) False LOC110487981
XM_036971847.1 mRNA downstream 357914 15330067 ~ 15398500 (+) True LOC110489387
TU2630375 other upstream 294740 14635221 ~ 14638903 (+) True LOC110489384
TU2630377 other upstream 348618 14582961 ~ 14585025 (+) False LOC110489384
TU2630335 other upstream 418209 14514009 ~ 14515434 (+) True LOC110489442
TU2630211 other upstream 513966 14418661 ~ 14419677 (+) True G2299272
TU2630121 other upstream 629411 14303736 ~ 14304232 (+) True G2299191
TU2630658 other downstream 51480 15023633 ~ 15024931 (+) False G2299643
TU2630662 other downstream 51480 15023633 ~ 15024885 (+) False G2299643
TU2630647 other downstream 51572 15023725 ~ 15027132 (+) False G2299643
TU2630648 other downstream 51572 15023725 ~ 15024885 (+) False G2299643
TU2631085 other downstream 160114 15132267 ~ 15158541 (+) False LOC110487981

Expression Profile