RNA id: TU2631085


Basic Information

Item Value
RNA id TU2631085
length 536
RNA type TUCP
GC content 0.55
exon number 3
gene id LOC110487981
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15131738 ~ 15188805 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACGTAGCGAGGCGATCACCAATCAAGACCTACACACAGCTACCGTGAACGAAAATCCACATTTATAGCGGATTTAAAGACAGTTTAGGGTGCGCGCCACCTGTTGCTGGGATGAAACCCTCGCCAGGCAATGGGGTGAGCCTCGAGACGCATCGTGAGAAATTGCTGTCCAACGGAGGCTGCGGGGTGTCAGACACCGTGACTGCTGTCCAACCTGAAACTGGTCCCGGATCCCCAATGACTGACAAACCGGGAGCGGGAGAAACTACAGATGCCAAAGGAATCCCTAGGCGGAGCAGTATTATCAAGgaTGGGTCTCGTGCTGGTCGTGAGAGGAAGAAGACGGtatccttcagcagcagtctctCTGAGAGGAAGATCAGCAGCGCTGCAGACTGCATCAGCGCCATGATGGAGGGTACTGAGTTTCGGAAGGTGCGCTCCAACTCACGAGTCTACCAACGCTACTACCTGCTGGAGTCAGGTCTGCAGGCCCTGCGATGGGAGCCCTCCAAGAAGGAGTCAGACAAGGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2631081 lncRNA upstream 703 15129638 ~ 15131564 (+) True G2300008
TU2631076 lncRNA upstream 5449 15126571 ~ 15126818 (+) True G2300003
TU2630720 lncRNA upstream 10340 15121726 ~ 15121927 (+) True G2299696
TU2630718 lncRNA upstream 11942 15119940 ~ 15120325 (+) True G2299694
TU2630713 lncRNA upstream 14601 15117403 ~ 15117666 (+) True G2299689
TU2631102 lncRNA downstream 1901 15160442 ~ 15161599 (+) True G2300028
TU2631103 lncRNA downstream 5000 15163541 ~ 15163756 (+) True G2300029
TU2631104 lncRNA downstream 13699 15172240 ~ 15174303 (+) True G2300030
TU2631082 lncRNA downstream 28045 15186586 ~ 15188805 (+) True LOC110487981
TU2631115 lncRNA downstream 47482 15206023 ~ 15206393 (+) True G2300038
LOC110487978 mRNA upstream 85878 15035399 ~ 15046389 (+) False LOC110487978
XR_005041400.1 mRNA upstream 108674 15019538 ~ 15023593 (+) True LOC118946527
XM_036971842.1 mRNA upstream 114428 15017024 ~ 15017839 (+) True LOC118946541
XM_036970718.1 mRNA upstream 160114 14934240 ~ 14972153 (+) False LOC110487975
XM_036971847.1 mRNA downstream 171526 15330067 ~ 15398500 (+) True LOC110489387
XM_036971418.1 mRNA downstream 246189 15404730 ~ 15413624 (+) False LOC118946488
XM_021559916.2 mRNA downstream 286906 15445447 ~ 15455152 (+) False LOC110487983
XM_021559915.2 mRNA downstream 286945 15445486 ~ 15455152 (+) True LOC110487983
XM_021559918.2 mRNA downstream 300154 15458695 ~ 15474470 (+) True LOC110487984
TU2630647 other upstream 105135 15023725 ~ 15027132 (+) False G2299643
TU2630658 other upstream 107336 15023633 ~ 15024931 (+) False G2299643
TU2630662 other upstream 107382 15023633 ~ 15024885 (+) False G2299643
TU2630648 other upstream 107382 15023725 ~ 15024885 (+) False G2299643
TU2630375 other upstream 493364 14635221 ~ 14638903 (+) True LOC110489384
TU2631280 other downstream 258685 15417226 ~ 15417507 (+) True G2300167
TU2631539 other downstream 722140 15880681 ~ 15882161 (+) True G2300406
TU2631752 other downstream 1044932 16203473 ~ 16212890 (+) False dss1
TU2631753 other downstream 1044932 16203473 ~ 16252597 (+) True dss1
TU2632763 other downstream 1365969 16524510 ~ 16525394 (+) True G2301452

Expression Profile