RNA id: XM_036971418.1


Basic Information

Item Value
RNA id XM_036971418.1
length 1375
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC118946488
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15404730 ~ 15413624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acAACCACTACGGATCATGTTGTGGTCAAGTCATCAGGCTACATTGAACTGATTATCATAAACTGTATTATATGATGATTACATAACTACATAGTCCTTACCTAGAATGTAAACTTTAAAATGACATAACCATGTTATTATTACCTACTATACACCAAGTATGTGAAGATATTGGGACTTGTAAGTAACACAGTAACTGCTTCACCAGTTTAGGTTATTTTGTGACTCTTTCTAAATGGTGTTGCAGATATTCTCCAGATCAGCACAGCAGAGTCAGCAGCTAAAGCTGAGGAGACCTGGGGACAACTACGGCACCTAGACCAGGAGGTGAGTTCTCTGGGGAAGGAGGTGGCAGAGCTGGGCCAAGTAATGAGGAGTATGGTTCACCTGATGGAGTCCCTCATCTCCGGACCCAAACCCCTCTATCCTGCACACTTTGTACCTGGACACCCCACGTACCTGCCCCACCCTGCGCCAACATCCCACGCCACCCCCCCACAGTCCTATCCTTCCCCCTCTCAGACTGGACCTCTCTGGGAAGACACCCCCCTCACCACCCCCTCTCCTTGCACCTCTCCACTTGTTGGCCATGTCCAGCGGCATCCTGGGATGTTCCACGTGGATCCCGCCCTCACCGCCTTTCCACACAGACCACAGAACCTCCACCTGGTCTACCCTATGTGCCCAGGCCCGGCCTCCTCCCCCCTTTCACGCCCCtaccccccctccttctccctcacggACGCCTCAACAGAGCTACTGCTCCCCTCGCCCCTCACCTCTCCCGGGAAGCCCCactgtggagggggagggggcgcTGGGTCCTTCAGGTTGCGGGCACGGAGTCTGGAGACCACACAGCCACCGCGTGATAGGAGAGGAGGGGCCCCTCAGAGCTCCGGGAGCCTGCCCCGCCCTGGAGGGAGCTACCAGCACATGGATTTGTAGCGGACTGAACTGGACTAAAGTGGACTCTCACTTAGATACTGGACTAAAGAGATACTGGACTAAAGGAGTGGATGGGACTAACAACCAGGTCCCTATATCATCAGACTACACTCTTACAGGGACACACAGATCTCTGATAATACTGATAACATTTCATTTTCTATCTCCGTTTCCAaggcacatttttattttcaaattgCATGACAAAAGTAGAGGGGCAGTAGGTAGTCTATAGGTAGCTACATTGTATAGACGTTCCAGTAGTGTTCTGGAGGGGTATAGAAGCAAGAATGTAGCTGTGACGTTGTGTTATTCTCTGGAGAAGACCCTGGGGgtctgaaggagaggagaagagcagtACTGCACaatgacagaggaggaggaggaggggactgagtCGCATCAGGGATGGATGGAATAGTAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2631211 lncRNA upstream 9678 15394422 ~ 15395052 (+) True G2300126
TU2631263 lncRNA upstream 18712 15383457 ~ 15386018 (+) True G2300152
TU2631170 lncRNA upstream 110928 15284747 ~ 15293802 (+) True G2300087
TU2631154 lncRNA upstream 150053 15253052 ~ 15254677 (+) True G2300072
TU2631153 lncRNA upstream 150871 15253052 ~ 15253859 (+) False G2300072
TU2631293 lncRNA downstream 25601 15439225 ~ 15439460 (+) True G2300180
TU2631235 lncRNA downstream 41589 15455213 ~ 15458560 (+) False G2300147
TU2631247 lncRNA downstream 41589 15455213 ~ 15458560 (+) False G2300147
TU2631248 lncRNA downstream 41589 15455213 ~ 15458560 (+) False G2300147
TU2631237 lncRNA downstream 43047 15456671 ~ 15458560 (+) False G2300147
XM_036971847.1 mRNA upstream 6230 15330067 ~ 15398500 (+) True LOC110489387
XM_036971598.1 mRNA upstream 215946 15131738 ~ 15188784 (+) False LOC110487981
LOC110487978 mRNA upstream 358341 15035399 ~ 15046389 (+) False LOC110487978
XR_005041400.1 mRNA upstream 381137 15019538 ~ 15023593 (+) True LOC118946527
XM_036971842.1 mRNA upstream 386891 15017024 ~ 15017839 (+) True LOC118946541
XM_021559916.2 mRNA downstream 31823 15445447 ~ 15455152 (+) False LOC110487983
XM_021559915.2 mRNA downstream 31862 15445486 ~ 15455152 (+) True LOC110487983
XM_021559918.2 mRNA downstream 45071 15458695 ~ 15474470 (+) True LOC110487984
XM_021559923.2 mRNA downstream 194004 15607628 ~ 15610456 (+) True LOC110487988
XM_021559947.2 mRNA downstream 636504 16050128 ~ 16058601 (+) False mterf3
TU2631085 other upstream 246189 15132267 ~ 15158541 (+) False LOC110487981
TU2630647 other upstream 377598 15023725 ~ 15027132 (+) False G2299643
TU2630658 other upstream 379799 15023633 ~ 15024931 (+) False G2299643
TU2631280 other downstream 3602 15417226 ~ 15417507 (+) True G2300167
TU2631539 other downstream 467057 15880681 ~ 15882161 (+) True G2300406
TU2631752 other downstream 789849 16203473 ~ 16212890 (+) False dss1
TU2631753 other downstream 789849 16203473 ~ 16252597 (+) True dss1
TU2632763 other downstream 1110886 16524510 ~ 16525394 (+) True G2301452

Expression Profile