RNA id: XM_021559916.2


Basic Information

Item Value
RNA id XM_021559916.2
length 2018
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC110487983
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15445447 ~ 15455152 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACGTGCTGTGTGACGTGGCAGAATGGGCGGAAGAGGTTGTTTGTGTTTTGGTTCTAGTAAAAGGGGAAGTTGCAAGAAGAAAGAAAAAGGAGGAGACGTGATCGGGGTTGTTGAAATTATTTCTGAAGCCCTGACAGCATAGTCAGACGTGCGGGACAAACACTGACCGGGGGATCTGACTAGGCCATGGCCAACAGGGGAGGAGCTACGAGACCCAACGGGTCTAACGCTGGTAACAAGATCTGCCAGTTCAAGCTGGTACTTCTGGGGGAGTCGGCAGTGGGCAAGTCCAGCCTGGTGCTCCGGTTCGTCAAGGGACAGTTCCACGAGTTCCAGGAGAGCACCATTGGAGcGGCCTTCCTGACCCAGACAGTGTGTCTAGACGACACGACGGTGAAGTTTGAGATCTGGGACACGGCAGGACAGGAGCGCTACCACAGCCTGGCACCCATGTATTACAGAGGGGCGCAGGCCGCCATCGTGGTCTACGACATCACAAATGAGGAGTCATTTGCGCGGGCCAGGAACTGGGTGAAGGAGCTGCAGAGACAAGCCAGCCCCAACATTGTCATCGCCCTGTCTGGCAACAAGGCTGACCTCGCCAGCAAGAGAGCCGTGGACTTCCAGGATGCCCAGTCATATGCAGACGACAACAGCTTACTCTTCATGGAGACGTCGGCCAAGACGTCTATGAATGTGAACGAGATATTCATGGCTATTGCAAAAAGATTGCCCAAGAGCGAGCCTGCGGCCACAGGAGCTAACAGCGGGCGGAACAGGGGCGTCGACCTAACGGAAGCCGCCCAGCCAACTAAGGCCCCCTGCTGCAGTACCTAAAgcgaaatccccccccccccactgcagtAACTAATGTGATGACCCCCGCCCGCCCAAAACTCTCTGATCTGCAGCAATGAAAAAAGATGCCCTTTGAACCCCCTTCTCATtctacccttctcctcctctctgcagtaACTAATGCAAAGCAACGCCCTCATCTATAGTTCTCTCAACGACGccctgcccctccctctcccctactGGTTCTGCTGTTACTAATTGAGACACCTCACACCTTCCTCCTTCTTTTCTGAAATTAGTGCCCGCCTTCCCTACCTCATTCTTCCTGACTATTGGCAAGCAGCAGGACTAAGGGACGGGGCAACTGGTGGTGGTCTCATCTCCTGGGTATAGCTACAGACTATCGCTCTGTGTTTCTAACACAATCTCTGtcctttctgtttgtttttttgttttgtttatttttttttttagtggGAATTATGGATGCATGTATCACTACATGGCCTAACTTGATGATGAGAAAAAATCTGTGTTAACTTTATTCAGCGGCACAAAAACATAtatttgagagggagagaggctccAAAGGTTTGCGAGGGCTAATTCTAAAGAAAAGACTGTTTAGCAGTGGTCTTGGGTTCCTTCTAGTTTATTTCTGTTGTTCTCTGTCTACCCTTATCTGTCTCTTGAGTAATGTATTCATATGCTTTGCCCACTAAACCTTTAGTAGCGCTAGTATAGAGTttctcccttctgtctctctttgtcccaTCCCAGAGCCTTGCCTGCTTCTAATGCTCAGCCCCAAAGCAAACCCTAACCCCTTAGGTACTTCATGTAGGTCTAAGAGGATTTGAGATCTAAACAATCGGGTGAACATTCCACCTAGCCTATCGGAGGGCATGGTGGAGCGATCCCCATAATGCTCACACCTATTCAATTCTCTCAGGTCTACCTAAGGGGTTAGAGGGCAATTTGGGATTGGGCATAGCTGTCCTAGTGGCATCGTGCAATGGTTCACAGTATTGGCTCTGTGATTTCTTCAGTGTCTGCAAGGACCTTCACACTGCAAAGCAACCTGCCTCCACAcccaccctaaccctacctaTCACCACCTTACTACCCCCAACCCTACCTGCTATCACCACCTTACTCCCCCCAACCCTACCTGCTATCACCACCTTACTCCCCCCAACCCTACCTGCTATCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2631293 lncRNA upstream 5987 15439225 ~ 15439460 (+) True G2300180
TU2631278 lncRNA upstream 32031 15413130 ~ 15413416 (+) True LOC118946488
TU2631211 lncRNA upstream 50395 15394422 ~ 15395052 (+) True G2300126
TU2631263 lncRNA upstream 59429 15383457 ~ 15386018 (+) True G2300152
TU2631170 lncRNA upstream 151645 15284747 ~ 15293802 (+) True G2300087
TU2631235 lncRNA downstream 61 15455213 ~ 15458560 (+) False G2300147
TU2631247 lncRNA downstream 61 15455213 ~ 15458560 (+) False G2300147
TU2631248 lncRNA downstream 61 15455213 ~ 15458560 (+) False G2300147
TU2631237 lncRNA downstream 1519 15456671 ~ 15458560 (+) False G2300147
TU2631239 lncRNA downstream 1519 15456671 ~ 15458560 (+) False G2300147
XM_036971418.1 mRNA upstream 31823 15404730 ~ 15413624 (+) False LOC118946488
XM_036971847.1 mRNA upstream 46947 15330067 ~ 15398500 (+) True LOC110489387
XM_036971598.1 mRNA upstream 256663 15131738 ~ 15188784 (+) False LOC110487981
LOC110487978 mRNA upstream 399058 15035399 ~ 15046389 (+) False LOC110487978
XR_005041400.1 mRNA upstream 421854 15019538 ~ 15023593 (+) True LOC118946527
XM_021559918.2 mRNA downstream 3543 15458695 ~ 15474470 (+) True LOC110487984
XM_021559923.2 mRNA downstream 152476 15607628 ~ 15610456 (+) True LOC110487988
XM_021559947.2 mRNA downstream 594976 16050128 ~ 16058601 (+) False mterf3
XM_036971470.1 mRNA downstream 595090 16050242 ~ 16058601 (+) False mterf3
XM_021559946.2 mRNA downstream 595292 16050444 ~ 16058601 (+) False mterf3
TU2631280 other upstream 27940 15417226 ~ 15417507 (+) True G2300167
TU2631085 other upstream 286906 15132267 ~ 15158541 (+) False LOC110487981
TU2630647 other upstream 418315 15023725 ~ 15027132 (+) False G2299643
TU2630658 other upstream 420516 15023633 ~ 15024931 (+) False G2299643
TU2631539 other downstream 425529 15880681 ~ 15882161 (+) True G2300406
TU2631752 other downstream 748321 16203473 ~ 16212890 (+) False dss1
TU2631753 other downstream 748321 16203473 ~ 16252597 (+) True dss1
TU2632763 other downstream 1069358 16524510 ~ 16525394 (+) True G2301452
TU2632809 other downstream 1181387 16636539 ~ 16639641 (+) True LOC110488017

Expression Profile