RNA id: XM_021559946.2


Basic Information

Item Value
RNA id XM_021559946.2
length 1586
RNA type mRNA
GC content 0.47
exon number 8
gene id mterf3
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16050128 ~ 16058601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGCTGCTTCAATGAGACATGCCCTCTTTTAGCCAGCAGATCCGACCTGCTTGCTTACAGCTGCACTAGGGTCTGACAACATTGATCTGTATATTAAGACACTACGGAACCAGCGCAAGATATGGCTCAGAAAACAtacctcaatccagggatgagAAATGCGTTATATTCCGAATTATCCCAACTGTTACACTGAGAAGATTGAACAACTGCTAGTTTTGAAAGAAAACGATATCTACATGGCTTTAACCTGTATCCAGCATTGTCAGAGATGCACCAGTTTACTGAGGTCAAGGAGTGTTGGTATCACCACCCTTCAGTATTCCACAGATGCCCAGCATTGGCCTGCAGCCCTCTGGAATTCTTTCATTGTTCGAGTCTTGCCCTCTGTGCTCCAGAGAAGTCCGAATCCATCTCAGACGCGACAGAGGTGGAATCTAGGAGTGCGGAGTTACTGTGAATCTCATGCTAAGGTCCAACCATCTCAAACGAAACACGGGAATACTGATGAGTTACCTGAGACTGATATGGTGTCATATCAGAATCCTGTCTCCCATCAACTCATAGATGGAGGGATGCTTCTGAAGGAGTGGCAGACAGCTTTTGATTTGGATGATGCCCCAGGCCACTCTGCATTAGAGGAGATCAGTCACGAGGAGGCAGTTCATATGAACATCCCAGCTGCCCTGCCTcctgtctccatctccctgaAAGACTATGTCAACGAGTCAGAGACGCTTGGAAAGCTTATACAGCTAGGTGTTCAGCTATGGAAACTGGAGCAGAGGCCTAACGTGGGTTCCATGTTGCTGAGGCTAGACTTCCAGACAGACGTGACCCCACGGCTGGTCTTCCTGAAGCAGCTGGGAGTGGACGATTCTCGCCTGGGTTATCTGATCAGCCACAACCCCTTCATCCTCACAGAGAGCCTGGAGAACCTGCAGGCCAGGGTGGCATATCTTAGGTCCAAGAAGTTCAGCGCTGAGTCTGTGGCTTCCATGGTGTCCAGAGCTCCGTACCTGCTGAACTTCAGTGTGAAGAGGATGGACAACCGCCTTGGATTCTACCAACAGCAGTTAGGCCTTAGTGCTCAGAAGACACGGGATGTTGTGGCTCGCCTTCCCAGACTTTTGTGTGGAAGCTTGGAGACAGTTAAGGAGAATCTTAAGATATGCAAACTGGAGATGGGGTTTCGTGAAAATGAGCTCCAGCACATTGTCACTGTAATCCCCAAAGTTCTTACTGCTAACAAGAGGAAACTGACCCAGATATTTGACTACATCCACAACACCATGAACATACCCCATGACCTGATTGTAAAGTTCCCACAGGTCCTGAATGCAAAGTACCTTCGTATCAAAGAAAGACACCTGTTCCTGCAATACCTAGATAAGGCTCAGTATGACCCTGCCAAGCCTAACTACATCTGTCTGGACAAGCTTGTCTCCCTGCCAGATGAGGCCTTCTGCACTGAAGTGGCATCAGCCACACTAAAGGACTTTGAACTGTTTCAGAAGACAATGTAATTAATAAAACACTACAGTTTCTGTATATGTGTGTTATGTGAATAAATTTGTTGAAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2631647 lncRNA upstream 45273 16004892 ~ 16005171 (+) True G2300488
TU2631639 lncRNA upstream 52591 15997561 ~ 15997853 (+) True G2300480
TU2631534 lncRNA upstream 79062 15970441 ~ 15971382 (+) True G2300401
TU2631523 lncRNA upstream 99239 15948523 ~ 15951205 (+) True G2300391
TU2631606 lncRNA upstream 114062 15936144 ~ 15936382 (+) True G2300460
TU2631739 lncRNA downstream 26923 16085524 ~ 16086420 (+) True G2300549
TU2631743 lncRNA downstream 32905 16091506 ~ 16091764 (+) True G2300553
TU2631768 lncRNA downstream 88267 16146868 ~ 16162578 (+) True LOC118946491
TU2631806 lncRNA downstream 157258 16215859 ~ 16217260 (+) True G2300614
TU2631864 lncRNA downstream 260314 16318915 ~ 16319370 (+) True G2300663
XM_021559923.2 mRNA upstream 439988 15607628 ~ 15610456 (+) True LOC110487988
XM_021559918.2 mRNA upstream 575974 15458695 ~ 15474470 (+) True LOC110487984
XM_021559916.2 mRNA upstream 595292 15445447 ~ 15455152 (+) False LOC110487983
XM_021559915.2 mRNA upstream 595292 15445486 ~ 15455152 (+) True LOC110487983
XM_036971418.1 mRNA upstream 636820 15404730 ~ 15413624 (+) False LOC118946488
XM_021559948.2 mRNA downstream 243 16058844 ~ 16062141 (+) True LOC110488002
XM_021559951.2 mRNA downstream 34497 16093098 ~ 16098054 (+) True LOC110488007
XM_021559960.2 mRNA downstream 82690 16141291 ~ 16143786 (+) True LOC110488010
XR_005041344.1 mRNA downstream 88294 16146895 ~ 16163427 (+) False LOC118946491
XR_005041345.1 mRNA downstream 91706 16150307 ~ 16163427 (+) False LOC118946491
TU2631539 other upstream 168283 15880681 ~ 15882161 (+) True G2300406
TU2631280 other upstream 632937 15417226 ~ 15417507 (+) True G2300167
TU2631085 other upstream 891903 15132267 ~ 15158541 (+) False LOC110487981
TU2630647 other upstream 1023312 15023725 ~ 15027132 (+) False G2299643
TU2631752 other downstream 144872 16203473 ~ 16212890 (+) False dss1
TU2631753 other downstream 144872 16203473 ~ 16252597 (+) True dss1
TU2632763 other downstream 465909 16524510 ~ 16525394 (+) True G2301452
TU2632809 other downstream 577938 16636539 ~ 16639641 (+) True LOC110488017
TU2632840 other downstream 611006 16669607 ~ 16676671 (+) False G2301522

Expression Profile