RNA id: XR_005041345.1


Basic Information

Item Value
RNA id XR_005041345.1
length 2002
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC118946491
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16146868 ~ 16163427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGGTTTGGATAGAACCAAAACGGATTCTATTCCTTGCTTCATATATGTCACCCCTAAATGTTCGATATAGAACCTCATGTGTTCTTCTTCACTGAACCAAAattggttccacatagaacccttGGATTCCAtatagggttctatatggaaccaattTCGGTTCTATATATAACCTAAAGGGGTGCCATATATGAAGCAAGCATAGAACCTTTTGTGGGTTCAATTCAGATACtttatttctaagagtgtataaaaTACATGCAAATTATACAGTTTGCGGTTTGGCAAAATCTTTTGCAATATAAaccatcaatgcaaatgcaataaAACGGTCTTTAAATTTACTTTCACATAGGCACATAATTTATTTTTTCATTATCGTCAACACGTTTTTTCCCAAAGTGTGGCATTAATTTATTTCAAAATGGTGATGAAAAAGCAATTATTGTCGCAATCATTTAAATCCAAAACCTCTTTGATTAAACACCACACATCATTCAAATTGGAGCTATAAAATTAAGAACAATTCGCCTGTAATGATTATGGACTGGGTTTATTTTGGGAAGGTGGAATAAAACTGTATATAGCATAAATTATCCCCTAATTATACGCCAGTGTCGCCCTCAATTATCCTCTTATCAAAAATGGTTGTCTAAATGCAGCGTTTAGTTTCAATTTTCTCCATTTCTATAACAAGAACTTGGTACCTTGCTATTATTGCCAGGCTTGTTATTTACTTTGTGGCATTTAAAAAGTGCACAACCCAGCCGGATAATCATTTTCCATCAGTGGACCAAGCGAGAAGCACAGAGACAGTTGGTAGATATGAAATATATGAAATGCCTTTTGATATTGGATTTTAAACCAAGGCCTTCATTAAAAAACCGAGACGTTTTAGGATACCTCTATATGGACATCATATAGTTCTACCCCACCACCAGCACCACTGCCTGTCACCCCCCCAACCCTATATTTCTGTTTCTCTTCATCACCCAATCCTCCtgtccctctcttttctcccatctccatcctaTTTCTCTTCCAaccaccccctcaccccctctccatctcctcctcctcaccttgccccctctttctctctcccattctcaccCAGACCTCCTcgcccctcactccctctctcgctctctcactccatcccccaccctcccccacccccccctctctcttgttgGTTTCCACAGCTGCAGAAAGTGAGGGGAGAGATGACCGACCAGAGAATTGGCCCTTCGGAGAGCGGCGGGCCATCCTGATGCTATTAGGCTCGTGGCTAATAATAGGCGTTTCAATCCGGGAGGAGATCAATCAGGGGGAATCATGGGGAATGTTCGGAGCAGCACTTTTACACATCAGCCCAGATGGATGAAATTACACTTGTCTGTTTTTAGTTGCATTACTCCCAAATTGGTTGTCtactttttttctctcacttattctctctctgcctctccgtccttcctctctctctttctttctccactCATTCATGTGTCACTGGGCTACTAAAAGGATTCAGGCGCAAAATTCCCTGTCATTTCTGTCTTGTCCTTTGCTTAGCCGCACTCTCTCGATTCTCTGTCACTTGCATATGGACTTAGCTGACATCACTTGAGGTCTCGTCTTATAGGTTGTTTTACTTCCAGTGATTTGGCTGGGTTAGGTGCAATGTTATTCTTTGTAAAAATGAACTttttagtaaaaaataaaatgatttgCACAGTGAAAGGATAAGTATTGAATACCTGAATAATGAGTAACAAATATCCTTATTTCAGTACACATTTGAATGCAATATTGTGTCTATTCTACTACCACATATACTTACAATCTATTTGTGTAGGCCTGTGTAGAATGAAGACAAACTATTTTCAGACATGCTTTTTCTTTTAATAATATTACAGCTCCTGAAATGCATTGAATGTAATATTTAATATTTCAATCTAATTGTATTAAATCTAAATAAATATTTCAGAAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2631743 lncRNA upstream 58543 16091506 ~ 16091764 (+) True G2300553
TU2631739 lncRNA upstream 63887 16085524 ~ 16086420 (+) True G2300549
TU2631647 lncRNA upstream 145136 16004892 ~ 16005171 (+) True G2300488
TU2631639 lncRNA upstream 152454 15997561 ~ 15997853 (+) True G2300480
TU2631534 lncRNA upstream 178925 15970441 ~ 15971382 (+) True G2300401
TU2631806 lncRNA downstream 52432 16215859 ~ 16217260 (+) True G2300614
TU2631864 lncRNA downstream 155488 16318915 ~ 16319370 (+) True G2300663
TU2631871 lncRNA downstream 167293 16330720 ~ 16345191 (+) False G2300670
TU2631872 lncRNA downstream 167293 16330720 ~ 16347102 (+) True G2300670
TU2631873 lncRNA downstream 173077 16336504 ~ 16342791 (+) True G2300671
XM_021559960.2 mRNA upstream 6521 16141291 ~ 16143786 (+) True LOC110488010
XM_021559951.2 mRNA upstream 52253 16093098 ~ 16098054 (+) True LOC110488007
XM_021559948.2 mRNA upstream 88166 16058844 ~ 16062141 (+) True LOC110488002
XM_021559946.2 mRNA upstream 91706 16050444 ~ 16058601 (+) False mterf3
NM_001160587.1 mRNA downstream 40069 16203496 ~ 16212837 (+) False dss1
XM_036971473.1 mRNA downstream 65146 16228573 ~ 16351043 (+) True LOC110488013
XM_021559967.2 mRNA downstream 300136 16463563 ~ 16487955 (+) False LOC110488016
XM_036970996.1 mRNA downstream 300156 16463583 ~ 16480606 (+) False LOC110488016
XR_005041306.1 mRNA downstream 300156 16463583 ~ 16485916 (+) False LOC110488016
TU2631539 other upstream 268146 15880681 ~ 15882161 (+) True G2300406
TU2631280 other upstream 732800 15417226 ~ 15417507 (+) True G2300167
TU2631085 other upstream 991766 15132267 ~ 15158541 (+) False LOC110487981
TU2630647 other upstream 1123175 15023725 ~ 15027132 (+) False G2299643
TU2631752 other downstream 40046 16203473 ~ 16212890 (+) False dss1
TU2631753 other downstream 40046 16203473 ~ 16252597 (+) True dss1
TU2632763 other downstream 361083 16524510 ~ 16525394 (+) True G2301452
TU2632809 other downstream 473112 16636539 ~ 16639641 (+) True LOC110488017
TU2632840 other downstream 506180 16669607 ~ 16676671 (+) False G2301522

Expression Profile