RNA id: TU2632809


Basic Information

Item Value
RNA id TU2632809
length 3080
RNA type TUCP
GC content 0.42
exon number 2
gene id LOC110488017
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16603599 ~ 16639641 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGCTCAGCCACCACTGTCCCGCTCTAAGAGAGACCCATCTCTTCCAGCTCAGCCACCACTGTCCCCCTCTAAGAGAGACCCATCTCTTAAAGTTCAGCCACCGCTGCCATCGCGTTTTTAGTCTGCCTCGCTTCCACTTTCTTGCTGGTGTCCACCTGAGGGCAATTTTAGTAGTGTTAACATAAAGACCAAAAACGAAACATTCGGGGCCGgcttcccggacacagattaagcctagtgaTTAACCTCACGGTGTTGACAAGGAAGGGACAAAGAAGTCCGACAATATTTTTATGAAGGTATGTATTATTGACAATGTACAACAGAATAaaggcatttataaataaaatgggtacatttcacatttttaagaCGTCACAAAATAATTTACATAAAACTTCTCTGGGTATATATAGTTGTTGCTTCTTTTAATTTGACCAAAACTAATTTAAACAGAAAAATCTAAAATTGTGAATAACATACTGTAAGATACTTTAAATCAAGGTAGATAACCATTTTCCTGACAACCAAATTCAGAACAATTGCCGTCCATTTACAGTCGGTGCAATTTCGTCAATCTCCTTGATCAATCCAATTATCAAAATGTGTAATGTTTTGACTTTCAAGCAAATTGTAACAaacaaatggtaccctattccctggaaagtgtactacttttgatcagagccctatgggctcaGGTTTAAGAGGTTTGCATTacatacggaatagggtgccatttgggatacagacttCTGAATAGTGCCAAGACCTGTCAGACCAATCTATGGTATTGAATTAATTTAATTGAGAAGCTACATCAACCTGTAATAATTCTAAAGTGTACACCCCATTCAGTTACCTTTCCACGGCACAGAAAATATACAGATAAAATTAATATGCAATTAAACTAAAATAACTAACTAATTTGCAGTCTTCTTAATGTACACTTACAATATCTGCTAAGTTGCCTTAACATCCAGCTTTAAGCAGGTGAGTTACACATTGTGAAGGGTGTTAAATAATGGGCACTATAACCAATGGATCAAAGTGGTATCTAAATGATTCAACAACTGGATATGAAGCGATTCAGTGTTGCCTTAAATCCATACAATTTTGGCCGTTGTATTTAGGCTACCGCCAAGGTGAGGTACAAAATGGATGAAGTAGCAGATATACAAACATCTTGGTTTTACTATGCCATTTAAAATGTTAAATTAAATAACCTTCCCTTGTAAAAACCTTACATGGCATAATTGGAAAATACACACAAAGAACATGGGTTTGACTCGTTGGCTGAAAGAAGGCTTAACGGTTGGTGGATATTGTCCATCTGTAGGTAAATGACAGGCTCAACATGAAGTACTGCTTTTTTTCTTTAGCAATAAttccccacccccccccctttttaaAATACATCATGAAGTATCACGACCAAGGATGGAAATTAAGCTAGCCCCGATGTTAGCACTTTTCAGACTGGGCTAGTAGAAAATGTGCTTAACTAGCCCGGCGGCGAGTGAAATTAGGTGTTTTACAATATAGCACAGAATACCAACCGGGATAGTAGAAATTACAGTCTACTAGCCCAGCAAGCCACTGCCCAAAATCCTTAAGTTCCAACCTTGATCACGAAGCGTCAGATTTCAATGCAAACTTGGCACTGATGCCATGTGGCAACTGAAGAGAAAACTGTAGGGAGTAGAACGAAGGCATTAAGTCAGGTGCATATCATCCATCCACTCATTAGCAGTGGCTTCGTTATAGTGGTAAGTATGCTTTGACGGATGTCCTGCCACGGTATGTTCGATGTATTTACAAAGCAGTGCCTGTTCTATTGTAGCTCTGAGAAGCCTGCTTTAAGATGACTAACACAGAAACAACATCCACACTTCTCATTTAACATACTAGTAGAAATTGGTGAAACTGAACCTGCGCAaacggatgcacacacacaccagtggttgTTCACCCCGATAGGATAGGCTCGTGTCAGACCCAGAATGCAACAGGATTCTACAATGAAAATTCATTACTGCATCTTCTCCATGGCCTGGCTGTGGTCTGAGGTGATGACAAAATAAACAGAAAATATCTAGGCAATACTTCATTCACAAACAAACAGCAgtcatgggcacacacacacacaacaaatggAAAAacaaaagcaacaacaaaaataaccCTGTATAAAATAGAAGCTTCatttaaataattaaataatgTGCATAAAACAGATTTCAGAGCTAGGTGACTGCTGACCTCACTTTTCAGCACAAGGCAAACTTTATTTGTTTctacctgcatcccaaatggcacccttctctatatagtgcactactttagaccagagcccagtcAAAGCTAATACACTGCATAGGGAGTCATCTGGGGAGCAATTCGTTAAAAAAATCCACACATCATTACCCCCgatcctccacccctacctcacCCTTCTTCCATTGTAAACTTCTATAGTATGGAGTCAGTACCTTATTAATGTGCTGTTcagtgacgtgtgggcccaagtTGGGACCTCGTCCTCTTCAGTGTATGACTTTCACCCCAGTACTCAGAGCAGAGCAGtcaagagaaacagacagcagtGCCATATCCTTGACTTGGCCTGTTCAACTCCGTCGTATTCATTGATGCAAACCGTAGCAAAAGGTTTTAAAAGGTTTGCAATGGAACACATCTATCAGTCAATTTTCTTCAGTTTGGTGCCAAATGAATACGACCCTGGGGTCATGGAAGACTAACCAGTCAGTCACTCTCATTAGTCTAGAAATCAGTCTACCTCTCCCCCACAGTGGTaccccctcccctcaCCCTTCAGCGCTCTTGGACATCAGAAGTAGACCCAGGGTGAAAACCCCGGCAGCCAGCAGCCTCTTGAGCAGGGCGGCCCCGTCCTTGGGGATGGCCACCTGGGCCAGGTCGTTGGTGATCAGGGAGATCTCATGggccacacacacaaagatgaaGGTGCTGATGATGATGTTGAGCGAGGGGTTGCCTGGGATCAGCACCAGGATGCCCTTGGTGTCCGCCGCCAGCCAGATGTGGTACTGGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2632779 lncRNA upstream 88186 16548129 ~ 16548353 (+) True G2301467
TU2632770 lncRNA upstream 95503 16533287 ~ 16541036 (+) True G2301458
TU2632760 lncRNA upstream 119525 16512985 ~ 16517014 (+) True G2301449
TU2632759 lncRNA upstream 124760 16510368 ~ 16511779 (+) True G2301448
TU2632755 lncRNA upstream 130843 16505467 ~ 16505696 (+) True G2301444
TU2632864 lncRNA downstream 20386 16660027 ~ 16660338 (+) True G2301536
TU2632845 lncRNA downstream 29966 16669607 ~ 16686597 (+) False G2301522
TU2632846 lncRNA downstream 29966 16669607 ~ 16693934 (+) False G2301522
TU2632849 lncRNA downstream 29966 16669607 ~ 16686597 (+) False G2301522
TU2632843 lncRNA downstream 50644 16690285 ~ 16693934 (+) True G2301522
XM_021559967.2 mRNA upstream 148584 16463563 ~ 16487955 (+) False LOC110488016
XM_036970995.1 mRNA upstream 148584 16463583 ~ 16487955 (+) True LOC110488016
XR_005041306.1 mRNA upstream 150623 16463583 ~ 16485916 (+) False LOC110488016
XM_036970996.1 mRNA upstream 155933 16463583 ~ 16480606 (+) False LOC110488016
XM_036971473.1 mRNA upstream 285496 16228573 ~ 16351043 (+) True LOC110488013
XM_021559974.2 mRNA downstream 145692 16785333 ~ 16786839 (+) False LOC110488019
XM_021559977.2 mRNA downstream 191067 16830708 ~ 16834652 (+) False LOC110488022
XM_021559976.2 mRNA downstream 191069 16830710 ~ 16834652 (+) False LOC110488022
XM_036971174.1 mRNA downstream 207093 16846734 ~ 16955570 (+) False calcr
XM_036971175.1 mRNA downstream 255488 16895129 ~ 16955570 (+) False calcr
TU2632763 other upstream 111145 16524510 ~ 16525394 (+) True G2301452
TU2631753 other upstream 383942 16203473 ~ 16252597 (+) True dss1
TU2631752 other upstream 423649 16203473 ~ 16212890 (+) False dss1
TU2631539 other upstream 754378 15880681 ~ 15882161 (+) True G2300406
TU2631280 other upstream 1219032 15417226 ~ 15417507 (+) True G2300167
TU2632840 other downstream 29966 16669607 ~ 16676671 (+) False G2301522
TU2632885 other downstream 145727 16785368 ~ 16788539 (+) False LOC110488019
TU2632933 other downstream 187424 16827065 ~ 16834385 (+) True LOC110488022
TU2633200 other downstream 546924 17186565 ~ 17193117 (+) True G2301841
TU2635466 other downstream 2137704 18777345 ~ 18783027 (+) True G2303854

Expression Profile