RNA id: TU2632886


Basic Information

Item Value
RNA id TU2632886
length 2472
lncRNA type sense_over
GC content 0.43
exon number 4
gene id LOC110488019
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16785333 ~ 16788539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGCGTTTCCGATCTTGTTGAATTAGTGTTAGCCTGCCAGCTACCAACAAAAATAGCTACTGCTGCTCGGATAAAATCTCTGACATTAGCTATCACCTTAAAGATAGGACATCTCTGATAGAATAAATCAAAATGAGACGCGCAGGTTTGGGCGAAGGAGGACCTGGAAATTATGTGGCCAGCGGGTACAGCGCGTATGAAGAGGAAAATGAACACTTACAAGAGGGTCTGAGAGCCAAAGTCAGCGCCTTGAAACATCTGTCAATAGATATTGGAACCGAAGTGAAGTACCAGAACAAAATTTTGGATGATATGGTGGTTTGCTGGGGGCCACCATAGGGAGAGTGAAGCAGCTTTCCAGAGGAAGCCAGACCAAGCTCCTGTGCTACATGCTGCTCTTCTGCCTCTTCGTCTTTACCCTCCTCTACTGGTTTATCAAACTGAGGTGATGCATTACAGGAGGCCCCGGCTTTTCCCTCCCTGCCTCCGCCATTGGATCAGAAGACCAGGATGATGATAAACAAATGTTAAAATCAAATGGTCACGCGCcaaatacaagtgtagactttaccatcaaatgcttacttaggagcccttaaccaacagtgtgaCAATGACAATAGGGGGTAATAATGCATGGCTGTTATTCATTTTAGACAGCCCTGATGGAATTAATAGACACTGCCATAAGTTCACAATTGTAACAATGCCCATTAACAATGAGATATTCTAGGTTAATTTTGTAACTGAGTGATCTAGTAAGGCTAAGCAGTaacatacagtgtattcggaaagtattcagaccccttgaatttttccacattttgttacattacagcatcCTAAAattgaaaaacaatttaatccatctAAACACtatcccatgatgacaaagcaaaaacaggtttagacatttttgcaaattcaacaaaaacaaatggatcacatttacataaatattcagacccattactcagtactttgttgaagcacctttggcagcgattacagcctcgccTCTTCCTTGGTATGACTGTATTTggggcacacctgtatttggggagtttctcacattcttctctgcagatcctctcaatctgtcaggttgaatggggagagttgctgcacagctattttcaggtctccagaaatattagatcaggttcaagtttggcctctggctaggccactcaaggacattcagagacttagggtcgttgtcctgttggaaggtgaaccttcgccccagtctgagatcctgagcaggttttcatcaaggttctctgttctgttcatcttaccctcaaccctgactagtctcccagtccctgctgctgccagggttttctccagatgtgacgcttgacattcagaccaaacagttcaatcttgtttcatggtcctttaggtgcttttgtgggctgtcttgtgccttttactgagttgtggctttcgtctggccactctaccataaaaggacTGATccgtggagtgctgcagagatggtggttcttctggaaggttctcccatctccacagagtaactctggagctctgtcagttcttcatcacctccctgaccaagtccccaattgctcagtttgaccgggctgccagctctaagaagagtcttggtggttcgaacttcttccatttaagaatgatggaggccattgtgttcttggacattcaatgctgcagacatttttttggtaccattcccagGATCTGTGCCTTGAAACAATCTCGGAGCTGTAAGGACAATTCCtccgacctcatggcttgctttttgctctgacatgcactgtcaactgtgggaccttatatagacaagtgtgtgcctttccagaatcatgtccaatcaatttaatttaccacaggtggaccacaatcaagttgtggaaacatctcaatgatcaatggaaacaggatgcacctgagctcaattttgagcctCATAGCAGAAGGTCTGAATTAATAAGATATAGCAAAAATGTCAAatctattttcactttgtcattatgggtattgtgtatagattgatgagggtggGGGGAGAAAATTTAAGGctattaaggctgtaacataacaatgtgggaaaagtcgagggttctgaatacattccgaatgcactgtatatacaaatgcGACTAAGCTCTCTAGGCTGAGTCACTGAGGAGCTCTCCAGTGCATGATTCATAATGCTATTTGTATGCAAGTGTGATAGATGTCATGATCTTGAAGAGATTGCTTGATCCAGTGTGACACTGACATGTGATCAATAGTGTTCAACTGTAGAGTTCCACTATAAACACACACCTTGTTTATTTGTTTTGAGGAATAAATTATAAGGCTACACTCTCACTTCAAAACATTTCCTATCCATTCTACAGTGACCGTTCATCTCCACCACGACACACTGTTCTCCCGTGAACAACTttaatgtaaatgtgttttatatGTAAATAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2632846 lncRNA upstream 91434 16669607 ~ 16693934 (+) False G2301522
TU2632843 lncRNA upstream 91434 16690285 ~ 16693934 (+) True G2301522
TU2632845 lncRNA upstream 98771 16669607 ~ 16686597 (+) False G2301522
TU2632849 lncRNA upstream 98771 16669607 ~ 16686597 (+) False G2301522
TU2632864 lncRNA upstream 125030 16660027 ~ 16660338 (+) True G2301536
TU2632925 lncRNA downstream 9204 16797743 ~ 16798178 (+) True G2301596
TU2632926 lncRNA downstream 10224 16798763 ~ 16799279 (+) True G2301597
TU2632927 lncRNA downstream 10824 16799363 ~ 16802406 (+) True G2301598
TU2632928 lncRNA downstream 14072 16802611 ~ 16802958 (+) True G2301599
TU2632929 lncRNA downstream 14742 16803281 ~ 16803573 (+) True G2301600
XM_021559969.2 mRNA upstream 148479 16603599 ~ 16636889 (+) False LOC110488017
XM_021559970.2 mRNA upstream 148479 16603599 ~ 16636889 (+) False LOC110488017
XM_021559972.2 mRNA upstream 148479 16603599 ~ 16636889 (+) False LOC110488017
XM_021559971.2 mRNA upstream 148479 16603600 ~ 16636889 (+) False LOC110488017
XM_036970995.1 mRNA upstream 297413 16463583 ~ 16487955 (+) True LOC110488016
XM_021559977.2 mRNA downstream 42169 16830708 ~ 16834652 (+) False LOC110488022
XM_021559976.2 mRNA downstream 42171 16830710 ~ 16834652 (+) False LOC110488022
XM_036971174.1 mRNA downstream 58195 16846734 ~ 16955570 (+) False calcr
XM_036971175.1 mRNA downstream 106590 16895129 ~ 16955570 (+) False calcr
XM_036971023.1 mRNA downstream 505804 17294343 ~ 17360159 (+) False LOC110488025
TU2632840 other upstream 108697 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 145727 16636539 ~ 16639641 (+) True LOC110488017
TU2632763 other upstream 259974 16524510 ~ 16525394 (+) True G2301452
TU2631753 other upstream 532771 16203473 ~ 16252597 (+) True dss1
TU2631752 other upstream 572478 16203473 ~ 16212890 (+) False dss1
TU2632933 other downstream 38526 16827065 ~ 16834385 (+) True LOC110488022
TU2633200 other downstream 398026 17186565 ~ 17193117 (+) True G2301841
TU2635466 other downstream 1988806 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 2212803 19001342 ~ 19015593 (+) False LOC110488049
TU2636184 other downstream 2565672 19354211 ~ 19359789 (+) True dgat1a

Expression Profile