RNA id: XM_036971175.1


Basic Information

Item Value
RNA id XM_036971175.1
length 5667
RNA type mRNA
GC content 0.43
exon number 15
gene id calcr
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16846734 ~ 16955570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcacaccacaacCCGGGACAGAAAAACTTGAATATCCCCAGAACAGTCAATATGGGAACCACTGTTGCAGTATATTAGTATTCAAGAGTAAAGAACGTTGTGCTGTTCTCAACCCTCAAGGCTGCCTAATCGTGATTCAGGACAACAACCTGGTTCTGTTTGTTAATCCAATTTTCCGCTAGAATGTTTttcttcccttctcttctctgtctccacaGACTTGGCTGGGACCAGACAGTATGGGGTTAAAAAGCTCCTACTGGCTTTTGATATCTTTCATGGTGAGCGGAACTGTTGCCGGGGAGTCCAGCTCTGAGCCTGCTGGCCCAGACACATCTCTCAGGCCTGTCCTGGCCATAATAGAGGACGAGAGGCAGACCATGACCGAGGGTCAATACAAATGTCTTGAACTGTTCAGCCGAGACCAGCAGCACAACATCACAGGTGTGTTCTGTAGTCGTATGTGGGATGGCTTGTTATGTTGGGACGAGACTCCGGTGGGGACCTACGCCACACAGAACTGCCCAGACTACCCTGGCCTGGACACCACTGgAAAAGTGTCAAAATATTGTGATGAATCTGGTAATTGGGTTCAAAGTCCCTCCATTAATAAGACCTGGTCCAAATGTTTGACGTTCTCCAAGGAAAAGTTAAAGAAGGTGACTCCCCATGGTCTGCTAGAGCCAGGGTCTGTGGAGCCCACTGTGGAGACTCCAGACAGCCAGAAGGTGACTCCTCATGGTCTGCTAGAGCCCACTGTGGAGACTCCAGTCAGCCCCAGGGTCagtcaggaggaggaggagaggaagaagatcATCGACGGTCAATACAAATGCTTTGAGAAGATGAACAGAGATCAGCCGTATAACAAATCAGGGCTGTACTGTAACCGGACCTGGGATGGCTGGCTGTGCTGGGATGATACACCTGCTGGGACAGTCACCTGGCAGAACTGCCCCAACTATTTCCCTGACTTCGACTCCACAGAAAAAGCTACAAAGATCTGTAGCGAATCAGGACAGTGGTTCCGCCACCCAGACACCAATAGGACGTGGTCCAACTACACTCTGTGTAACTTCCACACTACAGGCAAGCTGAAGATGGCCTATATCCTGTACTACATGGCGATTGTGGGTCATGCCTTATCCATAGCCTCCCTCCTGATCTCTCTGGCCATATTCTTCTACTTCAGGAACCTGAGCTGCCAAAGGATCACGCTTCATAAGAACCTCTTCGTTTCCTATGTCCTCAACTCCGCCCTAACTCTCATCTACCTCATAGCAGTGGTCAACAACCCAGATGTAGTGGGAAGAAATCCAGTTGGCTGTAAGGTGTTACACTTCTTCCACATGTACATGTTGGGCTGTAACTACTTCTGGATGCTGTGTGAGGGGATCTATCTGCACACGCTCATTGTGGTGGCTGTGTTCGCCGAGGAGCAGCATCTACACTGGTACTACCTCCTAGGCTGGGGGTTTCCCTTAGTGCCTGCATCCATTCACGCTGTAGCGAGGAAGAAGTATTTTGATGACAACTGCTGGATGAGTGTTGAGACCCACCTGCTCTACGTGGTCCACGGTCCCATCATGGCAGCGCTGCTCGTAAATCTGTTCTTCTTGCTAAACATCGTGAGGGTGCTGGTTACTAAGCTGAGGGACACCCACCGGGCAGAGTCTaacatgtacatgaaggcagtGAGAGCTACCCTGATCCTGGTCCCTCTCCTGGGCATCCAGTTTGTCATCTTCCCATGGAGGCCAGAGAACCGCCTGGCGGGGGAGGTCTACGACTACATCATGCATATATTAATGCATTACCAGGGGTTACTAGTGGCAACGATATTTTGCTTTTTCAATGGCGAGGTGCAGGCGGCTCTGAAGCGACAATGGATTCAGTACAAGGCCCAGTGGGGTCAGAGACGGAGGGACCACTGCTCCATGCGCTCTACCTCCTACACCGCCACATCAATCACTGAGGTGCCCGCCTTCATGTACCACCATGACTGCAACAGTGAACACTTAAACGGCAGACACACCTCTGAGGACTCTGAGCTGGTGGCTCTTAAGACAGGGGAGACGTACGCCTGAAAAGCGGAAGGCAGTCTGAGTGTCGGAGGAGAGAAGAATTAGTAGAGGAACCAAGATGGAGACATTTCTCTAATATCCCGCCGCAGTTCCACATTTCATAGATAGAACTGGTGGGTTCAGCCCCAGACTGTGAAGGAGAAGACCGTGTGTCTCTGGACAGTGATATCTCTCCCATAAATTGGCCAATGATGGCTGATgcttcatttacatgacattgCTGCTGCTCTGGCTGCTTATTAAAAACACtaagatatacagtacatgaaaCGGGAGCCGCGTTTGAAATGTAGCGCGTCCTAAAGCTGCTATCTGTGGGACTCTTAACACATCATGGGAATGTTAAGGatgattataatgatgatgaagaAGATGATAATTAGAATGACTATGATGATTATTAgaatgatgatgaagatgatgatgataatgatgaaacTATTGTTGCTTTGCCTATACCAAAGGGTGTGTGGGGTGGGCTGCCAGTATGAGAGGCATGCTCTGTGTGAACTGAATCCATCACTGAAGAGTTCCCCTGAAGGTCACATACTGACGGACAGcacagtgcatgtgtgtgtgtgtgtgtgtgtgtccatggcgACACAAGAGGTCAATGGTTTAAAAGGCTCCCTGTGCCTAAGTTCTGGAATCCTGTAAATAATGGTTCACCACTTTCACTTTAAAAGTGTCAAAGTGTGTTTTAGAGGATTTTATTTTTATgactaaatgttttttttcttgccAACAACTTGCTCTTTAAATACTTTCTGTCTGTTTCGTGAAGCTAGCGAGCTCCTCCAGACTGCTTACAGCTGCTGACTGTGCTTGCTGTGTGTTTCTGTCACAAGGCCTGTATTTAAAGAGTGCAGAAGATACAGAATGTCTTGAAATGGACTCAAGAGAGAAAGAATAAAAAGGATTGGTTAACTTAgactaaaaataaaaacagactgAATCGCATAGGTAACATGTTTAGCAGACACATTTTTGAGTACCACCTGGCTCTTGAGAATATTTTCTGTGAAGTCTGTTTGACGTGTCCATTTGCCAAAAGGTCTAATGTGAAGCTTCTAGGATTCCACAATAAGCGTTATTTTATGTTTTGTGCTTAAATGAAAGCCATTCCAATATGGTGAAATGATTTTCTCTATGTCATATCAGTTAtgaatagagagggaggagagaagaaaaaacaGTATGGTTACCTGCAAAAATAATCATATAAACAATAACAATATACCATTTTTAAAAGAAAAGTCTTGACAATCTAGGCCTATGGAAGATGTTTCAAGGTAAAAACCCTCGTTTCCCCAGGCAATTATCTATATCGAAAACATAATTACCTTGAAATAGCATCCTTCTAGTGCACAGAATCTGTCAAATGTTAAGAAAATCATTCTAATTGAGGGCTATTTGAAAGATTCTGTTGTCATTTCTCTTGTGTGAATACTACAGTGTATTTTCTTTCATTGTTTATTATCACACACCTACTATATTATGCCCTTAGATTATTATGCCCTTAGATTATTATGCCCTTAGATTATTATGCCCTTAGATTATTATGCCCTTAGATTATTATGCCCTTAGATTATTATGCCCTTAGATTATTATGCCCTTAGATTATTATGCCCTTAGATTATTATGCCCTTAGATTATTATGCCCTTAGATTATTATGCCCTTAGATTATTATGCCCTTAGATCCTAAATGAAATCTCCACCTATTCTCAAATGTATTCCTTTGTAGGTTGCGCAACCTTAACAGATTCCTAAATTAGACACATGGAAAACCAATCTAAACCATTGAAATACTGTTTTGTATTGAGTTAAGATGTGTGTGAGTGTTCGTGTGtgcgcgagcgtgtgtgtgtgtatgtgtgttcatgtTTATCAGTGTGAAAATGGAGCTAGTGATGCATGAGCCATGGGGCCTTCTGATGTTTAAATTATTCCCATTCACATTAATGGTGTTTAAAGATAGACATCTGTTATGATTTATCTCCAGGGGACTTTCAGAAACTAAGAACAGCTCTGATCTGGATATAGTGGACACTTAGGAAAAAAGAGTTCCATTaagggttcttctgctgtccccatagaaccctttttggttccatgtagagaCCTTtgtagaacccaaaagggttatacctggaaccaaaacgtTTTTTTCAAcaggttctcttatggggacagccaaaaaaACCTTTTAGGTTCAAGATAGCACATTTATTTCTAAGAGTATAGCACTATGCTAGATAGATACCAAGACTTTAGTAGGGTACCGAGGACAGCCGAGGGGACTCATTTTTTTTAACCTATATTTAATCCTAATTTGTGCATACAATGAAATTCACAATGTGATTTATACATCTCAAACAATTTAAACATGAGGCCTCAGGtgcccagacccagacccataGCAGACTAGTCTGGATTTGAATGTCGAAGACACATCTTCCTTTGGGGACAATTAAGCTTATCTTACCTTAGACCCTGTCAAACTTATTGTGCCAATGTAATTTATTTTACAGCTTCAATTCCAATTAGGCCAAGATCAAATAAATCTTTACACTTATGCCAATGTTTATACTGAATCCAATGTCTTTGCTGTTGTTGGGCCATCatggaagagatggagaaaatCAGTTTGAAATGGGAGAAGGCCATTAGATGAGGTCTCAataggctctattcaatctggatTGAGGAAGTTCGGCGTTACAGAGCGATTGAAATGTAAAGGAAATGTTtcctcaatcggaaattacctttacatttctagcGCGCATTCTGTAAGGCTTCAGCAATCCAGATTAAATAGAGCCCTAAGAGCTCATTCTGTAAGGCTTCAGCGATCCAGATTAAATAGAGCCCTAAGAGCTCATTCTGTAAGGCTTCAGCGATCCAGATTAAATAGAGCCCTAAGAGCTCATTCTGTAAGGCTTCAGCGATCCAGATTAAATAGAGCCCTAAGAGCTCATTCTATAAAGCTTCAGCGATCCAGATTAAATAGAGCCCTAAGAGCTCATTCTGTAAGGCTTCAGCGATCCAGATTAAATAGAGCCCTAAGAGCTCATTCTGTAAATCAGAGAAGGCGTTAACCACTGTGAAATCTTATAGATGATTTAGAAAGGTTTTGATCCATCCATATTTTAAGGTTGATTTGTTCTGGATATGAACACAATGTTAAAAGTAGTTTTTTTCTTCATTTGGAGGATGATGAATATTTCTGTATATTTAGTATGTTCATGGCTATGTTGTCCAGTGCCCATGTCAACATGACCGCAAAGTTTGTGTGTGTAATAGATGTGAAATGTTTTGACCACTGTTTTTGGTTCTTTTGTTTTTCTTGTGTTTGGCTCTCGACCTCTAAGCTCTTTGTGTGGCGTTACTtcaaacaagagaaaaactgtttttttaatgCACAAATCGACCAGCTTTTTGTTTGAAAGCTATTGCAATCAGAAATATATTGGAAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2632936 lncRNA upstream 58985 16835478 ~ 16836144 (+) True G2301606
TU2632960 lncRNA upstream 68342 16826444 ~ 16826787 (+) True G2301630
TU2632957 lncRNA upstream 70867 16824027 ~ 16824262 (+) True G2301627
TU2632955 lncRNA upstream 72225 16822650 ~ 16822904 (+) True G2301625
TU2632953 lncRNA upstream 74668 16820224 ~ 16820461 (+) True G2301623
TU2633064 lncRNA downstream 18863 16974433 ~ 16979513 (+) True G2301716
TU2633076 lncRNA downstream 42731 16998301 ~ 17014938 (+) True G2301726
TU2633108 lncRNA downstream 88343 17043913 ~ 17044839 (+) True G2301758
TU2633115 lncRNA downstream 94439 17050009 ~ 17051608 (+) True G2301764
TU2633124 lncRNA downstream 105520 17061090 ~ 17063174 (+) True G2301773
XM_021559977.2 mRNA upstream 60477 16830708 ~ 16834652 (+) False LOC110488022
XM_021559976.2 mRNA upstream 60477 16830710 ~ 16834652 (+) False LOC110488022
XM_021559974.2 mRNA upstream 108290 16785333 ~ 16786839 (+) False LOC110488019
XM_021559972.2 mRNA upstream 258240 16603599 ~ 16636889 (+) False LOC110488017
XM_036971023.1 mRNA downstream 338773 17294343 ~ 17360159 (+) False LOC110488025
XM_021559983.2 mRNA downstream 413198 17368768 ~ 17374337 (+) False fam133b
XM_021559982.2 mRNA downstream 413199 17368769 ~ 17374337 (+) True fam133b
XM_021559987.2 mRNA downstream 424599 17380169 ~ 17388113 (+) False LOC110488030
XM_021559986.2 mRNA downstream 424604 17380174 ~ 17388113 (+) False LOC110488030
TU2632933 other upstream 60744 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 106590 16785368 ~ 16788539 (+) False LOC110488019
TU2632840 other upstream 218458 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 255488 16636539 ~ 16639641 (+) True LOC110488017
TU2632763 other upstream 369735 16524510 ~ 16525394 (+) True G2301452
TU2633200 other downstream 230995 17186565 ~ 17193117 (+) True G2301841
TU2635466 other downstream 1821775 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 2045772 19001342 ~ 19015593 (+) False LOC110488049
TU2636184 other downstream 2398641 19354211 ~ 19359789 (+) True dgat1a
TU2636452 other downstream 2872647 19828217 ~ 19829961 (+) True G2304678

Expression Profile