RNA id: XM_021559982.2


Basic Information

Item Value
RNA id XM_021559982.2
length 1729
RNA type mRNA
GC content 0.44
exon number 11
gene id fam133b
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 17368768 ~ 17374337 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACAGGTCTGTGTGTTCGTCGTAGTCAGAGAATCTAGCTACGTAGCTAGAGAAGCTCGCTTGTTGTGGTGGCTAACGACGGGAAGCATGCTACGGTTCTCAATTTAGTGATATTCGCCCAATAGTAGGCGAAATCTGCAGAAATGGGGAAAAGAGACAATAGAGTGTCATATGTGAACCCCATAGCTGCATCACGGGCCAAGGGACCTGCACCCAACGCAGGACCGTCTATCCAGGATTACCTGAGCAGACCACGGCCAACATGGGAAGAGGTGAAAGAGATCATCGAGAGGAAGAAGAAAGGCTCCAGAGCTCTGGCGGACTTTGAGGATCAAATGAACGAGAATTGGAAGAAAGAGCTGGCGAAGAACAGAGAGAAGTTACTGGGTGGCGTTgacaaggagaaagaggagaaggagaagaaggagaaggagaagagagagaagaaggagaagaaagagAAAaagaagaaagagaaggggaAAAAAGAAAAGGGAAAGAAATCCAACAGGcattcctctccctcctcctcctcatcgaGTTCTGATTCCTCTAGCAGCTCCTCCTCAGACTCTGAAGACGAGAATGAAAAGAAGAGTGTCAAAAAGAAACGTAAAAAGAAGCGGTCCTCCTCCAAGAAAGCATCAGAAGACTCGACTGTAGAATCGGAGCCCGACAGCAAGGGCTCCTTCCCTCTCATTCTGTTTCTCTCCAAGAAGAcgaagatggagatggagatgaagaAGAAAGAAAAGGATGAAAAGAGCCGCAGGAAGAAGAGGAAAGCCGAGCAAAGTCATAAAGACTCATCCTCGGAGTCGTCAGCTGACTCAGAAGTGGAGGAGGGTGGTGAAGccaagaagagaaagagaagtaaTGAGGAGAAAGAAAAAATAGCAGCAGACAAATCAAAGAAGAAGAGGAAAAAGAAGCACAAGAAACATggcaggaagaagaagaagaagacctcTTCTGACGTTGAGTTAGACTAACATCTAGCGCTGTGGTTCTCTGTCCAACTGTCCACCACTAGAGAGCATCTGCCTTTCCACTACCAAAAAAATCCCATCTAGGCTGCTCCCATGATGGGGGTAGTTGATGGATTAGGGGAACCGCTAGCGTTCTGCTCATGAGAGTTGAGATGGTGGGGAGATGGGATATGGGGTTTCTAATGTTAATTAAGGACTGGTGAACTGGGAGTTACGGGTCATCAAACCCTCTGTGACAACTTTGcatatttgtttttcttttgTCTGTTGCTAGTTTTTATTAGATCCAAATGAACGTCGTCAAGGACACCATAAGTCGTCGTCAAGGACACCATAAGTCTGTCAAGTGTGGCCCAACTGAACTGAAACATTTGCATATGAAATGAAAATGAACTTCCATACATGGATATTGATCAGCAGTGTACATTTTTTACACCTTTGGTATGCTGCCCTGCTATGTCTATTTTACCATTCTTGGAGATCTCGTGCATTACTAGCTACACTGAGGTCATTTTGGGACTTTGTTATGCTGGTGCCCAGTGTCATGATGCATGCATTCTGATATGATGGTCACTTCTCTTGCCAGCCTCATATTGAAGTTGGGATTGTGAAAATATGAGTGAAATTGTCATTATCACAAGGGATAAACTGTTCAATTCTGTTAATGTAATGAATTCTACAACTGAATATCTATAAATGAATGGGTTTTAATTATTAAAGTATTGTTTTATCCTTGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2633711 lncRNA upstream 1993 17365053 ~ 17366776 (+) True G2302297
TU2633710 lncRNA upstream 4650 17360005 ~ 17364119 (+) True LOC110488025
TU2633746 lncRNA upstream 38969 17329588 ~ 17329800 (+) True G2302330
TU2633745 lncRNA upstream 39622 17328706 ~ 17329147 (+) True G2302329
TU2633743 lncRNA upstream 41424 17327047 ~ 17327345 (+) True G2302327
TU2633712 lncRNA downstream 75326 17449663 ~ 17454026 (+) True G2302298
TU2633843 lncRNA downstream 161307 17535644 ~ 17537114 (+) True G2302417
TU2633853 lncRNA downstream 196614 17570951 ~ 17572613 (+) True G2302427
TU2633860 lncRNA downstream 201869 17576206 ~ 17576594 (+) True G2302430
TU2633894 lncRNA downstream 295914 17670251 ~ 17671322 (+) True G2302462
XM_036971023.1 mRNA upstream 8610 17294343 ~ 17360159 (+) False LOC110488025
XM_036971174.1 mRNA upstream 413199 16846734 ~ 16955570 (+) False calcr
XM_036971175.1 mRNA upstream 413199 16895129 ~ 16955570 (+) False calcr
XM_021559977.2 mRNA upstream 534117 16830708 ~ 16834652 (+) False LOC110488022
XM_021559987.2 mRNA downstream 5832 17380169 ~ 17388113 (+) False LOC110488030
XM_021559986.2 mRNA downstream 5837 17380174 ~ 17388113 (+) False LOC110488030
XM_021559988.2 mRNA downstream 5837 17380174 ~ 17388113 (+) False LOC110488030
XM_021559990.2 mRNA downstream 5841 17380178 ~ 17388113 (+) False LOC110488030
XM_021559989.2 mRNA downstream 5844 17380181 ~ 17388113 (+) True LOC110488030
TU2633200 other upstream 175652 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 534384 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 580230 16785368 ~ 16788539 (+) False LOC110488019
TU2632840 other upstream 692098 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 729128 16636539 ~ 16639641 (+) True LOC110488017
TU2635466 other downstream 1403008 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 1627005 19001342 ~ 19015593 (+) False LOC110488049
TU2636184 other downstream 1979874 19354211 ~ 19359789 (+) True dgat1a
TU2636452 other downstream 2453880 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 3178996 20553333 ~ 20553684 (+) True G2305956

Expression Profile