RNA id: XM_036971180.1


Basic Information

Item Value
RNA id XM_036971180.1
length 4383
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110488036
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 17763006 ~ 17784596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcactgtgtttctgatcaatttgatgttattttaatggacaatttttttgctttaatttaaaaaacaaggacatttctaagtgaccccaaacttttgaacagtaatatatatacacactattagATATATGGATAAACTGGTAAAATGTCACataacgccacacacacacacaatatataagATCAATTagctacattttttatttattatttatgacAGAAAAGGTGTTACAAGTGGACATCACGTTTTATAAAATTATGAAATATTATTTTTCCCCGCAATGCTATGCTCACgtgtttttaatttatttttatgtttagctcTAACTTCCTGGTGACCAACCAACTACACTTTCTCAGTCAGCAAACCTGAATTTCTGGAATAACAAGCGGTTTTAAAGTAAAACATATTTTCCAGTACGCCTACATTTAGTCAGGTATCTAATTGAGTACACAGCTTGAAGAAGCTTCCATTGAAATCGAGTGAAAACAAGAGCTGGCTACCTAAATTCCAGAACGTAAAAGTGACATCCCCAGCTAGCCAGCGCTCATCAACGTGGAGAGGACGTGGTTGTGCTGACTGACAGCTGTAGTCAGAGCTAGAAGACAGATGCAAACGAGAGAAAATCCTGAGCAGTTTCTAAGAACACGGAATGTAGTGGAATGATAAGAGCTGTGTGGCCTGGGCACTCTTGAGTGGCAGTGGGTGAGACTCCACGTGACTGGTTGCTGGGGGCGATGAGGGTGCGTTGGTCCCGGAAGCTGGGCTTCCTAGCAAAGACCTTCTTCCTGCTGTGGGTGCTATGGCTGGGCTACATTCTCCTAGCCCGCTCCACCGCCTCCTCCATAGGGGCCgatggaggggaggatggagggggccgCAACCTGCTGGTCAGGCACTTCTCCCGTGTGGAGGAGCAGGGAGGTGAGCAGCTGGCCAGGCCCGTGTACGTGAAGGCGCCAGCGGACGCCAACGCGCACGGGGAGTGGGGCCAGGCCACCAGGCTGAACCTCAGCCCGGAGGAGAGGAAGCAGGAAGAGGACAGCGTGGAGAGATACGCTATTAATATCTTTGTTAGTGATAAGATCTCCCTGCACCGACACATCAAGGACAGCAGGATGAAAGAATGCAGAGCTAAGAAGTTTGACTACCGCCATCTGCCGACCACGTCAGTGATCATAGCGTTCTACAACGAGGCCTGGTCCACCCTGCTCAGGACCATCCACAGTGTTCTGGAGAGCACACCCGCTGTCCTCCTGAGGGAGATCATCCTCATAGATGACTTTAGTGACCGAGTCTATCTGAAGTCTCAGCTGGAGCAGTACATCACTAACTGGGAGCGTGTCCGCCTCATCCGCACCAACAAGAGGGAGGGGTTGGTCAGGGCGAGGCTCATCGGCGCCAGCTACGCTACGGGTGACGTACTGACCTTCCTGGACTGTCATTGCGAGTGTGTCCCCGGCTGGATCGAGCCGCTgctggagaggaTTGGTGAGAATGAGAGCACTATCGTGTGTCCGGTGATCGACACCATCGACTGGAACTCGTTTGAGTTCTACATGCAGACAGATGAGCCCATGATCGGAGGCTTCGACTGGAGGCTGACCTTTCAGTGGCACGCTATCCCTGAGGTCGAACGCAAGAAACGCAAGTCCCGCATCGAACCTATCAGgtctcctACCATGGCTGGTGGGCTGTTTGCAGTGAGCAAGGCGTACTTTGAGCACCTGGGCACATATGACATGGGCATGGATGTGTGGGGAGGAGAGAACCTAGAACTGTCCTTTAGGGTGTGGCAGTGTGGAGGTTCTCTGGAGATCCACCCCTGCTCTCACGTGGGACACGTCTTCCCAAAGAAAGCACCCTATGCCAGGCCCAAGTTCCTCCAGAACACGGTCCGTGCTGCAGAGGTGTGGATGGACACCTATAAAAAGCATTTCTACAACAGAAACCCCCCGGCCAGAAGGGAGTCCTATGGGGACATCTCAGAGAGGGTGGTCATTCGAGAGAGACTGAAGTGTAACAGCTTTGACTGGTACCTGAACAACGTCTACCCTGACCTGCATGTACCAGAGGACCGGGAGGGCTGGCACGGGGCGTTGCTTAGCTCTGGGATGCATTCAGAGTGCCTGGACTACAACGCTCCGGAACACAATCCCACAGGGGCGCACGTCTCCCTCTTCAGCTGCCATGGGCAGGGCGGCAACCAGTACTTTGAGTATACGACCGATAAGGAGATCCGCTATAACTCTGTGACGGAGCTGTGTGCCGAGGTCCCCGAGGGACAGATTTACATTGGGATGACACACTGCCCCAACGACAGAACCCCTACACCCCCCACCATCATCTGGGAGTTCAGGGAGGACGGGACGCTCTACCACCCTCACTCAGGCATGTGTATCACCTCCTACCGCACAGCCGAGGGGCGCACAGACGTCCAGATGAGAATCTGCACGCCCGGGGACAAGCAACAGCACTGGAAGTTTGAGAATGGGAGGGACTAACCTCACCCTAAGTGACcttttggagggagggagagagagactctgcACACTACTGAATACTTGACAAATGTCCTAATTTAAAGTGCCTTTGCAAACCAAATGGGTGGTAGATGGGCTCCACACCTGAGGTGACAATATTTCTCTCTGTCGGAATTCCTCTTTTACAGTTGACCTCTCACTGTGAGGGCTGAACAACAATAAGAAAGCTTGAACGTGTGGTGTCAGTTCTAAAATACTGGTTTGAAAGAGGAACAATGTCATGGGAATTCAGTGGGATAAGCATAGATGCTAACAAATACTCTTGCGTTGAACAATGTTTTTTAAATCCTATTTTTGTTGTGTGGTTTACCTGTAAAAAAACAAGTCATCTAAGGGTGTTTCTGGGGTTTGAAATGAAAAAGTAAAATGTTTACTAAACAAATATGATTCATTTAGGGGTCTAAAGGATGAGTCTTTCCTAGGTGTTGTTAATCTGGGGTTTGTTACTCCGATATAACACTTTGAGATAGCTAAATAAGTCCAAACGCTTGGTGTCATATGAGACTTTACAAGCCCCATCTTGTGTGAGTGAATGAAGTGGACTCTGACACTAGTAGGCTACATGCGTTCTACTCATCAGCTTCTGACTCTGTTTGAAGACTGTGTTCAAGGTAGGATCAGATTGGGCTGTTCAAACAAGACTTGAAACACTTAAGCATGCGCTATGTACAATTTCACCATTGCCTGAGGTTGGTGGGACATTTGACATGGTTGTTTGGTAGTCTTCACTGTGCTGTGCAAAAACATTCTTTACACAGGCTGATTTACTGTGTCTACCATGTGCCTAAAAAAACAGAACAGTTGTATTTTCTGAGGAGTTTTTTTAACGTGTTTTAATCTAAAATCTACTGTGCCTAacaaaagcaaaaacatgttcATTTCACTTTCATAGTAGCAATATTCTCATATGGGTGTTTGTCTGCAGCAATATTGTCTGCTCTCTTGCGTAGCCTCACCATTTCAGCTAGCACATGTCATGGCATTGCTTACTGTAGCATTCATCAATTGTTGATCTCTCAAGGGCTTGATTCTCTTAaatgcccagtgcagtcaaaattcgtttttttcctgtgttttgtatcatattgtacaactgCTGATGAAACGAACACTGTAAAAGCTAGAACATTTGATCAGTGTTGGTTCCTGATAGTTGCTGATTGAAAATAAATTTACACAGGACTTTCTAAACAGCAGGTCTTGCATGGATGGAGTTTTTTgactgcctggtgacatcaccaggtggtaaattagttaatagatcaaTAACAATGAGTTCCAAACCTCTTTCCCTTCCCCAGACTTACATCAATGCAGCCTTTGTATCAGTACTTGAAACTTCAACAGCACCAGCACTCTGCTCAATCCACTAAACCTAAActtttcctaaaataacttttctgGTTCACTTGATTGGGATTCTACAACCAATGGAGATTAATAATTGTGTGTGTTGCCATTGAAGTGCTTATTGAAATCAGCTATACTGCCGAAGACTGCTCTTCCTAATGCAGTCTTTTTTTGTGGTGCTTTGCACGAGGGCCTTTTTTAAATCAAATATTTGTACTGAATGGTTGATCTTTCAAAGCTTTTATATGATTCTATGAATTCTTTTTTATTTCCTTTGTAAATGATACTTTTTGGTATAAAGGGACCTGGATGGGGCTTATTTGAACTACTGTACCGATTTAATAAGCATAAGAGACGGTGGGGATTGTTTGTACCGGCGAAGCATGAAAGGGTTCAAATGAAGTTGGAGTTTTGGAAGATTGCTGTAGATCAATTAATGCCTTTTTAACTCACTGACCAATGACTATTAAAATCAAGAATCCAAAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2633903 lncRNA upstream 44333 17717494 ~ 17719228 (+) False G2302470
TU2633902 lncRNA upstream 44333 17717603 ~ 17719228 (+) True G2302470
TU2633963 lncRNA upstream 61164 17702000 ~ 17702397 (+) True G2302526
TU2633957 lncRNA upstream 63017 17700322 ~ 17700544 (+) True G2302521
TU2633956 lncRNA upstream 63774 17696816 ~ 17699787 (+) True G2302520
TU2634072 lncRNA downstream 92361 17876957 ~ 17880270 (+) True G2302616
TU2634099 lncRNA downstream 135138 17919734 ~ 17920809 (+) False G2302641
TU2634102 lncRNA downstream 135138 17919734 ~ 17920809 (+) False G2302641
TU2634105 lncRNA downstream 135138 17919734 ~ 17920809 (+) False G2302641
TU2634107 lncRNA downstream 135138 17919734 ~ 17920809 (+) True G2302641
XM_021559992.2 mRNA upstream 50340 17704489 ~ 17713221 (+) True clcc1
XM_036970970.1 mRNA upstream 342049 17393355 ~ 17421512 (+) True pex1
XR_005041296.1 mRNA upstream 342567 17393354 ~ 17420994 (+) False pex1
XM_021559990.2 mRNA upstream 375448 17380178 ~ 17388113 (+) False LOC110488030
XM_036971579.1 mRNA downstream 3181 17787777 ~ 17812354 (+) True LOC110488037
XM_036970730.1 mRNA downstream 77833 17862429 ~ 18232900 (+) True LOC110489398
XM_036970839.1 mRNA downstream 539921 18324517 ~ 18449153 (+) False ctnnal1
XM_036970840.1 mRNA downstream 539921 18324517 ~ 18449153 (+) False ctnnal1
XM_036970842.1 mRNA downstream 539921 18324517 ~ 18449153 (+) False ctnnal1
TU2633200 other upstream 570444 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 929176 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 975022 16785368 ~ 16788539 (+) False LOC110488019
TU2632840 other upstream 1086890 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 1123920 16636539 ~ 16639641 (+) True LOC110488017
TU2635466 other downstream 992749 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 1216746 19001342 ~ 19015593 (+) False LOC110488049
TU2636184 other downstream 1569615 19354211 ~ 19359789 (+) True dgat1a
TU2636452 other downstream 2043621 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 2768737 20553333 ~ 20553684 (+) True G2305956

Expression Profile