RNA id: XM_036970730.1


Basic Information

Item Value
RNA id XM_036970730.1
length 5816
RNA type mRNA
GC content 0.49
exon number 19
gene id LOC110489398
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 17862429 ~ 18232900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAACAGACACTCAGGCAGCCGCAGCATCGTCCGCAGCGagcgcacacacactgacacaagtCGCGTGGGCTGTCTGGACGCCGACGCCATCTGTTCTCGCCCACGATGGACACGCTGCAATCAAGACTGCTTTTAAGATTATCTATTTAGGAAATTTTAACCAGAATTACCATATTCTCTTCGCCCTGAATAGACTACATATTGTAGTGCGTTGGCACGGATGCTCTATTAGGCTACTCTGCTGTCTCTTGGCTGGGGAAAATACTCAGGAGGTACATTTGTATCCATAACATTTGTCACCGAGAGTGGCTGACTGGTCGTCCTCTGTCATCTTGAAGTTGTCTTATTGAGCATCCTACAGACTGTGAATTGTGATGTACTTGTGCCATGGTTACCCTAGTTCCACAAGGTGAGGAGAGGGATTGAGTTGGAGAGATTTTTAACGCGGAGGGAGTTGTGGATCACGGAgaccaggaggagagagacaaccgTCAGCGCCAATAACACCTTCTGCATCAGAACCGTCTCGGTTTCTTCCATATATGGTACACCACTAAAACTGGACCATTGGATTAATTTTACAGAGTACCTGTCAACGAGAATATATTTGTTTTAAATTCACTGTAATAGACTTCAATCAGGTCGAAGTGTCTCATTGCGGTTGAACCCCATACCAAGGCTAAGGTTGTGGTTTTACCGTTTGGACcattttaataataatatttccCTCTCGGGTGGATTGTTTGACCATCTCGGACGACCCCAAATGTGCGATGTCTGAGCAGTGAGAGCTCGGTGGGATCTGCTTTGGTCGTCCTGCACAGTAGCATGGCCCCGTCCCGACGGCACTGCGGATGGGAGATGACGCCTCTGTCGGTATGCCTGCTCCTGTCCATCTTGATGTTTCAGCCTGCGCTAGCCAAGGTCTGCAATGACTATACGAGGCACGGTCAGGACAACAGCTGGTTCTCGGGGGATAATGAAAAGTTGCCCATCATGGTGCTCATGCCGATGAACGAGTCGGCGCTGATGAGCAGCATTAGTCAGGGCATCGAGCCCGCAGTCCAACTGGCCATACAACATATAAAAGAATCACGGAATTACAAGTTTTCACTCATCACCAAAATCTACGACACCGAGTGTGACAACGCCAAGGGATTGAGGGCCTTCTTCGATGCCATATGCTATGGACCCAAACACCTGATGATCTTTGGAGGGGTGTGTCCGTCCGTGACGTCCATCATTGCTGAGTCACTGGAGGGGTGGAACCTGGTGCAGCTCTCCTTTGCGGCAACAACCCCTGTTCTGGCTGACAAGAAGAAGTACCCCAACTTCTTCCGGACGGTTCCGTCGGACAACGCAGTGAACCCAGCCGTGGTCAAGTTCCTCAACTTCTACAACTGGAGCCGTGTGGGGACCCTCACACAGGATGTCCAGAGGTTCTCAGAGgTGAGGAATGACTTGACCAATGAGCTGGAGAAGGCAGACATCCAGATTGCTGACACTGAGAGCTTCTCCAACGACCCCTGTGTCAATGTCAAGAAGCTCAAGGATAATGATGTGAGGATCATTATCGGACAGTTTGATGAGAATCTGGCCTCCAAAGTATTCTGCTGTGCGTACAACCTGAACATGTATGGTAGTAAGTACCAGTGGATCATACCAGGCTGGTACCAGGGGAACTGGTGGGAGCAAGCCAACTCCACCAACTGCACCACCAGGAAGCTGCTGACCGCTATGGAGGGATACATTGCTGTGGACTTTGAACCGCTCAGCGCCAAACAGGTCAAGGGCATCTCTGGAAGGaCACCTAAGGAGTACGAGAGGGAGTACAGTAAAGAGCTGCAGCAGAAGGGGGTGGAGCCCTCGAAGTACCACGGCTTCGCCTACGACGGGATCTGGGTGATAGCGAAGACCCTGACCCGCGTCATGGATTTACTGCAGCACAAGGAGAGGCAGGACATGTACCACAACTTCACCGTGGACGACCGGGAGGTGGGCAGGCTGGTGCTGGACGTCATGAACGAAACCAACTTCTATGGCGTCACGGGCCAAGTCATGTTCAGGAACGGAGAACGGATGGGCACGATCAAATTCACACAGTTTCAAGAGGGTCAGGAGGTGAAGGTCGGAGAGTACAACGCTATTGCTGATGTCCTGGACCTTATTAACAACACCATGAGGTTCCAAGGGGTGGAGCCTCCTAAGGACCGTACGTTTGTGCGTCTGCAGCGCCGCAACATCAACGTACCCCTTTACAGCATCTTGTCTGTTATTACCATCCTGGGCATGCTCATGGCAGGGGCCTTCCTCTTCTTCAACATCAAGAACCGCAACCACAGACTGATCAAGATGTCCAGTCCCTACATGAACAACCTCATCATTCTGGGAGGAATGCTGTCCTActcctccatcttcctctttGGCCTGGATGGCGCCTTGGTGTCCGACAAAGAGTTTGAGGCCCTGTGCACCGTGAGAACGTGGATCCTCATCGTAGGGTATACGACAGCGTTCGGCGCCATGTTCGCCAAGACCTGGAGAGTCCACGCGATCTTCAAGAATGTCAAGATGAAGAAAAAGATTATCAAGGACCAGAAGCTGCTGATCATCGTTGGTGGGATGCTGCTGATTGACCTATGCATCCTCATATGCTGGCAGATTGTTGACCCACTGAAGAGGACCGTAGAGGAGTACAGCTTGGAGGCAGACCCCCAGGGGCAGGACATAGCCATCCGGCCCTTCCTGGAACACTGTGAGAACACACATATGACCATTTGGCTGGGAATTGTCTACGCTTACAAGGGCCTGCTTATGtTGTTTGGCTGTTTCCTGGCCTGGGAGACGAGGAATGTGAGCATCCCGGCCCTGAATGACAGCAAGTACATCGGGATGAGTGTGTACAATGTGGGCATCATGTGTATCATCGGGGCGGCTGTATCCTTCCTCACGCGAGACCAGCCCAATGTGCAGTTCTGCATCGTGGCTCTGGTCATCATCTTCTGCAGCACGATCACTCTCTGTCTGGTGTTTGTGCCAAAGTTCATCACGATGAGGACCAATCCGGATGCTGCTACTCAGAATCGGAGGTTAAAGTTCAATACGAACCAGAAGAAAGAGGACTCCAAGATGTCCACGTCAGTGACGAGTGTGAACCAGGCCAACACGTCCAGACTGGACGGCCTGCAGACCGACAACCACCGCCTCCGCATGAAGATAACAGAGTTGGATAAGGAACTGGAGGAGGTGACCATGCAGCTGCAGGACACCCCAGAGAAGACCCCGTACATCAAGCAGAACCACTACGGCGACGTCAACAACATCCTCAGCATACGCAACTTTACCGACAGCAAAGAGGGGGAGAAATCGATACTGAAGAATCATCTTGAGCAGAAGCCTCAGGCGCAGTGGGGCTCCATGGACCCTTCCAGAATAAACAGAGGTCCTCTGGAGGATATAAACTCACCTGAACACATACAGCGCAGGCTGTCGTTGCAGCTGCCCATCCTGCACCATGCCTACCTACCCTCCATAGGGGGGGTGGACGCCAGCTGtaccagccccaaccccagccccagctccagcccgCGGCACAGACACATCCCACCGTCCTACCGGGTCATGGTCTCAGGCCTGTGAGCATCAGTTTCCCCTGGCGCTACCAAGAAAGACATCcgtgtaaaaaacaacaacaagcagACTGTGACGGAGGTCATCAGCGATAGTGGAATAATATGTGTGTTGGACCAGGGAGGGGGAAGTTTTATCCACTCTTCATGCCTCGGTCTCTAGACCCCCTCACTAGAACCATGGGTCGGGGAAAGGGCACAGAGGACCATACAAACGATGACACGAACCGCagctacaaccccccccccccccccccccccccccccccccccagcagcagaggaccagacctgacctgaccagtagCGTATCTGCTTCGGAAggttttatgttgttgtttttttcctttTGCCATACACTTGACTATGTGTGAACTTGTCAAAACTTGAGTATTTCGCTACTTCAATGCCTAGAAGGTGTTAGGTGTTACTATAGGAACAAAGGAGTTCCAGATCGGACTGATGTAGGATTCATCAAAATTCACCGTTGTGAACAAACATGTAAATATCATACTGACTTTGACTTACCGTAAGCTTTGATTGAGTATGCTGTGAATTAACATATAGGGGGATGGGGGGCAGGTCTGTATCAGCATAGGTCCTGAAAAACTCATATAAAAACTTAAAAACTGGCATCCTACAAAGCAAAATGTAAGACAAATTGGTTTGTGTAATATTACTGCATCATTGTAGTATGTTAATTATGTTAAATGGATTGGCCATTGGCAAGAAGTAAGGCACCAGCGGCCAATTCTTTTAACTTTCACACAGCTTATTTTCCACTTTGCTAAATTTGCACCATTCGTTTTTCTTAAAGATTATACTATCCCGTTTCATAGGTCTTTAATGTGTTTCAACTACCATAGTTTAATTTGTCTCCAAACAAGCATGACATGCTATAGTACAGGTTAATGCCATTCTGGGCTTAGAGGGCAACAGAACCAAACAGAATAGATTTCCAGGAACTAATAGTAATGTGACTCTATGTACAGTACGTACGTGTGTtgacataaacacaaacaaatagTCACCTACACAAACACAGAAAGATACACACCTTTAGGTAAAGTACTCACCGTATCCTAGTGGTGTTAGGTGTCCTGACAAGGCTTTGCCAAAGATCAGTCTGAAGACCAGCAAGCTTCCATTACAACGGGTTGGTCTTCGCCCCACCAGTGTAAATGGTCCAGAAACTGTCATGTCACTCTATGTAGGGAGTGGGGACCACCCAACGCAGCACCCAGAGCTCTGTTACCTCACTGTTGTGAGGCTGAAGGAGAGGCTTTGTAATGACCATATGTTTCATAAGTCAATGAAATAGGTGCATGGTCAGGCAGCATCAAAAGTGGTGCAAAACTGAGATTAAAAACTCGGGAGGAAGTTCTGTTGACAAGAAATATATGCAGATAGTGAAGAGTGACAAGGAAGTGTGTTTGTCAGTTAGGTTCCATTGGTAGTTTCGAAACAGTGAAATTAAGTTTTAAGTTATTTCAATCAGTAAATCTGAATTTCAATGACCAAAATGGCAAGTGGAAGATGCATGCGAGCCGTATGTGAACCCTATCCAGGAGACCCCAGCACTGTCAGTCAACGAAACAATGGCACCACAGACTGGGAGAGAAGCATCTGTATATCGTGGCAGGTCTACTATACAGTGATGTTGTGACAAATCACCTGCCACTTAGCAACAGTGGAACATAACTCATGGttgcttttaaaatgtttttctgtGTAGTCGGCCCAAAGGTAATTTATTGTTGTAAAAAGGGCCGTagacatagctagctaacgttattttATTTGTACAACTgttgtcacaaaaaaaaaaaaaaagtggacaAAATCCATGAATAAGCTACGTATCATCATTAGAAGTCTAAATAGATTTGTTTCAGCATATATTTCACCATTGGTGTCTTGGTTAAAAGACGTTTGTTGAGCACTGTGCCTGTAGTTGTATCCTGTAGCCTGCAGGAGCCACAGTATACAGCAGTTCCAGTAGGTAGTGCTGGTGGTGTGGGCTGGGCAAACTAAACTAAACAAGCATCTGGAACCCATCTGTAAATTGTACAAGCTGTCATGATTTCTCTCATTCAACGCTCCAACACCtgggacatacagtacagtgtgggatAGATAGATAACTTGGGGACAATTCCACTCCAGAGAGTGGGCTGCTCTGTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004965 G protein-coupled GABA receptor activity molecular_function

KEGG:

id description
K04615 GABBR; gamma-aminobutyric acid type B receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2633903 lncRNA upstream 143201 17717494 ~ 17719228 (+) False G2302470
TU2633902 lncRNA upstream 143201 17717603 ~ 17719228 (+) True G2302470
TU2633963 lncRNA upstream 160032 17702000 ~ 17702397 (+) True G2302526
TU2633957 lncRNA upstream 161885 17700322 ~ 17700544 (+) True G2302521
TU2633956 lncRNA upstream 162642 17696816 ~ 17699787 (+) True G2302520
TU2634329 lncRNA downstream 45272 18278172 ~ 18280543 (+) True G2302854
TU2634358 lncRNA downstream 84905 18317805 ~ 18385920 (+) True G2302882
TU2634389 lncRNA downstream 122949 18355849 ~ 18358238 (+) True G2302913
TU2634407 lncRNA downstream 143272 18376172 ~ 18376665 (+) True G2302931
TU2634415 lncRNA downstream 158349 18391249 ~ 18391470 (+) True G2302939
XM_036971579.1 mRNA upstream 50075 17787777 ~ 17812354 (+) True LOC110488037
XM_036971184.1 mRNA upstream 77833 17763316 ~ 17784596 (+) False LOC110488036
XM_036970839.1 mRNA downstream 91617 18324517 ~ 18449153 (+) False ctnnal1
XM_036970840.1 mRNA downstream 91617 18324517 ~ 18449153 (+) False ctnnal1
XM_036970842.1 mRNA downstream 91617 18324517 ~ 18449153 (+) False ctnnal1
XM_036970843.1 mRNA downstream 91617 18324517 ~ 18449153 (+) True ctnnal1
XM_021560002.2 mRNA downstream 316053 18548953 ~ 18557288 (+) True LOC110488042
TU2633200 other upstream 669312 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 1028044 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 1073890 16785368 ~ 16788539 (+) False LOC110488019
TU2632840 other upstream 1185758 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 1222788 16636539 ~ 16639641 (+) True LOC110488017
TU2635466 other downstream 544445 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 768442 19001342 ~ 19015593 (+) False LOC110488049
TU2636184 other downstream 1121311 19354211 ~ 19359789 (+) True dgat1a
TU2636452 other downstream 1595317 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 2320433 20553333 ~ 20553684 (+) True G2305956

Expression Profile