RNA id: TU2635362


Basic Information

Item Value
RNA id TU2635362
length 4033
lncRNA type sense_over
GC content 0.44
exon number 3
gene id LOC110488043
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 18607196 ~ 18669361 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCGACCTAGTGTAGCCGAGTAGGCTACGTGCCATAAATAAGTCAAGCCTGAACTGTCTCAACCGAGTCAGAGAAAATGGTATTTGGTGTCGGCTGTTAACCTCCAGTGATTATCTTGGGAATAACAGAACAGGCTGAATTATTCCGAGCAGGGAGCTAGCTGCGTAAGTTTTACACCCTTGGCGCTGTGCTTTTGATGGCGTTCTTGCAGAGGACTGGAGACTACTGCCACGCTCAACATCCCAGAGCATAGGCTGATCCAGGGGAGGATGCCCACTGCTCTGCCTTCTCCGCCTAATACCCTGCACTGATCCCTGGGTACCAACGCATCGAGGGCTCCCTGCCTCCCAGGACTCTCCACACCCTAGGTCTGTCACTCTAAGACCCTCTCTCAGGAACCCTAATGGGATGATTGGACTAACTATTCCACGACTCTTCAGTGAAAGCCCAAGACCTCATCTAAACCAACCACAGTGACCCTCCCAAGGATCGACCAACCCGAGGACagacttgtattttttattgtcTTAAAGGAGAGACAGGACTGAGAACGTCTGCAGGAGTTTAGCCCACCAGCGACCGTGGCCACCGTGGACGACCAGTTTGTGTTCCCCTTGCGTCCCTGTCCGTGTTGCGTTCGCCCCCCCAGCTGGGTAAGGGTTGTCAACATGGCCCGTATGAACCGTCCGGCGCCGGCCGAGGTGTGCTACAAGAACATGCGGCTGCTCATCACGCACAACCCCACCAACTCCACCCTCAACAGCTTCATCGAGGACCTTAAGAAGTACGGAGCCACGACGgtagtgagagtgtgtgagatCACCTATGATAAGGCTCCATTGGAGAAGGATGGCATCACCGTGGTGGTGAGTACAGACCAGTGTCACGTCCCTCACACTTCATTGTGAagtggacacacaaacacacacgcactgtGAAGAGCAGGGTAGAGCGGAGTGTTTCGGTCTTGGACAGGACTTCCAGTACTGATTCCAGGGGTTTCAGTTGGGTATGGTAGGgtattgtcattggttgcactgATTGCACTatttgtctacataacctggttaaagcattcatgacattaccctgaagaagACACAGTGAGGTGTTCtacccaataaatgactgggagtttACAAACATGGAGTGTGTGACTCTCTTTGTTTCATGGTAGGGTAGTTGCCATACCCTAGCTCAAAACCCCACATTTTAAGTAGTCACATTTTTTTTGGTCGGGGGGTTGAATTTAAAATTCAACTGCTGTTTATAGTATTAAATTGCTCACTTTAAGACCATGCCAGCCTGCATACCTTTTTCTGTCAAGGCAGGGAGCAGAGATGGGGCCATCTGCTTTGCTGGTCAGCTGTTTAGCTAGACCGCTCCGCCActcgggctcctgagtggtgcagcactgcatctcagtgcaagaggtgtcactgcagtgaccctggttcgaatccaggctgcatcacatccggccgtgattgggggtcccatagggcagcacacaattggcccagcatcgtctgggtctggccggggtaggccgtcattgtaaataagaataaatGACTGGcagagttaaataaaggctacatTATGCAGTGCGCCGATTGCTTTGAATTTGATTTGGGCATTTAAACTCAACAATGCCTCAATATTCGCAGAATGTTTCCCTTCCCTGGCAAATAATGCAGACAGGCAAATGCAGAAATTAGCTGGTATTCATATCTGGATGCAACGCAATGAGACAGTATTGGTGGGAAGCGCAGGAGAGCAGTTCCACAAGGATGGCTTCATATAGCCTATAGCAGGGGGTCAGCAACCTTTTTTCATGTGGAGTGCCAATTTACTATTTCTAAAGATCTGTGTGCCAGTTCTGGTTTTCATATACACATTGTAGGCTACCTAACTGTGACCCCAAAAAATTGTAACCGCAAACAAATGGAATAATGTTATAGCTGGCTACTATACGGAGGTGCTGTCCATTCAGTGCCATGCCACAGAGCTCCAGTATAGACGGGTTAGCTGAGAACGCCTTGAAAATGATTTGAACGTTTCAATGGGGCAATAGGCAGTGTGTTGTTGTGactctggatggccagatagctagcaacaatgacaagaaactgccatgtgaggaatcgtaggtggctcgtttcagttagttttatcttgttcttgataccatgtcttgttttgaggtgttttgactgatgtcatctCAATGCCAATATGGCAGAAACTAATGTATGGtagtagggttgcaaagggtcggaaacgtTCCGGTAAATATCCAGAATTTTTccggaaattttccatgggaagttaagcccgggaatttggggaattctgccgaaattcatcaaaaaaaaaaaagttagtttataacagtgaaccttttttgtgggatacacataaggtaATTTTAGGGCTTGTGGGATATTTTGGTGAAACTATcaccaattcaatggaattgcaaccttCTGCATGCActgtgcactcttccatcacatgtgcagctgCACTCTTCCATCAGAAtcacagctgattctcaagatcttgcacactaatgagatgctatcgAGCTCACTCTACTACACTGTCTTAGCCAAGggctacatgctttctggtaagttttgattacaatactgagtggggtgaatatatttgatgacatacattattttttgttaactagtaaatagtagcctacagcaaagtgtgtttgacctctgcgcaccgaacccgttagcgggattaaatttgacaacatacggtgatcgctacataaatagtcctATTAAACAtgaatgaaaatacaagtgtctcacatggttCGAacgcctagaatcttgctaatccaactgcgttgtcagatttaaaaaatgatttattgCGAAAGAATACGCTGCGATTATCTGAGCACACACCCCCATATCAAACTACTTATTCAGCCAGCACTTGCGTAACGAAATCACAGATTGCATtgaaataaatagtttaccttttgaagatcttgctctggttgcaatcccaaggctcatagttacacaatgaatggtcttttgttagGCTATAAACAATGGATTTAACcgaacacaaaacattttgtgaactcTTATCTCGTTGAATTTCGTGTCATTCAATTTTCAACGTAAAATAGACAGGCTTTCCCTGACTTTaaccagtcatgtttggtttccttGCAATCAAcagtttgtttgtaacacaaccaaacatgACGGGTCATTTTGCGGGACGTATTGACCCGGAAAAAACGATTAGAAGACAACAAGTGACGAGCCCATTGTGCACCAATTATATGACCACTGTCTCGTTGATTGAatgtcttttaacccaatgaccactgatcgtcttgaaatctagctgggtagatagccattGACCATAGGTAAACGGCAATATCCCATGATTCtttgttgtaaaaaaaaactttccattGAACGCTGGCGTAAGGACCGTTCTTTCGCCATTGCCAATTCTACCGCGAAGGAGCAAAGCTTATTATGCACAGCAGTATTTTGGTGACTTGCACCTTCAGCTGTTTATTTATCCAACATCATGGCGAATAAGTCAAGGAAAGCAAATTCTAAGAGTAGATATACGAATGTAGAAACAATTTTAGAGGAAATTCATTGTGAAAGTGAGACAGATCTGCTTTTTTGAAGACTCCATTTTGAAGACTGAAACTGAGGCATATTTTTTGAAAggagaggacattgttttggactggtaagttgctctcatgctaatgccgttgtttgaaattaacataaaatattatttgtgattgtttttacattttatttgcaatATATAAAGATGTAATGAAATGGGTAAATTACACTTTAGCTAGTCATTGTGAGTGAGGGTCTGTTTGTTTGTATGAGAACGACCATagcctatgtctgtgtgtgtgtatacagtgggacaaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagaagcctgtaattttca

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2635351 lncRNA upstream 31125 18603656 ~ 18603969 (+) True G2303763
TU2635346 lncRNA upstream 36800 18598022 ~ 18598294 (+) True G2303758
TU2635340 lncRNA upstream 41212 18593666 ~ 18593882 (+) True G2303752
TU2634434 lncRNA upstream 205775 18429074 ~ 18429319 (+) True G2302958
TU2634433 lncRNA upstream 208649 18426205 ~ 18426445 (+) True G2302957
TU2635456 lncRNA downstream 103223 18749611 ~ 18750729 (+) True G2303845
TU2635356 lncRNA downstream 122266 18768654 ~ 18800607 (+) False G2303768
TU2635359 lncRNA downstream 122266 18768654 ~ 18772335 (+) True G2303768
TU2635374 lncRNA downstream 140846 18787234 ~ 18790181 (+) True G2303776
TU2635539 lncRNA downstream 195982 18842370 ~ 18842677 (+) True G2303892
XM_021560002.2 mRNA upstream 77806 18548953 ~ 18557288 (+) True LOC110488042
XM_036970839.1 mRNA upstream 185941 18324517 ~ 18449153 (+) False ctnnal1
XM_036970586.1 mRNA downstream 74604 18720992 ~ 18732451 (+) False LOC100170213
XM_036970587.1 mRNA downstream 74604 18720992 ~ 18732451 (+) False LOC100170213
NM_001129992.1 mRNA downstream 74672 18721060 ~ 18732437 (+) True LOC100170213
XM_036970591.1 mRNA downstream 95309 18741697 ~ 18768506 (+) False si:ch211-80h18.1
XM_036970592.1 mRNA downstream 95309 18741697 ~ 18768506 (+) False si:ch211-80h18.1
TU2633200 other upstream 1441977 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 1800709 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 1846555 16785368 ~ 16788539 (+) False LOC110488019
TU2632840 other upstream 1958423 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 1995453 16636539 ~ 16639641 (+) True LOC110488017
TU2635466 other downstream 130957 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 354954 19001342 ~ 19015593 (+) False LOC110488049
TU2636184 other downstream 707823 19354211 ~ 19359789 (+) True dgat1a
TU2636452 other downstream 1181829 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 1906945 20553333 ~ 20553684 (+) True G2305956

Expression Profile