RNA id: NM_001129992.1


Basic Information

Item Value
RNA id NM_001129992.1
length 2775
RNA type mRNA
GC content 0.46
exon number 23
gene id LOC100170213
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 18720992 ~ 18732451 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTAGACCTACTGGAAACTATAGAGACACCTGAGTGTTGCCCCACTGGCTAAACTATCCCATCACAATGTTGTCACGACTGTTGATTGTTCCTTTGATCTTTGCTTTGGCTGGTCTTGCTATCTCAGCCCCTGTTAATGATGGAACCGAGGCAGACAATGATGAGAGAGCTGCCTCCTTGCTAGTGCACCTTAAAGCTGACAAAGATGGCGGAGGCCTCACAGGGAGCCCGGATGGAGTCTCCGCAGGGACCACAGATGGGACTGATTCCAGTAAAGAACTAGCAGGAGGTGCAGTGGATTCCTCACCTGATACAACAGACACcccagATGCCAGTAGCAGTGATATATTCCCAGACACAAACAACAGAGATACCAGCGTGGAAACTACAGGCAATCCTGATGACTCTGATGCCCCAGATGCAGCTGAATCAGCAGGCAGCCAAGATACAACGGATGCAGCTGATGCCTCTGAGGCTGTGGCAGAGACCGTAGACACTTATGATATACCAGATACAGATGGTgctgatgacagggagaaggtgTCGACAGAGGTGTCAACAAAGGATTTGGACTCGGCAGGTGTGGATAAGTCTCCAGAAAGTGACTCCACAGAGTCTCCAGGAAGTGACTCCGCAGAGTCTCCAGGAAGTGACTCCGCAGAGTCTCCAGGAAGTGACTCCACAGAGTCTCCAGGAAGTGACTCCACAGAGTCCCCAAGAAGTGACTCCACAGATGAAGTGCTGACAGACGTGCAAGCTGACTCTGCTGATGTGACCAGTGATGACATGGATGAGGCCACAGAGACGGACAAAGATGATGACAAGAGTGACGACAAGAGTGATGCAGATGCTGCCACAGACAAAGATGACAGTGATGAGGATAAGGACACTGAACTAGATGGTAAGGCCCATGCagaagacacacagacagaggaagcGGCAGACAGCGACAGCAAACAAGGCGCTGCAGACTCAGACTCTGACACAGACGATGACAGGCCAGAGAAAGACGTTAAGAACGACTCAGATGACAGCAAGGACACCACCGAAGACGACAAACCAGACAAAGATGATAAGAAAAACAGAGACAGCGCAGACAACAGCAATGATGACAGCGATGAGATGATCCAGGTCCCCAGGGAGGAACTAGAGCAGCAGGAAATTAacctggaggagggaggagtgatTGGCAGCCAGGAGGAGACTGTAGCATCAGacatggaggaggggagtgatgtGGGGGACCAGAAGCCCGGCCCTGAAGACAGCATCGAGGAGGGAAGCCCTGTAGGGAGGCAAGATTTTAAGCATCCACAGGAttctgaggaggaggagctggagaaggaggcaaagaaagagaaggagttggaggaggcagaggaggagaggacactaAAAACAATAGAGTCCGACAGTCAGGAGGACAGTGTGGATGAAAGTGAGGCTGAACCAGACTCCAACAGTAAAAAGGACATTGGGACCAGCGATGCCCCTGAACCACAAGAGGATGACAGTGAAGAGGACACTGATGATAGCATGATGAAAGAGCCCAAAGATTCTGACGATGCTGAGTCTGACAAAGATGATAAGGACAAGAATGATATGGACAAAGAAGATATGGACAAGGATGATATGGACAAGGATGATATGGACAAAGATGATATGGACAAGGATGATGTGGACAAGGATGCCTCTGACTCAGTGGATGACCAATCTGAATCGGATGCAGAGCCAGGCGCAGATTCACACACAGttgTCGATGAGATAGATGGGGAAGAAACAATGACTCCAGATTCAGAAGAGATAATGAAGTCTGGTGAGATGGACTCGGTTGTCGAGGCAACTGAAGtTCCAGCTGACATTCTGGACCAACCAGACCAACAGGATGACATGACACAGGGCGCCTCGCAGGCCGCTGATGCTGCTGCCACCGCCCTGGCAGCCCAGTCTTAGCCCTGTGGGTTGAGCCCACAGCACGCTGTGGATGGAATCAGACATTTTGATAGACCCATCATGGTGAATCTCACAGAAAACTGACAACAAGCAATATCAACAAAAACTTTAGTCAAATGTTGCTCTTAAGTTCCTTAACCCTCTTTTGCCACTCAAAATGGTGAAGGTGTGTGCAATGTCTATGAGGATAAAATTAAATTATTCTACTTTTTTTGGTGTACATTTTTACCCACTTTTTGATTGTATTGTTTTTTTGGTAGTTGGACATTGAATCATGAAGAATGTCAACTTTGTTTTTTGTTAAAAACATTTTATGTAGTTACACTCCTGTCGTATCAACTAGCATACTGATAAAATGGTCACTATGTTCTCTTACAATGCCCTTGAGAATACCAGAAGTCCGTTTTTTAATTCAGTCATTGTAGGTTTGCTATGTTTCTGCAGGGTTCCTACTGGTTTCGTATGATGCATTGATGTCTCAGTCCTTGACAGAAAGCTCAATTGGCACGTTGTCCTTCTAACTGATAACAGCTGCTACATTTGAAAAATAACTCAGACTGACTCACAGCTCAACATTCGTTTTTTAAATTATGAAAAACATTAGGTCATTTATACAAAATGAAGTGTACATACGTTTAATGACGCAACAATGTCTTTGATAAGGTATACAAAACAAATCTAGAGAAAGTACTAAAAACGTGTGATCTACATTGGTCGAAAAGATTGTAAAATAACAATTGTATAGACATAATGAGAATGTCATTTGAATATGTACACAGGGGGGAAATCTAATAAAGACTGAGTTGTCAGGAAGTTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2635362 lncRNA upstream 74672 18635094 ~ 18646388 (+) True LOC110488043
TU2635351 lncRNA upstream 117091 18603656 ~ 18603969 (+) True G2303763
TU2635346 lncRNA upstream 122766 18598022 ~ 18598294 (+) True G2303758
TU2635340 lncRNA upstream 127178 18593666 ~ 18593882 (+) True G2303752
TU2634434 lncRNA upstream 291741 18429074 ~ 18429319 (+) True G2302958
TU2635456 lncRNA downstream 17174 18749611 ~ 18750729 (+) True G2303845
TU2635356 lncRNA downstream 36217 18768654 ~ 18800607 (+) False G2303768
TU2635359 lncRNA downstream 36217 18768654 ~ 18772335 (+) True G2303768
TU2635374 lncRNA downstream 54797 18787234 ~ 18790181 (+) True G2303776
TU2635539 lncRNA downstream 109933 18842370 ~ 18842677 (+) True G2303892
XM_036970928.1 mRNA upstream 51699 18607196 ~ 18669361 (+) False LOC110488043
XM_036970591.1 mRNA downstream 9260 18741697 ~ 18768506 (+) False si:ch211-80h18.1
XM_036970592.1 mRNA downstream 9260 18741697 ~ 18768506 (+) False si:ch211-80h18.1
XM_036970593.1 mRNA downstream 9260 18741697 ~ 18768506 (+) False si:ch211-80h18.1
XM_036970594.1 mRNA downstream 9260 18741697 ~ 18768506 (+) False si:ch211-80h18.1
XM_036970595.1 mRNA downstream 9260 18741697 ~ 18768506 (+) False si:ch211-80h18.1
TU2633200 other upstream 1527943 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 1886675 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 1932521 16785368 ~ 16788539 (+) False LOC110488019
TU2632840 other upstream 2044389 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 2081419 16636539 ~ 16639641 (+) True LOC110488017
TU2635466 other downstream 44908 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 268905 19001342 ~ 19015593 (+) False LOC110488049
TU2636184 other downstream 621774 19354211 ~ 19359789 (+) True dgat1a
TU2636452 other downstream 1095780 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 1820896 20553333 ~ 20553684 (+) True G2305956

Expression Profile