RNA id: XM_036970596.1


Basic Information

Item Value
RNA id XM_036970596.1
length 2482
RNA type mRNA
GC content 0.47
exon number 36
gene id si:ch211-80h18.1
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 18741697 ~ 18768506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGCCCCTTCCTAAGATGGGGGGATGAGAGGGTATAAAACATATAGCGGTGCCCAGTCATGCAGAAGGAAGACTAAAGCCCTGGGTGCTACATGCTGTATATGTCTACTCCTGAGTTCCCCACATAGACCTTTAGAAAAAAACATGTGGTCACGAAATCTTTTAATTGCTTCTGTAATTGTCTTTTTGGCAACAACAATTTCAACTGCTCCTGTGGAAGAGAAAGAGCCGGaggagatagaggtagaggacGGTGAAGAGGAActctcagaagaggaggaggATGATGATGACTCCAAGAGTCAGGAAAAGAATATGGGAATTGGAGCACAACAAGCTACCACAGTATCTAAAGGCCTGGGTTTAAGCGCTCAGCCTGGCACCTCATTCCAGGGCGAAGCTCCGAATGGACATAAACTCAATGGGGATAGTGCCATGCAAGCTGGGCCTGACCgtaatggtggtggtggaggaggaggagggggaggtggtgggacaggaggaggaggtggaggagattcACATACTTCACCATCTGACCCCAGCTCCCATGATGCTTCTTTGCCAGGACATGCAGGCTCCTCTTTAGATACCAGTATTGCAGGTCCCAGTTTGGATCCGAGTCAAACAGGTGCAGGCGCTCATGGCAGTTCAGTGTCACACGTGCAAGCCCCAGGAAAAGTGGTTGTCCACCAAGGAACAGGGGTTGTCCACTCAGATACAATCTCTCACGGCTCAATGGGACAAGCAGGAGGGAGCTCCACTCTCATCATTATCCATGAGGCTCATCCACAGCCTGCAGGTGGCAGCATTCATACATTTGATGCTGCTGGCTATCAGACTGAGGCTCCAACAAGTGAGACTGAAATAGAGTCACCTGAGTATGACACACCTGAGTCACCTGAGTTTAATGGTAATGGTCACAAGCTGCTTATTGGAGGAGCAGTAGAAAATGGACATGCAGCTATACCTGTAGTCACTGACCTCTTCATTGAGGACACAACTCACATGGATCCCACAGGTGCTATGGATCCACTTGGTGCAAGTTCTCACCTGGACAATACAGGTGAGTGTCCAGGTATTATCGACCAATCCAGCCATGACTTCCTCATTGGTTTAATGGGTGGTGTGGGGGATCCGTATGCTTCTGACATCCATATCGACATCTCAGATCACACTGGAATGACTTCTCAATTAGACTCAATAGctGTGGGTTCGGGTCCAGGACCGGCGTTGTCATCCAGTAGCAGCCCAGGTCCAGACGTTCCACCAGGCCTTGGAGATCACATAGGTCTAATAAGTGATTTTACAGGCCTTACTGACTACTCAGGGCCTGACCATCCATATCTGAACTCAGGTTTCGATGGATCATACCACTCAGCAGGTGATCATGCTGGTCTATCCGATACTACAGACCACCCAATAGGAGTGATGTCACATACTGATTATTCATCATCGCACATTGACCACCCAGGAAATGGTCGTCAAAGCCAGGTTACAGACACACATGGAGGTGATCATGCGGTCAATGATGTGCATCATGATGTAACAGATCCACCTGGGCAGCAGATTGTGTCTACAGATATAGGCCTACTAGATGCTGGTGAGCACGGCGTCGTCTCTCACCACGACGACATGGGAGCTGTTACAGACGGGGTCGCTGTTCAGCATCATGATGACGTTCACACCATCAGCCCTCAAACAGATACCACAGCACTTGGGGCGAACGTGTACAGCTCCAGCGCACCAGGGACGCCCGATTCTGTGCTTGGATTTGGACATGACACTACAGTTGTTGCAGAAGCACACAGTGTCTTCATTCAGACCGACTCCCCAGTCACAGCTGATGCACAAGGATCCACTCTACAGGCTTCCAGTCATCCTGGTGTAACAGAACAGACACAGCCTGCTGTTTCCGCAGCTGAACAGTACAACCCATCTGGTCAGGGTCCTGAAGGTGCAGAAAATGTGGAACTGGAGGATACCTGCTGACTTCCATATGAAGCCTCGTGTCAAGTTTCTACGCTACAGATTTCAGTGTACGGACCAGTCTGCATGGCAGAGAAACAGTGATCCAGCCCACTAGCAAATCTAGTTgtttgtgtctatgtttgtttgtttgaactTTGTCTATTTAAACTTAAAGATGACACTGTAAGTAAACTTTTTGCGCACTTGTTAATAGACGTTTTGTTTCATTCGTTGCATATATGACAAAAAGACAAGAGGGTACTAAGGAGAACCCTCTGACTCAGATGAATATGGCTCATACAAAAGCGTCATCCCTACGAATATTGTTGTACAAAAGCTCAAACAATATACTGAATCTTTATGAAGCTTTGTTATTTTGTCATTTCCACAAGTACTGTATTTCCCAGTTTAGAAAATGTGAGAAATAATAATTTTGTGTCAGAAATTGTACATTGCGAAATGTATATCAAAGTAATCTCTACATTAAAAGGAACATCTATTTTGAACATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2635362 lncRNA upstream 95309 18635094 ~ 18646388 (+) True LOC110488043
TU2635351 lncRNA upstream 137728 18603656 ~ 18603969 (+) True G2303763
TU2635346 lncRNA upstream 143403 18598022 ~ 18598294 (+) True G2303758
TU2635340 lncRNA upstream 147815 18593666 ~ 18593882 (+) True G2303752
TU2634434 lncRNA upstream 312378 18429074 ~ 18429319 (+) True G2302958
TU2635356 lncRNA downstream 148 18768654 ~ 18800607 (+) False G2303768
TU2635359 lncRNA downstream 148 18768654 ~ 18772335 (+) True G2303768
TU2635374 lncRNA downstream 18728 18787234 ~ 18790181 (+) True G2303776
TU2635539 lncRNA downstream 73864 18842370 ~ 18842677 (+) True G2303892
TU2635620 lncRNA downstream 200537 18969043 ~ 18969260 (+) True G2303963
XM_036970586.1 mRNA upstream 9246 18720992 ~ 18732451 (+) False LOC100170213
XM_036970587.1 mRNA upstream 9246 18720992 ~ 18732451 (+) False LOC100170213
NM_001129992.1 mRNA upstream 9260 18721060 ~ 18732437 (+) True LOC100170213
XM_021560006.2 mRNA upstream 72336 18635060 ~ 18669361 (+) False LOC110488043
XM_036970800.1 mRNA downstream 35212 18803718 ~ 18962860 (+) False LOC110488045
XM_036970801.1 mRNA downstream 35213 18803719 ~ 18962860 (+) True LOC110488045
XM_036971186.1 mRNA downstream 230127 18998633 ~ 19016414 (+) False LOC110488049
XM_036971187.1 mRNA downstream 230133 18998639 ~ 19016414 (+) False LOC110488049
XM_021560021.2 mRNA downstream 253869 19022375 ~ 19041121 (+) False LOC110488050
TU2633200 other upstream 1548580 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 1907312 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 1953158 16785368 ~ 16788539 (+) False LOC110488019
TU2632840 other upstream 2065026 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 2102056 16636539 ~ 16639641 (+) True LOC110488017
TU2635466 other downstream 8839 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 232836 19001342 ~ 19015593 (+) False LOC110488049
TU2636184 other downstream 585705 19354211 ~ 19359789 (+) True dgat1a
TU2636452 other downstream 1059711 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 1784827 20553333 ~ 20553684 (+) True G2305956

Expression Profile