RNA id: XM_036971187.1


Basic Information

Item Value
RNA id XM_036971187.1
length 5302
RNA type mRNA
GC content 0.52
exon number 18
gene id LOC110488049
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 18998633 ~ 19016439 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGGTGGACGTCACTTTTACAGCGCGCTAAAATTGTGGAAATAACTGCTCCGTACAATAGTTAGCTATGTCATTTTCCTGGTGTGATTTATTATTGCCCGCAGTCAGAGCTCCACAAAGAATATCGAACGCTCAAGCAAGCAAATAAATGGGCACACAGACCCAACACCTACCTCACAGACTCAATCAGGTTTTGTCTGTAGATAGCGGCAGCCGTCCCTGTTGCCAGAGAGAAAAGGACTCAGGTTGCTGGGGCACTCAGCTGAACTGTAAGAGCATGCCGGTGGCTTCCCCCAAACTGACTCTGACAGCCAAGGAAAGGGAGTCCCTCCAAGCCTCGGCCCAGTACTTTGACATGAAGCTCAAGTCAAACCTGGACCTGGGAGCTCTAACAAAGGAGAGACCGGTTTCTCTGAAGAAGTCGTTCACTCCTCGTGGAACACCTCTGAAGTCATGGAAAGATGTCCAGAGCCCATACCCATAGCTGGAGCTGCAGACAGACATACCCTGCATCTGGAGCTGCGGGCAGACAGCCATACCCTACAGCTGGAGCTGCAGACAGACATACCCTGCAGCTGGAGCTGCAGACAGCCATACCCTACAGCTGGAGCTGCGGGCAGACAGCCATACCCTACAGCTGGAGCTGCAGGCAGACAGCCATACCCTGCAGCTGGAGCTGCGGGCAGACAGCCATACCCTACAGCTGGAGCtgcggacagacagacataccctacaGCTGGAGCTGCGGGcagacagacataccctacaGCTGGAACTGCGGGCAGACAGACATATCCTGCAGCTGGAgctgcaggcagacagacatacccTGTTATCCCCTCTGCCAAAGCCAGCCAACACACGTCAAGACCTGGCCTCTCCAATGCAGACAGGGACAGAACACCCAGAGCAGCTTCCGGAGGAGCCCTTTGAGCCCCTAACAGCCTTCACGCCCTCCAAGCTATGGTCTCCTGCAGCGGGGTATCCTCAtcatacagacaggcaggcagcagggCCCAGCAGCTCAGACAGACCTTCACCAAGAGGCTGACCTCTGTATTTGATGAGGTGGGTGACGCAGAGTAGCCGGTTGTGGGTAATTTGTCTCTTGCCGTGGAAGCGGCGATGAGTTCCCCGCACGCCAAAAGGGGAGGCGCTGGCAAGGGAGAGATCGCAGGACGTGCCGCCAGTTCCTTTGTCACACCTTCCAGGCAGAACGAAGGGGCAACTCTCCTGGGGGAGAGGGCTTCCAAGAGTACCATGCCACAGGATCTGCCTTCTCCTGACGAGCACCAGCCCCAGGTTGGTGGTGGCGTAACGTCTGCAACAGACCCAGCCAGTCTGTGGCCCGCTGGACAACGCTCCTCATTAGTGTCTGgctctggaggaggagaggatgaagaaaCCAGATCAGGTCTCAAAGGACAGGCAGAGGGCGGTACGATAGAAGAGACCGCCGTCGGCGCCACCACTGCCAAGAAATCTCGAGTGAGGACCAGACAGGGCCGGGGAGGAGGGGATGTGGAGGAGGCAAGAGTGTTAACGCAGCCACCGCAGGCCGAAGGTGATGAGCTCGGATTGGAGAAGAAGGGTACAAAGAAAAGGGGTGGAAAAAGACACAGGAATCCTGACACAGATGGAGAGAACCCTGCAGGCAcggagaaagaggagtgggtggtGAAAAAGAGGAGAAGGACAGATAAAGCCCCCCAAGCGAGGAAGAAGGCTAAGGCAGGTGATGGAGACGTCAGCGATCAGGAGGATGGTGACGTCACAGAGAAGGAAGTGGTGAAGCAGAAACCAAGGGTTCCACAGGAGAACCTGCTAGGAGGTGGATGAGACATCAAATCTGCCAGGAACAGAGGGAGCAACACTATGAGACCTAAAGCCACCATGAACTCGGACGGTAACTTTGTGAAGATCAACCTGAAAAAGAAAGGATACGTATGTAGGGGCGCTGGCCTACGGAAGCAGCTAAAGGGGGAGATGTTTGGAGGGCCAGACTCAAGGTTTAGAGGGGGCTTCTgcagaagaggcagaggagggtttAGAGGCAGCTTCGGAGGGTTCAAACGTCCAGGTGACAGCTGCTTCAAGTGTGGAGGCATAGGACACTGGGCTATGAACTGCAAGggcagagTTGCAGCTCCAGTAGACAGTGCTGCTGCTGATGAGGCGTCTGCGGTTGAGGAGGAGCCCTTGGAGCTGCCAACCTTGGAGGAGGTTGCCCGGGCAACAGGAACTCTGCGTTCCGAGCCTCTGGTGGCACCCCCCAGTGTTAAAGAGGAGAATGAGTGTCAGGGAGAGAAGCAGCAGGAGGATGGTGATGAGGTCTTGTTGAATGTGATCAGGCCAGACTACAAACGTACTCCTTCTCCGCCCCCCATGCAGCCCCTCTACCCCCTAGGGGAGGACAGAAAAGTGCAAGTGGCACGTTCTGAAGTTTTTAAAGCACTCAAAGACTTTGGGTTCAAGTCTTTCAGACCAGGGCAGGAACAGGCCACCATGACAATTCTATCAGGTCTGTCCACTCTAGTGGTGCTCTCCACAGGCATGGGGAAGTCTCTGTGCTACCAGCTGCCTGCCTACCTCTATGCCCAGAGGTCCAACAGTATCACTCTTGTGGTATCACCACTGGTATCTCTTATGGACAATCAGCTATCTGGATTCCCATCCACACTGAAAGCAGCTGCTATTCACTCCAGTATGTCTAAAAAACAGAGGGAGGCAACCATTGAAAAGGTTAAGGCAGGTGAGGTCCATTTCCTGCTCCTGTCCCCTGAGGCGTTGGTAGGTGGAGGTCACTCTGGCTTTGCCTGTCTGCCCACCGGCTGACCAGCTCCCCCCGGTGGCCTTTGCCTGTATTGACGAGGCCCACTGTGTCTCAGAGTGGTCCCACAACTTCAGGCCCTGCTACCTGCGTCTCTGCAAGGTGTTGAGGGACCCTCTGGGTGTGCGTTGCCTGCTGGGTCTGACTGCCACCGCCACCCTGTCCACAGCCCTGGACATCGCTCAACACCTGGACATCACTGACCAGGACGGTATTGCTGTCCGCTCGGCCGCCGTGCCTGACAACCTGCAGCTGTCTGTCTCCATGGACCGAGACAAGGACTAGGCCCTGGTGTCTCTGCTGAAGGGAGAGATGTTCGGGTCTCTGGAGTCCGTCATCGTCTACTGCACCAGGAGAGACGAGGCCACCCATATATCTGCCCTGCTCAGGACCTGCCTCCAGGGGGTGCTGTTGCCAGCCAGGAGGAAGATGACAACCCTATAGGGAAGAAGAAGAAAGCTTTGGCCAGGAAGAAGATCCGTATAAGCCTCTGAAGTGAATGGCTGAGTCCTACCACGCCAGCATGTCGTCATCCGAGCGCCGTCGTGTCCAGAACAGCTTCATGTGTGGAGAGCTGCGCATGGTGGTTGCCACGGTAGCCTTCAGCATGGGCCTGGACAAGTCGGACGTGCTCGGCATCGTGCACTACAACATGCCCAAGAGCTTTGAGAGCTACGTGCAGGAGAtcgagagggcagggagagacgGAGTACCGGCTCACTGTCATCTCTTCCTGGAACCTGAGGGAGGGGACCTGCATGAGTTGCACATCTATGCAGATACCGTGGACTACTACACTGTGAAGAAGCTGGTGCAAAAGGTGTTTCCTCCCTACAAGTGCAGCCAGGTCTACCAGAAGTAGCAGGATCTAGCCAGGGCTCTGGAGGAGGTTGACGACTCCGAGATGATGGAACTGATGGACACCTGTGATGAGACCTCTGCTGCAGCACCAGAACAAACAAAGGAGACTAGTCAAAACACCCCCTTTGAGCAGTTGGAACAGGCCAAAGTCCCTACTGAGGACAAGGATGTACCAACTCTTCAACCATCGGAGGGGAAGCAGAAAGAACCACCAGAGTTGAGTGTTCCACTTCCCCGGAGAGGGGATggcgaacaggaagaggaggaggggccaGGGGGAGGTGATGATTGGCCCACGACTAGGGTGTGTCACACCCATGAGAGGGCCGTCCCTATGCAGGACACTGTGGAAGCCCTGGACATCACTGAGGAAGctTTGGAGACTCTGCTGTGCTACCTGGAGCTGCACCGTCAGCAGTGGGTAGAGCTGCTccaccccaccctctctgtctgtaagaTGGTCAGCTCTGCAAACTCACCATGATGTAGGGCAACATCACAACACCCGGCTCATGTtcattcattagggcacaccgtatatatttatttttaaactgtGTGCATTTTCAGTTTGCAGAACCTCGACAAGTACTGCAAACTCATTCTGAACACCTGGCCAGTCTGTTACAGTAGACTGTTTACCTGTAAGAAAAAACGTTGTGTTGGATAGGTTGTGTTTGTGTATAGTATGTAGGTGTGTATTATTTGCTCATGTGACGATTTTGTGGTCAAGTaaacattgtagcaaagtgtcatttcttcagtgttgtcacatgaaaagatatactcaaatatttacaaaaatgttagaaaaaaatacaaatcatGACAAAAACAAAGTGATTAACCAGTCATAACTAACCAATGGCAATGCAGATTACACAGTAAGCAACCAATTGATTAAACACAGGATATGACATCATGGAacactcacttttgtgatatactgtatataccactaGAACATATGTCCCATCACATGTAAATTATTTTGTTGTCATTTCCATAACATTTCACAGTTTTCTTTCCACAAATGTTTCCTACCATTGAAGCACAATGTTGCATTTTTGCAACGTTTCCAGAAAATTGTACTACacatttgagaaaaaaaaacagattatTGTCATAATCAGAGGCCTAATACAAGTATTTCTGAAGGGTAGTAACATTAATTCCTCATTTGGATCTATGCTTGGGTCTCACAGGGTTAAGGAAATGGATGGCTGGAATGAGGAAGTTAAAATACGAACCTACAAATGTGACTCTCCCATTGTATAAACATTGGTTTATATATTCAAGATTACTCTTTAGTTTATATGTATTCAAGATTACTCTTATTTGATTTTGAAGTGTCTGCGCCAGCAATTTATTTGACTAAGCCGGTCaaggttggggcggcagggtagccttgtggttagagcggtggactagtaaccgaaaggttgctagttcaaatcccccgagctgacaaggtccaaatctgtcgttctgcccctgaacaggcagttaacccccccccccccccccccccccccccctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtttaaaaaaatgttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2635640 lncRNA upstream 12854 18985561 ~ 18985785 (+) True G2303980
TU2635620 lncRNA upstream 29379 18969043 ~ 18969260 (+) True G2303963
TU2635539 lncRNA upstream 155962 18842370 ~ 18842677 (+) True G2303892
TU2635374 lncRNA upstream 208458 18787234 ~ 18790181 (+) True G2303776
TU2635359 lncRNA upstream 226304 18768654 ~ 18772335 (+) True G2303768
TU2635628 lncRNA downstream 472 19016886 ~ 19017486 (+) True G2303968
TU2635627 lncRNA downstream 1675 19018089 ~ 19018427 (+) True G2303967
TU2635651 lncRNA downstream 12883 19029297 ~ 19029645 (+) True G2303990
TU2635614 lncRNA downstream 25005 19041419 ~ 19043466 (+) True G2303957
TU2635656 lncRNA downstream 38583 19054997 ~ 19055199 (+) True G2303995
XM_036970800.1 mRNA upstream 35779 18803718 ~ 18962860 (+) False LOC110488045
XM_036970801.1 mRNA upstream 35779 18803719 ~ 18962860 (+) True LOC110488045
XM_036970601.1 mRNA upstream 230133 18741697 ~ 18768506 (+) False si:ch211-80h18.1
XM_021560021.2 mRNA downstream 5961 19022375 ~ 19041121 (+) False LOC110488050
XM_021560020.2 mRNA downstream 5969 19022383 ~ 19041121 (+) False LOC110488050
XM_021560022.2 mRNA downstream 6594 19023008 ~ 19041121 (+) True LOC110488050
XM_021560023.2 mRNA downstream 103537 19119951 ~ 19124074 (+) True scrt1a
XM_036970734.1 mRNA downstream 337764 19354178 ~ 19379095 (+) False dgat1a
TU2635466 other upstream 215612 18777345 ~ 18783027 (+) True G2303854
TU2633200 other upstream 1805522 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 2164254 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 2210100 16785368 ~ 16788539 (+) False LOC110488019
TU2632840 other upstream 2321968 16669607 ~ 16676671 (+) False G2301522
TU2636184 other downstream 337797 19354211 ~ 19359789 (+) True dgat1a
TU2636452 other downstream 811803 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 1536919 20553333 ~ 20553684 (+) True G2305956
TU2638086 other downstream 1796775 20813189 ~ 20814189 (+) False G2306173
TU2638087 other downstream 1796775 20813189 ~ 20814298 (+) True G2306173

Expression Profile