RNA id: XM_021560026.2


Basic Information

Item Value
RNA id XM_021560026.2
length 2064
RNA type mRNA
GC content 0.46
exon number 17
gene id dgat1a
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 19354178 ~ 19379095 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGAGGTTTATAACTGGGACTGCAACCTTCTCCTCGACAGCATGTCGGGCTGGACTTTACAGCAGAGGCTCGAGGGAGAAACGTCTAGTTCAATTCTAGCAAGGTACGGTTGAATGCTTCAAATTTAAAAAATGGGTGACAGAAACGATAGAGTCCCCATGATGACACGCAGAACAAGGAGAACCACCATCTGCGCTACGCCAGCGGGTGCCAATTCTAAACAAGCCAACGGCAGCGCAGGGGAAAAAACTTCAAGCCAACCGAGCCACAGCAACCGGAAAGTGAAGGAGGAAAAACGGGTGCACGAGCCGGTCACTACACCACGCAAGGAGAGGAGCAAAACCAGCGAAAGATTTAGCTGCCATGTCCTCCAGGAGTCCCTGCTCAGCTCAGCCAGTGGCTACAGTAACTATAGAGGCATCCTCAACTGGTGTGTGGTCATGCTGGTCTTGTGCAATGCACGCCTTTTCCTGGAGAATCTAATAAAATATGGGATACTGGTGGACCCCATCCAAGTGGTTTCACTGTTCTTAAAAGACCCATATAACTGGCCTGCATCTTGCCTTATCATTGTTTCGAATGTGTTCATAATGGCAGCTTTGTACACGGAGCGGAGGCTATCAGTGGGCACCATCTCAGAGACTACTGGAACATTCCTTTACTTGGTCAATCTGACCACCCTCCTCTTTTTTCCATCAGCCACTGTGCTCATGCTGACCTCCATTACCCCAGTGGGTGGAGCCTTTGCCCTGTGTGTCTATACCATCCTCTTCATGAAGTTGTACTCGTATAAGGATGTGAACATGTGGTGCAGAGAGATTAGGCATACCAAAGCCCGCACCCTGACCCGCTCCCATTCATGTCCATCAGTCGCCCAGTCAAATGGGTCAGCTGTACACGCTCATGTGTCCTACCCTGGGAATCTCACACACAGAGATATATATTACTTTGTGTTTGCCCCAACTCTCTGCTATGAACTGAACTTCCCCCGGTCACCACGGATACGCAAGAGCTTCCTGCTCAGGAGACTCTTTGAGATGCTGTTCTTCATACAGTTACAGATTGGATTGGTACAACAGTGGATGGTGCCGACTATTCAGAACTCCATGAAACCATTCCAGGATATGGACTTTTCCAGAATGATCGAGCGCATGCTGAAACTGGCTGTTCCCAATCATTTAATCTGGCTCATCTTTTTCTATTGGTTTTTCCACTCTTCCATGAACTTCGTAGCTGAGCTGATGCGGTTTGGCGACAGGGAGTTTTACCAGGACTGGTGGAACTCTGAGACGGTCACTTATTTCTGGTCTAACTGGAACATTCCTGTGCACAAGTGGTGCCTCCGCCACTTTTACAAGCCTCTCATGGGGAGAGGTGTGAATAAGTGGGTCGCTCAGACAGCCATCTTCCTGGTCTCCGCCTTCTTTCACGAGTACTTGGTGAGCGTTCCTCTGAAAATGTTCCGACTGTGGGCGTTCATGGGCATGATGTCTCAGATTCCACTCGCCTGGTTCGTCGGCCGCTTCCTGAGAGGTAACTATGGTAATGCAGCAGTCTGGATCTCGCTCATCATTGGCCAGCCCATCGCCGTACTGATGTACGTCCACGACTTCTACGTATTACATTACGTGTCACAATCATGAGCAGTTGGCCGCAAGCAGAGGAGCAATATATTCTACTAAATAaggaaaaatgtttattttgaaaGGGAAATGTTTTATATGAAGCTCAACTGATTAGTAAGAATGTACTACAAAAAGTTTTTGGCCTTCAGTTTCTCGAATGCACTGATACACTACAGAGACACTTGGCTCTAGTCCAGTCATGTGCAATTGTTGTGAAACACTACCCTGCCAAAGCTAGAGAACATTTGTATGCCTTTTCTGTTTCTTACTTTAATAGTCTACAACTATGAAGATCAATGCAAAAAACtctacagtacctgtcaaaagtttggacacacctactcattcaagggtttttcctttatttttactattttctacattgtagaatattagtgaagacatcaaaactaataacacatggaatcatgtagtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2636175 lncRNA upstream 9364 19335218 ~ 19344815 (+) True G2304434
TU2636138 lncRNA upstream 77314 19273987 ~ 19276865 (+) True G2304399
TU2636071 lncRNA upstream 205969 19145056 ~ 19148210 (+) True G2304335
TU2636062 lncRNA upstream 208009 19132005 ~ 19146170 (+) True G2304326
TU2636017 lncRNA upstream 297898 19056071 ~ 19056281 (+) True G2304286
TU2636238 lncRNA downstream 75646 19454741 ~ 19455451 (+) True G2304491
TU2636310 lncRNA downstream 222713 19601808 ~ 19602812 (+) True dennd3a
TU2636347 lncRNA downstream 289079 19668174 ~ 19758204 (+) True G2304585
TU2636418 lncRNA downstream 375062 19754157 ~ 19754686 (+) True G2304651
TU2636330 lncRNA downstream 405489 19784584 ~ 19788459 (+) False G2304575
XM_021560023.2 mRNA upstream 230105 19119951 ~ 19124074 (+) True scrt1a
XM_021560021.2 mRNA upstream 313058 19022375 ~ 19041121 (+) False LOC110488050
XM_021560020.2 mRNA upstream 313058 19022383 ~ 19041121 (+) False LOC110488050
XM_021560022.2 mRNA upstream 313058 19023008 ~ 19041121 (+) True LOC110488050
XM_036971187.1 mRNA upstream 337765 18998639 ~ 19016414 (+) False LOC110488049
XM_036971445.1 mRNA downstream 5489 19384584 ~ 19429517 (+) True trpn1
XM_021560030.2 mRNA downstream 88735 19467830 ~ 19539008 (+) False LOC110488054
XR_002468338.2 mRNA downstream 88735 19467830 ~ 19539008 (+) False LOC110488054
XM_036970988.1 mRNA downstream 93698 19472793 ~ 19539008 (+) True LOC110488054
XM_021560032.2 mRNA downstream 174095 19553190 ~ 19602824 (+) False dennd3a
TU2635622 other upstream 338586 19001342 ~ 19015593 (+) False LOC110488049
TU2635466 other upstream 571152 18777345 ~ 18783027 (+) True G2303854
TU2633200 other upstream 2161062 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 2519794 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 2565640 16785368 ~ 16788539 (+) False LOC110488019
TU2636452 other downstream 449122 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 1174238 20553333 ~ 20553684 (+) True G2305956
TU2638086 other downstream 1434094 20813189 ~ 20814189 (+) False G2306173
TU2638087 other downstream 1434094 20813189 ~ 20814298 (+) True G2306173
TU2638628 other downstream 1928337 21307432 ~ 21311878 (+) False LOC110488072

Expression Profile