RNA id: TU2636310


Basic Information

Item Value
RNA id TU2636310
length 781
lncRNA type sense_over
GC content 0.41
exon number 3
gene id dennd3a
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 19553190 ~ 19602824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAATTCAGCATGTCTTAAAACCAGAAATGAGATGTGTCCTTTATGGTGATGAAATAATCTGTTAACCGGTCCTGTCAGATCTGGGTTGGGGGCCGAGGGTGGAGTTCGGGGAAGTCCAGGGGGAAGATCTACGTAGTGGATGCCCAGCGACACACGGTGGAGAAGGAGCTGGTAGCTCACACAGACTGTGTCCAGGCACTGTGCTCCGCAGAGGACCGCTATGTGCTGAGTGGGGCAGCCCGCGAGGACGGGAAGATAGCCATCTGGAAAGTGGAGTAACTTGAGTGGAAATTCAACACTGCCACCTGGTAGCTGGGGGTCAGAACAGGATTGTGTTCAGTAGGCACCAAACGGTagaaaactgactgaaacaggaacTTGTTCATTAAGAAACGCTCATTTTTGTTAACCATTGAAAATTGTTTTGCTAAGGTGTGCCCTAATAACCCAGGTGATTATGAACAGTTGCATAGGATGTCTTTTAATTGATGGAATAAACTTTCCAACCTATAGTTTTAAACACATGGATATTATTGTTTATGTTAAATGgaaacaaataccaaaacagTTTTGGGTGTCATTTTCCTTTTAAGCAGTACACTGCTTATTGTATTATTTACATCAAAGGAGGAACCTTAGATGTTTTTATATTGGGATGCTTCACAGGTTACTCACATCCAAATAAGTATTTCATATTTAATGTATGTGCTTTTTCTTCTAAatatgtttttgtatgtttaaTTCACTCAACCCAAGCTATGCATTTTAGTATTATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2636238 lncRNA upstream 146357 19454741 ~ 19455451 (+) True G2304491
TU2636175 lncRNA upstream 256993 19335218 ~ 19344815 (+) True G2304434
TU2636138 lncRNA upstream 324943 19273987 ~ 19276865 (+) True G2304399
TU2636071 lncRNA upstream 453598 19145056 ~ 19148210 (+) True G2304335
TU2636062 lncRNA upstream 455638 19132005 ~ 19146170 (+) True G2304326
TU2636347 lncRNA downstream 65362 19668174 ~ 19758204 (+) True G2304585
TU2636418 lncRNA downstream 151345 19754157 ~ 19754686 (+) True G2304651
TU2636330 lncRNA downstream 181772 19784584 ~ 19788459 (+) False G2304575
TU2636332 lncRNA downstream 181772 19784584 ~ 19788459 (+) False G2304575
TU2636333 lncRNA downstream 181772 19784584 ~ 19788459 (+) False G2304575
XM_021560030.2 mRNA upstream 62800 19467830 ~ 19539008 (+) False LOC110488054
XR_002468338.2 mRNA upstream 62800 19467830 ~ 19539008 (+) False LOC110488054
XM_036970988.1 mRNA upstream 62800 19472793 ~ 19539008 (+) True LOC110488054
XM_036971445.1 mRNA upstream 172291 19384584 ~ 19429517 (+) True trpn1
XM_036970734.1 mRNA upstream 222713 19354178 ~ 19379095 (+) False dgat1a
XM_036971804.1 mRNA downstream 5166 19607978 ~ 19784439 (+) False ptk2aa
XM_036971795.1 mRNA downstream 43442 19646254 ~ 19784439 (+) False ptk2aa
XM_036971787.1 mRNA downstream 67027 19669839 ~ 19784439 (+) False ptk2aa
XM_036971785.1 mRNA downstream 67028 19669840 ~ 19784439 (+) False ptk2aa
XM_036971791.1 mRNA downstream 67028 19669840 ~ 19784439 (+) False ptk2aa
TU2636184 other upstream 242019 19354211 ~ 19359789 (+) True dgat1a
TU2635622 other upstream 586215 19001342 ~ 19015593 (+) False LOC110488049
TU2635466 other upstream 818781 18777345 ~ 18783027 (+) True G2303854
TU2633200 other upstream 2408691 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 2767423 16827065 ~ 16834385 (+) True LOC110488022
TU2636452 other downstream 225405 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 950521 20553333 ~ 20553684 (+) True G2305956
TU2638086 other downstream 1210377 20813189 ~ 20814189 (+) False G2306173
TU2638087 other downstream 1210377 20813189 ~ 20814298 (+) True G2306173
TU2638628 other downstream 1704620 21307432 ~ 21311878 (+) False LOC110488072

Expression Profile