RNA id: XM_036971807.1


Basic Information

Item Value
RNA id XM_036971807.1
length 2996
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC118946534
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 19777269 ~ 19780313 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACACTCACACCACCAAGACAACACTGTCTTAATGTCTTACTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTACTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTACTCCAGGCTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCGTTACAGCAACAAGACAACACTGTCTCAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACTCTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTTACCATCATAGCAACGCATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAAGACAACACTGTCTCAATGTCTTATTCCAGGGTCACCGTTACAGCAACAAGACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTTACCATCATAGCAACGCATCACCAACACAACACTGTCTCAATGTCTTATTCCAGGGTTACCATCATAGCAACGCATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTTACCATCATAGCAACGCATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACGCATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAAGACAACACTGTCTTAATGTCTTATTCCAGGGTCACCGTTACAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACGCATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAAGACAACACTGTCTTAATGTCTTATTCCAGGGTCACCGTTACAGCAACAAGACAACACTGTCTTAATGTCTTACTCAAGGGTCACTGTTACACAAAACATAGCTTGGTTTAGCCTGGTGCTAGATTTGTTTGTGCCATCTTGCCAACTCCCATAGGAGGCTGTCTAGGAATTGGCAAGGTGGCacaatagatctgggaccagactacatgACTCATACCTAGGAGTTGCAGGGCCTAGAGTTTCTCCTGGttaggtcacatggtcagggaaGTGTCTGAACCACCACCATGACGTTGTATGAGAAAGAGACCATTACTTCAATATTGAGACAATGCATGTGCTTTTGCCTGCTATGAGTTGCTGCAGCTGTTTCAAGCATGCTTTCTCTTTCTCACCTGGCCATCACCACTTCCTTTTATAAGTTCTTACATAAAATACGTCCTCTCAGTTTATTCAAGAGCTGTGAGAACTTGAACCTATAGCCAGATTCAGAGTAGAATGGGATCTGAGTGGAAAAGCTCTGAAAACATGTCAGTATTTCCCCTGGTTCACCAGGAGCCCAGGCGGGTAAAGTTGCTCCTAGTCGGCAGAACAGAACGGGGCTCCTAGATCAGCGCAGCTCTGAagccctctctctccgtctctccccctcccaagTCTCAGACAGCACAGAGCAAGGCTAGCACAACCCAAAGCCCATCTCTCTGACAGAGATGGTACTTAGACACATGGACAGATATAGAAATACACACGAAAGACACCAGTggatacacacacttacacaagactcacacacatacacttatctGCACttggaacacacacatacacttacatgtacagtgcattcggaaagtattcagaccccttgacttttcccacattttgttatgttacagccttattaagtcaaggggtctgaatactttccaaatgcaccgtaCATACCCAGCACCATGCTTGTCCATGGGAATCTAAAATATACAGTGACTGTCCCAAAACATAAAAGGCAGTTTTTTTCCTGGCAAGCTATCATTCTCATGGGGGGGGTTGGTGGTTAGATAAAGATCCTCCCACCCTGACTCTACCATCCACCCCTACACCGCCAGGGTCGTGACCTTTCTGCCACACAGCCCCACCCAGACAGACGCTGCCAAGCCGGCCCAGAAAAGGCCCACGGTAAAACCACACTTTCTGGGCTTTTATTTTGGATCCTAGTTATGCAACAACCGTCCATTTCGAGAGAAGCCAGTGAAATGAATACTGTTGGAATGGAGAGAGTGCTTTTTCTCTCTCGTAACTTTCCAAGCAGGCAATTTGAAAGGAGACCCTTAGCGAAGCTGCTCTTCTTCTAGCTCTGAAAATAAACCCCAATTAAAACAGAGGCttgtggggcctcccgggtggcgcagtagttaagggtgctgtactgcagagTCAGCtgtgagagactctgggttcgcccAGGCTCTGTAACcggcgaccgggaggtccgtgggtcgtccaggttag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2636347 lncRNA upstream 19065 19668174 ~ 19758204 (+) True G2304585
TU2636418 lncRNA upstream 22583 19754157 ~ 19754686 (+) True G2304651
TU2636310 lncRNA upstream 174457 19601808 ~ 19602812 (+) True dennd3a
TU2636238 lncRNA upstream 321818 19454741 ~ 19455451 (+) True G2304491
TU2636175 lncRNA upstream 432454 19335218 ~ 19344815 (+) True G2304434
TU2636330 lncRNA downstream 4271 19784584 ~ 19788459 (+) False G2304575
TU2636332 lncRNA downstream 4271 19784584 ~ 19788459 (+) False G2304575
TU2636333 lncRNA downstream 4271 19784584 ~ 19788459 (+) False G2304575
TU2636334 lncRNA downstream 4271 19784584 ~ 19788459 (+) False G2304575
TU2636335 lncRNA downstream 4271 19784584 ~ 19788459 (+) False G2304575
XR_002468339.2 mRNA upstream 174445 19553469 ~ 19602824 (+) False dennd3a
XR_005041341.1 mRNA downstream 213829 19994142 ~ 20001374 (+) True LOC118946489
XR_005041417.1 mRNA downstream 934756 20715069 ~ 20719092 (+) False LOC118946542
XM_021560045.2 mRNA downstream 1422779 21203092 ~ 21205078 (+) False ccdc127b
XM_036971420.1 mRNA downstream 1442608 21222921 ~ 21229758 (+) False LOC110488068
XM_021560050.2 mRNA downstream 1442608 21222921 ~ 21231008 (+) False LOC110488068
TU2636184 other upstream 417480 19354211 ~ 19359789 (+) True dgat1a
TU2635622 other upstream 761676 19001342 ~ 19015593 (+) False LOC110488049
TU2635466 other upstream 994242 18777345 ~ 18783027 (+) True G2303854
TU2633200 other upstream 2584152 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 2942884 16827065 ~ 16834385 (+) True LOC110488022
TU2636452 other downstream 47904 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 773020 20553333 ~ 20553684 (+) True G2305956
TU2638086 other downstream 1032876 20813189 ~ 20814189 (+) False G2306173
TU2638087 other downstream 1032876 20813189 ~ 20814298 (+) True G2306173
TU2638628 other downstream 1527119 21307432 ~ 21311878 (+) False LOC110488072

Expression Profile