RNA id: XR_005041341.1


Basic Information

Item Value
RNA id XR_005041341.1
length 237
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC118946489
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 19994142 ~ 20001374 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGAGCTTATTTTTGTGTCCTGTGTTGGTTTTGTTGATATTATTTTGTAGCTGCTCCTTCAGAGggggggaaGGCGTGCCAGGTGGTGCTTAAGGTTAGGTGGAAACCGGTGTAGCTGACAGAGCCATCGCTGCGGAaagccaggtgcatggtgttggAGCTGCTCTCGATCCTCTCCGGAAGCTTGCTGTCCTGAAAGCTACCAATCAGAGGGCTGTTGCTGTCTGGTCCGTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2636477 lncRNA upstream 69183 19883185 ~ 19924959 (+) True G2304703
TU2636427 lncRNA upstream 199061 19794149 ~ 19795081 (+) True G2304659
TU2636428 lncRNA upstream 199089 19793913 ~ 19795053 (+) False G2304659
TU2636426 lncRNA upstream 200451 19793270 ~ 19793691 (+) True G2304658
TU2636330 lncRNA upstream 205683 19784584 ~ 19788459 (+) False G2304575
TU2636592 lncRNA downstream 59293 20060667 ~ 20061476 (+) True G2304816
TU2637832 lncRNA downstream 538735 20540109 ~ 20540334 (+) True G2305932
TU2637834 lncRNA downstream 540048 20541422 ~ 20541721 (+) True G2305934
TU2637835 lncRNA downstream 540408 20541782 ~ 20541987 (+) True G2305935
TU2637840 lncRNA downstream 543408 20544782 ~ 20545047 (+) True G2305940
XM_036971804.1 mRNA upstream 209703 19607978 ~ 19784439 (+) False ptk2aa
XM_036971795.1 mRNA upstream 209703 19646254 ~ 19784439 (+) False ptk2aa
XM_036971787.1 mRNA upstream 209703 19669839 ~ 19784439 (+) False ptk2aa
XM_036971785.1 mRNA upstream 209703 19669840 ~ 19784439 (+) False ptk2aa
XM_036971791.1 mRNA upstream 209703 19669840 ~ 19784439 (+) False ptk2aa
XR_005041417.1 mRNA downstream 713695 20715069 ~ 20719092 (+) False LOC118946542
XM_021560045.2 mRNA downstream 1201718 21203092 ~ 21205078 (+) False ccdc127b
XM_036971420.1 mRNA downstream 1221547 21222921 ~ 21229758 (+) False LOC110488068
XM_021560050.2 mRNA downstream 1221547 21222921 ~ 21231008 (+) False LOC110488068
XM_021560051.2 mRNA downstream 1221547 21222921 ~ 21231008 (+) True LOC110488068
TU2636452 other upstream 164181 19828217 ~ 19829961 (+) True G2304678
TU2636184 other upstream 634353 19354211 ~ 19359789 (+) True dgat1a
TU2635622 other upstream 978549 19001342 ~ 19015593 (+) False LOC110488049
TU2635466 other upstream 1211115 18777345 ~ 18783027 (+) True G2303854
TU2633200 other upstream 2801025 17186565 ~ 17193117 (+) True G2301841
TU2637856 other downstream 551959 20553333 ~ 20553684 (+) True G2305956
TU2638086 other downstream 811815 20813189 ~ 20814189 (+) False G2306173
TU2638087 other downstream 811815 20813189 ~ 20814298 (+) True G2306173
TU2638628 other downstream 1306058 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other downstream 1306184 21307558 ~ 21311807 (+) True LOC110488072

Expression Profile