RNA id: XM_036971420.1


Basic Information

Item Value
RNA id XM_036971420.1
length 2792
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC110488068
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21222921 ~ 21231008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACCCCACTTCCGGTGTGTCAGAACGGGAAAAGTAGGCGTTTCGAGATGTGGTATTTTCTGTTTGTGGTAGTAGGGAGATAACCATAGTAACGGATACAAGCGCACATAGGTAGGTCTGAGGCCAACACAGAAGTCGGTGTTTTTGTGAGGCATCGACTGTAGTTATTTTCTTCCATGTATTTGTAATATTTGTTATGTCAACTAACTgaaacatttcagttgtacaCGCGGAACTCTGTAAAGCAGGTATTTTTTTGCACAAACGCGTTTGCAATGCTTGCATCGGAGGCTGCAATGACTAAAAGTTATTTGACAACTTCAACTGGATCGAAAGCCAAAGTGCATCGAAGAAAACATGCGATCCCAGTTATCAAACATATAGCAAAAGACAATGATCAAGAGAAACAGGAGGTTCTCACTAAACCTATTGAACTCAGTCGTGTGATACATTTTCTTGAGGATCCTTTAGCAGCTActttgaaagagagacagattttTGCTTTGAAGAAAGTAGTGAAGAGATGTCAAAAAGGCTTTCTTTTGAAAGAGCTGGCAGATGTTTTTAAGATTTTATATATCTGTGCTGAGAAGTCCAAAGATCATCCTGAATATACTTCAGTGCTATGTGACTTACTGAAGATTTGTCGGCTTCCTTTTCTAAAGGAAAAGACCTCTGATGAAGTGACCTATGCACAGACTGTCAAAGAATCATTCTCTCAGATGGGGTTCCTGATGAGGGTGCCAAACGCTGAAGTGAGGAACCAAATCTGCCACTCTATTATATCCGTGTACAGCTCTGTGACATCAAAACACAGTGTGGATGGTATGGACAGTCTTTCAAAGCCTGCAGCTGCCTCAAAGCCAGCTGTTGCCTCTCACAGATTCTCTAAACAGTCAATGAGACTCCACCCTACCAGCCTAGGCTACAGGGTGCAGCTGTTGGAGCAGAGTGGGCTGGCTGAGACTCTGGTCCTGTCCATGgccctcctggagaaccagcctGCAGTCAAGCTCCAGGTCCTACAGACTCTTCAGATGCTCTCCAGCTCATCTGATGTGAACTGTAGCCTAATATTAAAGGCACAGGGGGCACAGCAGATCTGTTTCCATATGAATGAGCCAGACCCTTCAGGGCAAGTCCTGTTCCGCTCCTCGGAGATCCTATGGAACTTGCTGGAGAGAGGTTGCAAAGAGGAGGTTACAGCTCAATTGAGCAACATGGACTGTATTATGGCTCTGAAAGAGGCATTTTTGCACCAGCTGCTGAATGGCTTTCGACATTACGACTTCCAACTCAGGAATGATCTACTGGTGATCACAACTCTCATAGCTGAAAACCCCAAATCTCCACTCATTGAGAGTTTATTTGCCAAGCAACTCATTCTTTTTGTTACATTTCCAGAACTCAAGAGTCACAACCCGTTGGTCCGCAACCTCAAGCTTTCCTATAACAATGAAGATTTTGAGATGAAAAGGTTGCTACTAAATCTGGTTGTTGTCATGTCAAAAGACTTATCTGCTCTGCAGCTGTTCAAAGAGGGCCATGTTGTCCTGGCCCTGCTCCACCTAGTGAAGCCCACTGCTGCTCCTCCTGAAGGCCAGTCAGGGCCACGCAACTGGACCCCTGTCCAGCAGGAGGAGCTGCAACTGCAGGCTCTGGCCACTCTGGCCACCGTGGCTCCACTGATGCTGGATGACTATATGATCTGCCAGGGAAACACCTGCCTTCTGCTGCTGCTGGAGTGGTGCACTGAgcgagATGCCTACTTTGGACAGGGCCATAGTTTCCATGGCACTGGAGGGAGGGGCAGTAAGAAGGCTCAGATGCGTTACTGTGTGAGGCTGCTGAGATCCATGGTGTCTCTAGGCAACGAAGCAATCAACCAGGACCTCTTTGATCAAGGAGCCATCAGCCAGCTGCTTGTGATCATTATGCAGATGGAGGGGAGTCCTGAGGAGGAGGACGTTATTACCTTGGAGATCAAGGCTGACATTCAGCTGATCCTGTCAGCACTCTGCGAGAACAATCCACACAGAAAGGAATTGTTTGGATCGGAGGGAGTTGAGATGACGGTGCATTTCCTCAAGATGAGCACTGAGAAGTTCTACAGTGGCCTGGGACACAACAAACTCATCCTCTCCACCGTGGATTGTGTCTGGTCCTGTATTGTTGGATGCTACACCACAGAAGATGTGTTTTTGGAAAAAGAAGGCATTTTCCTTCTGCTTGACTTGCTTCATTCGAGCCCTAGGAACATGCAGAACGTGGTCCTTGGAACCCTGCTGGAGCTGTGTGACAACCCCAAGACGATGTCTCACATCCTGGCCTGGCGAGGGCAGAAGAGCCTGACCACCCCGGGGCTACTCTTACAGCTCTGGAGGCAGGAAGAGGCAGAGCTGGGGGTGAGCAGAGACCTCTATGGAAGGATCTCAGATCCCAAGAAGCCTATTCTGTGTTATTACCAAGAGGAGGAGGATTCCCAGGTATCACTGCCTGCTAACAGGCCTAGTGCTGCAGTGATGGATGTGTCTGAGAACCTTCGCTCCAAGATCTACTCTGTCTTCTGTAAACTTGGTTTTGAAGCCCTGCCTGGATTGTCAACGGAAGATTATATCACCCTAAGCATTGTCACCAGATATCTGGACTTTAAGCTATCCCAATAGGTTGGCGAGGTGTGGGATGAGATCTCCAAAGAGTTGAGTCTGGAGGGAGTGAGACCAGTCACCCCTGACGAAGAGGCCCTGGATACCATTGCTAAGATGACAGAGGACACAGCCAGGAGAGTCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2638605 lncRNA upstream 4511 21218207 ~ 21218410 (+) True G2306664
TU2638587 lncRNA upstream 8055 21214620 ~ 21214866 (+) True G2306646
TU2638596 lncRNA upstream 17216 21203145 ~ 21205705 (+) True ccdc127b
TU2638536 lncRNA upstream 121319 21101312 ~ 21101602 (+) True G2306598
TU2638468 lncRNA upstream 184252 21038276 ~ 21038669 (+) True G2306530
TU2638609 lncRNA downstream 3520 21233278 ~ 21238489 (+) False LOC110488070
TU2638610 lncRNA downstream 3520 21233278 ~ 21238489 (+) False LOC110488070
TU2638611 lncRNA downstream 3520 21233278 ~ 21238489 (+) True LOC110488070
TU2638640 lncRNA downstream 25082 21254840 ~ 21255203 (+) True G2306692
TU2638655 lncRNA downstream 94554 21324312 ~ 21324772 (+) True G2306706
XM_021560045.2 mRNA upstream 17843 21203092 ~ 21205078 (+) False ccdc127b
XR_005041417.1 mRNA upstream 503829 20715069 ~ 20719092 (+) False LOC118946542
XR_005041341.1 mRNA upstream 1221547 19994142 ~ 20001374 (+) True LOC118946489
XM_036971806.1 mRNA upstream 1438482 19760234 ~ 19784439 (+) True ptk2aa
XR_002468341.2 mRNA downstream 3585 21233343 ~ 21238396 (+) False LOC110488070
XM_036970584.1 mRNA downstream 30501 21260259 ~ 21273307 (+) False slc9a1b
XM_021559485.2 mRNA downstream 30502 21260260 ~ 21273391 (+) False slc9a1b
XM_036970583.1 mRNA downstream 30502 21260260 ~ 21274297 (+) False slc9a1b
NM_001124695.1 mRNA downstream 30862 21260620 ~ 21273555 (+) True slc9a1b
TU2638087 other upstream 408623 20813189 ~ 20814298 (+) True G2306173
TU2638086 other upstream 408732 20813189 ~ 20814189 (+) False G2306173
TU2637856 other upstream 669237 20553333 ~ 20553684 (+) True G2305956
TU2636452 other upstream 1392960 19828217 ~ 19829961 (+) True G2304678
TU2636184 other upstream 1863132 19354211 ~ 19359789 (+) True dgat1a
TU2638628 other downstream 77674 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other downstream 77800 21307558 ~ 21311807 (+) True LOC110488072
TU2638636 other downstream 90865 21320623 ~ 21323896 (+) True G2306688
TU2638805 other downstream 357330 21587088 ~ 21587434 (+) True G2306825
TU2639980 other downstream 1176259 22406017 ~ 22416292 (+) True c32h5orf49

Expression Profile