RNA id: XM_021560050.2


Basic Information

Item Value
RNA id XM_021560050.2
length 3432
RNA type mRNA
GC content 0.47
exon number 23
gene id LOC110488068
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21222921 ~ 21231008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACCCCACTTCCGGTGTGTCAGAACGGGAAAAGTAGGCGTTTCGAGATGTGGTATTTTCTGTTTGTGGTAGTAGGGAGATAACCATAGTAACGGATACAAGCGCACATAGGTAGGTCTGAGGCCAACACAGAAGTCGGTGTTTTTGTGAGGCATCGACTGTAGTTATTTTCTTCCATGTATTTGTAATATTTGTTATGTCAACTAACTgaaacatttcagttgtacaCGCGGAACTCTGTAAAGCAGGTATTTTTTTGCACAAACGCGTTTGCAATGCTTGCATCGGAGGCTGCAATGACTAAAAGTTATTTGACAACTTCAACTGGATCGAAAGCCAAAGTGCATCGAAGAAAACATGCGATCCCAGTTATCAAACATATAGCAAAAGACAATGATCAAGAGAAACAGGAGGTTCTCACTAAACCTATTGAACTCAGTCGTGTGATACATTTTCTTGAGGATCCTTTAGCAGCTActttgaaagagagacagattttTGCTTTGAAGAAAGTAGTGAAGAGATGTCAAAAAGGCTTTCTTTTGAAAGAGCTGGCAGATGTTTTTAAGATTTTATATATCTGTGCTGAGAAGTCCAAAGATCATCCTGAATATACTTCAGTGCTATGTGACTTACTGAAGATTTGTCGGCTTCCTTTTCTAAAGGAAAAGACCTCTGATGAAGTGACCTATGCACAGACTGTCAAAGAATCATTCTCTCAGATGGGGTTCCTGATGAGGGTGCCAAACGCTGAAGTGAGGAACCAAATCTGCCACTCTATTATATCCGTGTACAGCTCTGTGACATCAAAACACAGTGTGGATGGTATGGACAGTCTTTCAAAGCCTGCAGCTGCCTCAAAGCCAGCTGTTGCCTCTCACAGATTCTCTAAACAGTCAATGAGACTCCACCCTACCAGCCTAGGCTACAGGGTGCAGCTGTTGGAGCAGAGTGGGCTGGCTGAGACTCTGGTCCTGTCCATGgccctcctggagaaccagcctGCAGTCAAGCTCCAGGTCCTACAGACTCTTCAGATGCTCTCCAGCTCATCTGATGTGAACTGTAGCCTAATATTAAAGGCACAGGGGGCACAGCAGATCTGTTTCCATATGAATGAGCCAGACCCTTCAGGGCAAGTCCTGTTCCGCTCCTCGGAGATCCTATGGAACTTGCTGGAGAGAGGTTGCAAAGAGGAGGTTACAGCTCAATTGAGCAACATGGACTGTATTATGGCTCTGAAAGAGGCATTTTTGCACCAGCTGCTGAATGGCTTTCGACATTACGACTTCCAACTCAGGAATGATCTACTGGTGATCACAACTCTCATAGCTGAAAACCCCAAATCTCCACTCATTGAGAGTTTATTTGCCAAGCAACTCATTCTTTTTGTTACATTTCCAGAACTCAAGAGTCACAACCCGTTGGTCCGCAACCTCAAGCTTTCCTATAACAATGAAGATTTTGAGATGAAAAGGTTGCTACTAAATCTGGTTGTTGTCATGTCAAAAGACTTATCTGCTCTGCAGCTGTTCAAAGAGGGCCATGTTGTCCTGGCCCTGCTCCACCTAGTGAAGCCCACTGCTGCTCCTCCTGAAGGCCAGTCAGGGCCACGCAACTGGACCCCTGTCCAGCAGGAGGAGCTGCAACTGCAGGCTCTGGCCACTCTGGCCACCGTGGCTCCACTGATGCTGGATGACTATATGATCTGCCAGGGAAACACCTGCCTTCTGCTGCTGCTGGAGTGGTGCACTGAgcgagATGCCTACTTTGGACAGGGCCATAGTTTCCATGGCACTGGAGGGAGGGGCAGTAAGAAGGCTCAGATGCGTTACTGTGTGAGGCTGCTGAGATCCATGGTGTCTCTAGGCAACGAAGCAATCAACCAGGACCTCTTTGATCAAGGAGCCATCAGCCAGCTGCTTGTGATCATTATGCAGATGGAGGGGAGTCCTGAGGAGGAGGACGTTATTACCTTGGAGATCAAGGCTGACATTCAGCTGATCCTGTCAGCACTCTGCGAGAACAATCCACACAGAAAGGAATTGTTTGGATCGGAGGGAGTTGAGATGACGGTGCATTTCCTCAAGATGAGCACTGAGAAGTTCTACAGTGGCCTGGGACACAACAAACTCATCCTCTCCACCGTGGATTGTGTCTGGTCCTGTATTGTTGGATGCTACACCACAGAAGATGTGTTTTTGGAAAAAGAAGGCATTTTCCTTCTGCTTGACTTGCTTCATTCGAGCCCTAGGAACATGCAGAACGTGGTCCTTGGAACCCTGCTGGAGCTGTGTGACAACCCCAAGACGATGTCTCACATCCTGGCCTGGCGAGGGCAGAAGAGCCTGACCACCCCGGGGCTACTCTTACAGCTCTGGAGGCAGGAAGAGGCAGAGCTGGGGGTGAGCAGAGACCTCTATGGAAGGATCTCAGATCCCAAGAAGCCTATTCTGTGTTATTACCAAGAGGAGGAGGATTCCCAGGTATCACTGCCTGCTAACAGGCCTAGTGCTGCAGTGATGGATGTGTCTGAGAACCTTCGCTCCAAGATCTACTCTGTCTTCTGTAAACTTGGTTTTGAAGCCCTGCCTGGATTGTCAACGGAAGATTATATCACCCTAAGCATTGTCACCAGATATCTGGACTTTAAGGTTGGCGAGGTGTGGGATGAGATCTCCAAAGAGTTGAGTCTGGAGGGAGTGAGACCAGTCACCCCTGACGAAGAGGCCCTGGATACCATTGCTAAGATGACAGAGGACACAGCCAGGAGAGTCATCACACAGCAGAGCAGCATGCTGGAGCAACGGGACAAGGAGGACGTCAGTGAGGAGAAACGCATGTATACAGAGATACGTTCCAACTGGAAACAGCAGGAGCTTACAGCCCAGTCTTGGGAGCATTTTGTGGCAAAGACATCAAACTACAAGATTTTAAAGGAGACAAAAGAGCATCAGGAGAGATCTATTGACTCTTCCAGACCTAAACCAAAGCATAAGGAAGCTATATTCCATCCTACACAGATTCATGGCTTACAAATTACAaaatTCTGTGGGCGGGTGATGACTGTAGAGAGCACTCCAGCCCACCTGACAGGAGGGCCCCTGGCCAATACAGAGCTGGCACTGGAGAGGGTGCCCATCCAGGGTGGAGCCCTGAGGAAACTCCCCACTGCCACTGAGGACCCAGAGTATTTCAACACAGTATCAGTCAAATAAATACCCCACCTCCTCTTATAGCTTTGCTCAGTGTTTGTTCACTATTTACTACAGGTCTCCATGTACAATTTGGTGTGTTAGCTTCAGAGTGAACATACAGACAGGAATTCATCAATCCAGCATGAACAACCAAAATTAGACTACTAGTATCTACTAGGAACAGATATTAATGGATGGATTAAACAGATTTGAAATTATTAAAATTGTGCTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2638605 lncRNA upstream 4511 21218207 ~ 21218410 (+) True G2306664
TU2638587 lncRNA upstream 8055 21214620 ~ 21214866 (+) True G2306646
TU2638596 lncRNA upstream 17216 21203145 ~ 21205705 (+) True ccdc127b
TU2638536 lncRNA upstream 121319 21101312 ~ 21101602 (+) True G2306598
TU2638468 lncRNA upstream 184252 21038276 ~ 21038669 (+) True G2306530
TU2638609 lncRNA downstream 2270 21233278 ~ 21238489 (+) False LOC110488070
TU2638610 lncRNA downstream 2270 21233278 ~ 21238489 (+) False LOC110488070
TU2638611 lncRNA downstream 2270 21233278 ~ 21238489 (+) True LOC110488070
TU2638640 lncRNA downstream 23832 21254840 ~ 21255203 (+) True G2306692
TU2638655 lncRNA downstream 93304 21324312 ~ 21324772 (+) True G2306706
XM_021560045.2 mRNA upstream 17843 21203092 ~ 21205078 (+) False ccdc127b
XR_005041417.1 mRNA upstream 503829 20715069 ~ 20719092 (+) False LOC118946542
XR_005041341.1 mRNA upstream 1221547 19994142 ~ 20001374 (+) True LOC118946489
XM_036971807.1 mRNA upstream 1442608 19777269 ~ 19780313 (+) False LOC118946534
XR_002468341.2 mRNA downstream 2335 21233343 ~ 21238396 (+) False LOC110488070
XM_036970584.1 mRNA downstream 29251 21260259 ~ 21273307 (+) False slc9a1b
XM_021559485.2 mRNA downstream 29252 21260260 ~ 21273391 (+) False slc9a1b
XM_036970583.1 mRNA downstream 29252 21260260 ~ 21274297 (+) False slc9a1b
NM_001124695.1 mRNA downstream 29612 21260620 ~ 21273555 (+) True slc9a1b
TU2638087 other upstream 408623 20813189 ~ 20814298 (+) True G2306173
TU2638086 other upstream 408732 20813189 ~ 20814189 (+) False G2306173
TU2637856 other upstream 669237 20553333 ~ 20553684 (+) True G2305956
TU2636452 other upstream 1392960 19828217 ~ 19829961 (+) True G2304678
TU2636184 other upstream 1863132 19354211 ~ 19359789 (+) True dgat1a
TU2638628 other downstream 76424 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other downstream 76550 21307558 ~ 21311807 (+) True LOC110488072
TU2638636 other downstream 89615 21320623 ~ 21323896 (+) True G2306688
TU2638805 other downstream 356080 21587088 ~ 21587434 (+) True G2306825
TU2639980 other downstream 1175009 22406017 ~ 22416292 (+) True c32h5orf49

Expression Profile