RNA id: XR_002468341.2



Basic Information


Item Value
RNA id XR_002468341.2
length 1205
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110488070
representative False

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21233278 ~ 21238489 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGTAAGGCGAgagagtgtgtctatgtgtgtgtgtgtgtgtgtctgtctgtgcaagactgtgtctgtgtgttcagcTTGAGTCTATTGAGCCAATTGGATGGGACTGGGGTTTACAAAGACCAGGGGCACATAGGAGCTTCCTCAGTATCACAGGCTTTCACTTTCTTCTAGTGTTTCGGATGGTGTCTGGGCTGATGCTGCTGCAGGGCTTGGTGAAGGTGCTGGACTAATCTGAGAACTCACAGTTGAAGACATGTTCATTAGACTGGGACGCCTGACCCCTGGATACTTCCGTCTCCTCCAGAGACAGGTCTCAGGTGAAGTCCAGATACAGCCGCAGAAAGGATTCATCAACCAGATCGCCATGATGATGGCCATGGTGGGCATGAGTGTGTCCTTCTACAGCGCCCGGCGGATGGCGGAGAAGTTCCATCTGAAAGAGAATGCTCCCTGAACAGTTGGACAGTGTGGCCCCTCAACTGGaccagagagatgggggagagagatgaagagaatcAGAGTAGGCTGCAGTGCTGCACTCCATCACCTTGCATTGCAGCGTTTGGCACCTTCACTAGAATTCAGGCCTACTCAAAGATGCCATGCCAAGATGGTTCTGTGGGCtgagtgtttgttgttgttgttcgaGAGAATGTCTGTGTTTGATGGAAGAGGATGGGTATCAGGAGCGTTTTGTCTTGTGAGACCATGCAGTCTTTAATAAACAACTGCTGGGTTTGACATACGTTTATCTTTGTATTATGATAACGGGAAAATGTAAGTGTACTGTGGGGAAATGGAAATGTGAATTACCAGTACTAATGCCCAATAGATTAAAATGACCTAACAACATTTTTAACTAAAGACATTTTTTGGAAGATATGAGGTGATCTACACATATCTGcttatttgaaagatttcaacaTGTAGGCCTAGCATACTTACATAGGCTCCATACTAGAATGTCTTTGAACATAGCATGAATGCACATCACAAATGCGGGACCCCAGTAAGCGTTTAGTATTTGCTTTAGCGCTTTATCAGTTGAACATGGATGCCATGATAATACTGTAGCTCTGTGGTTCTGACAGAATCGGTGGTCTCCTCAACGTATGCCACTTCCAAACTGACTCTCAATGACATTTATATGTATATTTTATTAACAAGTATTTTTAATAGTTTACATTTTTAAATACCAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2638605 lncRNA upstream 14933 21218207 ~ 21218410 (+) True G2306664
TU2638587 lncRNA upstream 18477 21214620 ~ 21214866 (+) True G2306646
TU2638596 lncRNA upstream 27638 21203145 ~ 21205705 (+) True ccdc127b
TU2638536 lncRNA upstream 131741 21101312 ~ 21101602 (+) True G2306598
TU2638468 lncRNA upstream 194674 21038276 ~ 21038669 (+) True G2306530
TU2638640 lncRNA downstream 16444 21254840 ~ 21255203 (+) True G2306692
TU2638655 lncRNA downstream 85916 21324312 ~ 21324772 (+) True G2306706
TU2638637 lncRNA downstream 97539 21335935 ~ 21337707 (+) True LOC110489444
TU2638635 lncRNA downstream 115950 21354346 ~ 21354926 (+) True G2306687
TU2638633 lncRNA downstream 116662 21355058 ~ 21356436 (+) True G2306685
XM_021560050.2 mRNA upstream 2335 21222921 ~ 21231008 (+) False LOC110488068
XM_021560051.2 mRNA upstream 2335 21222921 ~ 21231008 (+) True LOC110488068
XM_036971420.1 mRNA upstream 3585 21222921 ~ 21229758 (+) False LOC110488068
XM_021560045.2 mRNA upstream 28265 21203092 ~ 21205078 (+) False ccdc127b
XR_005041417.1 mRNA upstream 514251 20715069 ~ 20719092 (+) False LOC118946542
XM_036970584.1 mRNA downstream 21863 21260259 ~ 21273307 (+) False slc9a1b
XM_021559485.2 mRNA downstream 21864 21260260 ~ 21273391 (+) False slc9a1b
XM_036970583.1 mRNA downstream 21864 21260260 ~ 21274297 (+) False slc9a1b
NM_001124695.1 mRNA downstream 22224 21260620 ~ 21273555 (+) True slc9a1b
XM_021560052.2 mRNA downstream 39169 21277565 ~ 21307347 (+) False LOC110488071
TU2638087 other upstream 419045 20813189 ~ 20814298 (+) True G2306173
TU2638086 other upstream 419154 20813189 ~ 20814189 (+) False G2306173
TU2637856 other upstream 679659 20553333 ~ 20553684 (+) True G2305956
TU2636452 other upstream 1403382 19828217 ~ 19829961 (+) True G2304678
TU2636184 other upstream 1873554 19354211 ~ 19359789 (+) True dgat1a
TU2638628 other downstream 69036 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other downstream 69162 21307558 ~ 21311807 (+) True LOC110488072
TU2638636 other downstream 82227 21320623 ~ 21323896 (+) True G2306688
TU2638805 other downstream 348692 21587088 ~ 21587434 (+) True G2306825
TU2639980 other downstream 1167621 22406017 ~ 22416292 (+) True c32h5orf49

Expression Profile