RNA id: XM_036970583.1


Basic Information

Item Value
RNA id XM_036970583.1
length 3575
RNA type mRNA
GC content 0.47
exon number 13
gene id slc9a1b
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21260259 ~ 21274297 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTATGAACCATTGAGGTGTGATTGCAGCCAATGTAACCCAAATAGAGGACATGAGGCACAAACGGGAGTTGATATTCCGCCTGATACATAACAGCTGCGCCTTTCACATTAGTGAACACTTCAACGCTTGACGACACTGCGCAAACATTTAAGGAGGAATACAATCATCATCAAAGCCGGCGTTAACTCTCATTCATCAGGGAGCTTTTTACTGGTGTTTCTTTACATTTACCCGCGATATTCTATGCATGATGTCCGTACATGCACTGCGTAAAAGTGCAAGCTCCAGctgcagtaacagtaacatggcACCAGCATCACTTCCCCTTACATCTTCATTTCTGCCTGCATCTCCGACGCATTGATGGAGGATGACGATTTGGAGTAGCTAGCGGGATAAATCATTAACGTAATTGAAATGCCGGCATTCTCGTGTGCCTTTCCTGGCTGTCGCAGGGATCTCCTGGTAATAGTTTTAGTTGTGTTCGTGGGCATTGGATTACCTATTGAAGCCTCTGCCCCTGCATATCAATCGCATGGGACTGAAGGCTCACATTTAACTAATATAACAAATACTAAAAAGGCATTTCCTGTACTTGCCGTAAATTACGAACACGTACGAAAGCCTTTTGAGATCGCGCTATGGATCCTCCTCGCCTTATTGATGAAACTTGGTTTCCATCTGATCCCGCGTCTGTCTGCCGTGGTCCCAGAGAGCTGCCTGCTGATCGTGGTGGGGCTGCTAGTGGGGGGGCTCATCAAGGTGATTGGAGAAGAGCCCCCAGTACTGGACTCCCAGCTCTTCTTCCTGTGCCTCCTCCCTCCCATCATCCTTGATGCTGGCTACTTTCTGCCGATCCGGCCCTTCACAGAGAATGTGGGCACCATCTTGGTGTTTGCGGTGATAGGTACCCTGTGGAACGCCTTCTTTATGGGGGGCTTGCTGTACGCCTTGTGCCAGATCGAGAGCGTCGGTCTGAGCGGAGTTGACCTGCTGGCCTGCCTGCTCTTCGGCTCCATCGTGTCGGCCGTGGACCCCGTGGCCGTGCTGGCTGTGTTTGAGGAGATCCATATCAACGAGTTGGTTCACATCCTGGTGTTTGGGGAGTCCCTTCTCAATGATGCTGTCACAGTGGTTCTGTACAACCTGTTTGAGGAGTTCTCCAAAGTGGGGACGGTCACTGTATTGGATGTGTTCCTAGGCGTGGTGTGTTTCTTCGTGGTGTCCCTAGGAGGGGTCCTGGTGGGGGCCATATACGGCTTCTTGGCAGCCTTCACCTCTCGTTTCACCTCTCACACCCGCGTCATCGAACCCCTTTTCGTCTTCCTATACAGCTACATGGCCTACCTTTCCTCCGAGATGTTCCATCTCTCTGGTATCATGGCTTTGATAGCATGTGGGGTTGTGATGCGGCCCTATGTGGAGGCCAACATATCCCACAAGtcctacaccaccatcaagtACTTCCTGAAGATGTGGAGCAGCGTGAGCGAGACACTCATCTTCATCTTCCTGGGCGTCTCCACGGTGGCAGGGCCGCATGCCTGGAACTGGACCTTCGTCATCACCACCGTCATCCTCTGTCTGGTGTCACGAGTACTGGGTGTGATTGGCCTTACATTCATCATCAACAAATTCCGTATTGTCAAGTTGACCAAAAAGGACCAGTTCATTGTGGCCTACGGTGGCCTGCGAGGGGCCATAGCTTTCTCCCTGGGATACCTGCTGTCAAATAGTCACCAAATGAGGAACTTGTTCCTGACAGCAATCATCACTGTCATTTTCTTTACTGTGTTTGTGCAGGGTATGACAATCAGGCCCTTGGTTGAGCTACTTGctgtgaagaagaagaaggagagcaAGCCTTCCATCAACGAGGAGATTCACACAGAGTTCCTGGACCATCTCCTCACAGGAGTTGAGGGTGTCTGTGGCCATTATGGGCATTATCACTGGAAGGAGAAGCTTAACCGCTTCAACAAGACCTACGTGAAGAGGTGGCTTATAGCGGGCGAAAACTTTAAGGAGCCTGAGTTGATCGCCTTCTACCGCAAGATGGAGCTGAAGCAGGCTATTATGATGGTGGAGAGTGGCCAGCTGCCCTCAGTTCTGCCCTCCACCATCTCCATGCAGAACATCCAGCCCAGAGCGATTCCACGGGTCTCTAAGAAACGGGAGGAAGAGATCAGAAGGATCCTGAGGGCCAACCTGCAGAACAACAAGCAAAAAATGCGCAGCAGATCCTACAGCAGACACACGCTGTTTGACGCCGATGAGGAAGACAACGTGAGCGAGGTGCGCCTACGGAAGAcgaagatggagatggagaggaggATGAGCCACTACCTCACTGTTCCAGCCAACCGGGAGTCACCTAGGCCTGGAGTCAGGCGAGTCAGGTTTGAATCAGACAACCAGGTTTTCAGTGCTGACAGTTTCCCTACTGTCCACTTTGAGCAGCCTTCCCCTCCCAGCACACCTGACGCTGTCAgcctagaggaggaggaggaggaggaggtacccAAGAGGCCTAGCCTGAAAGCAGACATAGAAGGACCCAGGGGTAATGCGTCAGACAACCACCAGGGCGAGCTGGACTACCAGAGACTAGCACGCTGTCTAAGCGACCCCGGTCCCAATAAAGACAAGGAGGATGACGATCCCTTCATGTCCTGTTAAAGAACATCTTTTAAACTATAGCGCTTCAAATGAGGAGAATAATCGGATTCCACTATTTCAGAAGCTCCTTAATTCTCCTCTGGCACTTACTTGTATGAGATGGAGATTTTTCTATGGCAACATCTCAAAGTATCTCATGTATCgaaggacatttctaatttatCTCTGTGCCGTTGTTGTTGTATTTCTCATGTTTGGGTCCTTGTTCTTTGGTGTTTTTGATGTAATATAATGTGAATAATTTGCCAAAGGTTCACATAACAATTTTTCTTGAACCATTTTTCAATATCATGAAATCATGAGTCaagatttgttttgtgtttcagatattttttaaatgtttttttgttatgTAAAATCACGGCTTCCTTTTAGAGAGAGAAATGTAGGTGTTTGTCAGCACTTCTGTCTTAATACGTTTTCACATGATAGTGCTTCTCATTCACTTTATTCGCATGAATATTAAATATGTTTTCTCAGGGACTGCATCACAGGGTAGCTGGCCAACTACCCTTAGCAGCCAGAAAACACACTCCTGGTAACTATACAAATGCAATTTCCAGTATGTCTTTTGACTGGATAAAAGCCTTTTCATTGGAAGCAAGTAGCAAAATAGATTGCATATCACTCAAAGTAATCGCACTCATGCCTTGTCTCCACTGTATTTGGGTCTGAAGCTGTCAAAATCCATTTAGACTTGTGATTGTTTAAAAAAAGGAAGTTGCCAAGTTGAATAATTTTTATAAGAAAGACAATGCAGGCCTATTTGAAATGGGTTGAATTGTTAGCAGTTTGTACTGAGAGGTAAAACAATCTTTACAGATAATATGCATCAGAAATTAAGATGACTTCATGACTGAGTTTAACAATAAAGTGCTCATAAAATACAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2638640 lncRNA upstream 5057 21254840 ~ 21255203 (+) True G2306692
TU2638609 lncRNA upstream 21771 21233278 ~ 21238489 (+) False LOC110488070
TU2638610 lncRNA upstream 21771 21233278 ~ 21238489 (+) False LOC110488070
TU2638611 lncRNA upstream 21771 21233278 ~ 21238489 (+) True LOC110488070
TU2638605 lncRNA upstream 41850 21218207 ~ 21218410 (+) True G2306664
TU2638655 lncRNA downstream 50015 21324312 ~ 21324772 (+) True G2306706
TU2638637 lncRNA downstream 61638 21335935 ~ 21337707 (+) True LOC110489444
TU2638635 lncRNA downstream 80049 21354346 ~ 21354926 (+) True G2306687
TU2638633 lncRNA downstream 80761 21355058 ~ 21356436 (+) True G2306685
TU2638665 lncRNA downstream 82416 21356713 ~ 21356926 (+) True G2306716
XR_002468341.2 mRNA upstream 21864 21233343 ~ 21238396 (+) False LOC110488070
XM_021560050.2 mRNA upstream 29252 21222921 ~ 21231008 (+) False LOC110488068
XM_021560051.2 mRNA upstream 29252 21222921 ~ 21231008 (+) True LOC110488068
XM_036971420.1 mRNA upstream 30502 21222921 ~ 21229758 (+) False LOC110488068
XM_021560045.2 mRNA upstream 55182 21203092 ~ 21205078 (+) False ccdc127b
XM_021560052.2 mRNA downstream 3268 21277565 ~ 21307347 (+) False LOC110488071
XM_036970681.1 mRNA downstream 3268 21277565 ~ 21307347 (+) False LOC110488071
XR_005041281.1 mRNA downstream 3268 21277565 ~ 21307347 (+) True LOC110488071
XM_021560053.2 mRNA downstream 33208 21307505 ~ 21310195 (+) False LOC110488072
XM_021560054.2 mRNA downstream 38212 21312509 ~ 21320395 (+) False LOC110488073
TU2638087 other upstream 445962 20813189 ~ 20814298 (+) True G2306173
TU2638086 other upstream 446071 20813189 ~ 20814189 (+) False G2306173
TU2637856 other upstream 706576 20553333 ~ 20553684 (+) True G2305956
TU2636452 other upstream 1430299 19828217 ~ 19829961 (+) True G2304678
TU2636184 other upstream 1900471 19354211 ~ 19359789 (+) True dgat1a
TU2638628 other downstream 33135 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other downstream 33261 21307558 ~ 21311807 (+) True LOC110488072
TU2638636 other downstream 46326 21320623 ~ 21323896 (+) True G2306688
TU2638805 other downstream 312791 21587088 ~ 21587434 (+) True G2306825
TU2639980 other downstream 1131720 22406017 ~ 22416292 (+) True c32h5orf49

Expression Profile