RNA id: XR_005041281.1


Basic Information

Item Value
RNA id XR_005041281.1
length 3008
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC110488071
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21277565 ~ 21307347 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agGTACTGTACAGTGTGTCACAATTCTAAACATGCTTGAGTGAACGAGACCTGATTAAGAATGGCTCGTGCGTTCATAAAATCGCCATACTCTGGGAAGATTTAGCGTTGGAATTCTACTCAAACTAAATAagttaaattattttatttttgttgtaaCGGCCACGAGGGAAAATTTAAGGAGACAACAATTGACTTTATCAACAATGTAGCTGTTGTGTTGGCAAACTGAGACGAGATGATTTTCAAAACGCTCGCAGGTAAAACTTCGTTCGTGGGGCTTCGTTTACCGCAGACATTTCTATTCTTACTGTTTCTCGGAAGTCTGGGATTTGGAGCTTTGTTCTTTTTGCCTGAAACATCTCGTTTGAAACGTATTTTTCAACATAATTCGGACAACTCGGCAGTTATCACCGACTCGATGAATGGACAAAGTGCACAGCCCAGCTCACCCATTGGGCTCATTGGAGCCGCTCGGTTCGATATTGGAGTGCCACGTATACAATCACAACTCTCATCTTCAAATGGAAAACAGACAAATAATAACAAGGAAAGTAATCAAAGAACAGTTTCAATGGAACATACGTCTGAAGGTGACGCTGCCGACGACAAGGTGCATACAAGGGGCGTGGTGGTATCGAGTCGCGCGCGCTCACCTGTGAGAGTGAAGTTGAGGAATTGTATGCTGAAACCGCCATATGGCGCAAATTATGGAAAACCTAGTGATCCTGAATCTCTGCAGCGTCGGGAGAAAGTCAAAGAGatGATGAAGTTTGCTTGGGACAACTATAAGCGCTACGCATGGGGGGAGAATGAGCTGCGACCACTCTCCAGGAATGGCAATGATGGCAGGACATTTGGTGGGTTAAGAGGTGCCTCTATCGTGGACTCTCTTGATACCCTCTACATTATGGGGCTTGGTGAAGAGTACCAGGAGGCCAAGGAGTGGGTGGAGAACAACCTGAACCTCAATGTAGGTGGAGAGGCATCTCTGTTTGAAGTGAATATCCGCTACGTGGGTGGCCTGCTGTCTGCCTACTACCTaacaggagaggagGTGTTTAAAAGGAAAGTGGTGGAGCTGGGGAAAAATCTGTTACCTGCCTTCAACACTCCCACAGGCATACCACATGGAGTTGTCAACCTGGCCGGTGATTCCAGGAGGTGGTCCGGAGGGGATTTGGGGAGGAGCAGTGTTCTAGCAGAGTTTGGAACCCTGCATCTGGAGTTTGTTCATCTGTCAGAACTCACCAATGATCCCATTTATACCGAGAAGGTTATGAATATTAGGAAACACCTGAACCAGCTGGACAAGCCACGTGGCCTCTACCCAAACGCTCTCAACCCAGTCAGTGGGAATTGGGAACAGCATTATGTCTCCATTGGGGCCCTTGGTGACAGTTTCTACGAGTATCTAATAAAATCCTACCTGATGTCAGACAGGACAGATGAAGTTGCTAAAAGAATGTACTATGCTGCACTGGAGGCCATAGAGAATAACCTAGTCCAGAGGTCTCCTGGGGGGCTGATCTACGTGGCTGAGTGGAGAGGGGGTATCCTGGACCACAGGATGGGTCACCTGGCCTGCTTCTCTGGAGGGATGATTGGGATCGGGGCTGAACACGGCAGTCCAGAGACCAGGCAGCACCAACTGGACCTGGCTGCTAACATCACCCATACCTGCCATGAGTCCTACAGGCGTACACGCTCTGGAGCAACACTGTCGACTTGCCACAGGGTTCTCTGGTATCATTGATGTCTACGGCCATATAATCCAACACGACAATTTACAGCAGAGTTTCTTTCTGGCAGAAACACTCAAGTATCTGTACCTGCTGTTCTCTGACGACGATCTCCTGCCTCTGAAGGACTGGGTGTTTAACACAGAAGCACACCCTCTACCTGTCATCCCCAGGAACTGCTCTCAGGAGAGAGGACACAGACCCAATTGGACTCATTGACAGGCTTATAGGGCTCCTTTGAAATGGACCATATATGGTGTATGTTCATTGTCAGGCTTAGCTCCAGTGTTTGGCCCAAACATTTAGCCTTTTATGTTTTCATCTCTGAGGCCTGGTCTCAAAAAGCCCTAAGAAATGATTGGGGACCCCCTTTCTGGCCCTAGTCACTTTGATTAAACTGCAGGAGATGGATGGTCAGTGAGACACATATCTCTGTGGATACTGTTGAACTGATTTTGTGAAAGCTGTTGTTGTTTCTGTGAATCATCAGAAACCAACAATGAGTATATATATCTACTTCTTTGCCTCTGTGAGGGAAATTCCCATATCACAGGGAATGAGctgaacatcagctgtctgagtgTCAATATTTATTTGTGATACGTCCATTGTGCATTAAATCTGTCTGCTATgataaaaaatattgttttttcaGTGTAGGATTTTCTGTCCATGCCATTTAATTTTATTATCAGATAATTTCACtaattgtaagtcactctggaaagTGTCTGGTAAAGGACTAAAATATGAATGTAAATATTTCTGATGGATTTCAGCACTTCTCTGACTCACGATGCAAAACACTCCTCATCGATCAATTTTTATCCTGAACACCATCCATGGCTTGGAAATTGATTTATAGAAAGCTGCAGTCCCAGGAGAAAGAGGGAAATTGTTCATTAGGTCCAAAAAGTGAACATAGAGCTTAGTGAAAATGATTACATGCTCACAACTACCCTCTTACTTTCTCTACATGTGCACTATAAATTAGCTTACCCTTCATTACttaaaatgaatttaaaaaataattcccTGATGGCTCAGTTGATTACAAATCTGAGACTTTCATAATCAATAGTAATATATTAATTTCTGTAATATTAAGATAGGCTACTGATTTTTAAATAGTATGTTATATATGCTTTATTTGATAGATGGGAAATAGGGAGATATATTAAAGGAAGACAAAATGTGTAGATTCAGGAATCCAAACCTGGTGTCATTGCATATCTGCAAAGAGCCATGAATGTTTCCACTCAACTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2638640 lncRNA upstream 22362 21254840 ~ 21255203 (+) True G2306692
TU2638609 lncRNA upstream 39076 21233278 ~ 21238489 (+) False LOC110488070
TU2638610 lncRNA upstream 39076 21233278 ~ 21238489 (+) False LOC110488070
TU2638611 lncRNA upstream 39076 21233278 ~ 21238489 (+) True LOC110488070
TU2638605 lncRNA upstream 59155 21218207 ~ 21218410 (+) True G2306664
TU2638655 lncRNA downstream 16965 21324312 ~ 21324772 (+) True G2306706
TU2638637 lncRNA downstream 28588 21335935 ~ 21337707 (+) True LOC110489444
TU2638635 lncRNA downstream 46999 21354346 ~ 21354926 (+) True G2306687
TU2638633 lncRNA downstream 47711 21355058 ~ 21356436 (+) True G2306685
TU2638665 lncRNA downstream 49366 21356713 ~ 21356926 (+) True G2306716
XM_036970583.1 mRNA upstream 3268 21260260 ~ 21274297 (+) False slc9a1b
NM_001124695.1 mRNA upstream 4010 21260620 ~ 21273555 (+) True slc9a1b
XM_021559485.2 mRNA upstream 4174 21260260 ~ 21273391 (+) False slc9a1b
XM_036970584.1 mRNA upstream 4258 21260259 ~ 21273307 (+) False slc9a1b
XR_002468341.2 mRNA upstream 39169 21233343 ~ 21238396 (+) False LOC110488070
XM_021560053.2 mRNA downstream 158 21307505 ~ 21310195 (+) False LOC110488072
XM_021560054.2 mRNA downstream 5162 21312509 ~ 21320395 (+) False LOC110488073
XR_005041324.1 mRNA downstream 5169 21312516 ~ 21318462 (+) False LOC110488073
XM_021560055.2 mRNA downstream 5169 21312516 ~ 21320395 (+) False LOC110488073
XM_021560058.2 mRNA downstream 5169 21312516 ~ 21320395 (+) False LOC110488073
TU2638087 other upstream 463267 20813189 ~ 20814298 (+) True G2306173
TU2638086 other upstream 463376 20813189 ~ 20814189 (+) False G2306173
TU2637856 other upstream 723881 20553333 ~ 20553684 (+) True G2305956
TU2636452 other upstream 1447604 19828217 ~ 19829961 (+) True G2304678
TU2636184 other upstream 1917776 19354211 ~ 19359789 (+) True dgat1a
TU2638628 other downstream 85 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other downstream 211 21307558 ~ 21311807 (+) True LOC110488072
TU2638636 other downstream 13276 21320623 ~ 21323896 (+) True G2306688
TU2638805 other downstream 279741 21587088 ~ 21587434 (+) True G2306825
TU2639980 other downstream 1098670 22406017 ~ 22416292 (+) True c32h5orf49

Expression Profile