RNA id: TU2638628


Basic Information

Item Value
RNA id TU2638628
length 2490
RNA type TUCP
GC content 0.41
exon number 4
gene id LOC110488072
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21307432 ~ 21311878 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCCACAGGTCACTGTGGCATGAGGAAATACCTGAATAACAGGGAGACAAAATCCCTAACATGGCAACGAccagtgtgtgtgggggagaagagggaggagagtgcTTTCTTAATAAAGACACTTGTCACAACCATTGGACTTACCATCCATTTGCCTTTAGTTTGAACAACTGCCTGCTGCTAATCCCAATACTGAGCTGGACATGGCATTCAATGGAAAATGGAAAATCCACAGTCAGGAGAACCATGAAGAGTTTCTTAAAGCAATGGctgtccctgaGATGTTGATCAAAATGATCAAGGGTGTCAAGCCAACGACAATAATTGAGCAGAAGGGTGACGACTTCACCATCAGAGTTGAGACTCCCCTCCGTACTGTCACCAACTCATTCACTATAGGGAAGGAGGCAGAAATCACTGCCATGGATGGGAGAAAGTTTAAGTGTACTGCCAGACTGGAGGATGGGAAGCTCATCTGCGATACAGAGAAGTTCTCCCACATCAGAGAAATCAAAGGGGAGAACATGGTTGAGACTATCACTGCGGCCTCAACAACCCTCACCAGGATAAGCAAGAGAGTCTGATCTCTAAAGCCACAGAGACAAGGATTACATTttcaattaattaatttaaatgaCCTTTTATCTCAGGTAATATAATAGCTATAAAATATTACATTAAAATGACAAATGACTAGACATTGCATCTGCTCATTTTATGTCTAATTTGGACACATGCATTTTAAAAGCCCCAAAGCAAATGTACTTCCCTAACAAAACCAATACAAAATGGATGGCTTTTCCTGACACCTTGTGGTTATTGAATAATCTGCCATCATTGTAGTACTCAGCAACAAATGTAAACTTGTGGGATCAtgttttcacttcatcattaACTAGCAAATGTAGACATCAATGACCAGCTCATAATTGtgtttatttcatattttatctggattttatcatttttaaaaaagaaagaaaagaaaattcCTCAACAATTTCAATGAAtcacaatgggggaaaccaaAAACTCATGGTCACATCGTCATCTTCATCCTGTAAAGCAAGAACACAGACAAGAACAATTTAGAGGAGAGGCATTTTACATTATATCAATCAACATTTGTGACTGAATTCACACTGACTGTGtgtaagtcccaaatggcaccctattccctatgtagtgcactgcttttgaccagtgcccactGTGGATTTTCCATTGATAAAATGTTGAGTTAATAAAGTCACATACAAGGCAGCTCCAAAATTCAGgagtttcagcctagctcagtgctttctgtggtggaggtAATCTTCTCTTATTGCCccgtgattgactcagtgttctgtcactcatggggacactatgtcgCTGCAAGATCTACAGGGCGAGCTAGAAAGTTCAAGCCCCCTTGCATGCTGCCAaacatttacattagaagtgACCATCCCCCACAGATAAGATaacatcaaatcacgttatatctaccgtagctttttTTGGAcagatcatgtcaacatcatactttcaaaatcttagctatcTACCTAGACAATCAGTTATCATCATGAATCAcattgacaatctactggcaaatccttgtcatttgaaaataaattatagataaaacatatcggtgctcatcggccattggacttAAACATTGCACAACACGTTGGAAATCAACAGTGattggtttggaaggaatcaatgGCCAACTGATTGGGCtttggtcaccaaagccccatattctacccaccactgcgacctgtatgctctcgttggctggccctcgcttcatattcgtcgccaaacccactggctccaggtcatctacaagtcactgctgggtaaagccccaccttatctcagctcactggtcaccatagcagcacccacccgtagcacgctctccagcaggtatatttcactggtcacccccaaagccatttcctccctttggccgcctttccttacagttctctgctgccaatgactggaatgaattgcaaaaatcacttaagctggagactcatatcttcctcactaactttaagcaccagctgtcagagcagctcacagatcacttcacctgtacatagcccatctgtaaatagcccatctaactacctcatccccatagtgTCATTTTTTTttcgctcctttgcaccccagtatctctacttgcacattcatcttctgcacatctatcactcgagtgtttaattgctatattgtaattatttcaccactatggcctatttattgccttacctccattatcttacctcatttgcacacactgtatatagactttttttccccaattgtgttattgactgtatgtttgtttattccatgtgtaactctgtgtggttgtttgtgtcgcactgctttgctttatattcgccaggtcgcagttgtaactgaactttttctcaactagcctacctggttaaataaaggtttaataaaaaactgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2638640 lncRNA upstream 52229 21254840 ~ 21255203 (+) True G2306692
TU2638609 lncRNA upstream 68943 21233278 ~ 21238489 (+) False LOC110488070
TU2638610 lncRNA upstream 68943 21233278 ~ 21238489 (+) False LOC110488070
TU2638611 lncRNA upstream 68943 21233278 ~ 21238489 (+) True LOC110488070
TU2638605 lncRNA upstream 89022 21218207 ~ 21218410 (+) True G2306664
TU2638655 lncRNA downstream 12434 21324312 ~ 21324772 (+) True G2306706
TU2638637 lncRNA downstream 24057 21335935 ~ 21337707 (+) True LOC110489444
TU2638635 lncRNA downstream 42468 21354346 ~ 21354926 (+) True G2306687
TU2638633 lncRNA downstream 43180 21355058 ~ 21356436 (+) True G2306685
TU2638665 lncRNA downstream 44835 21356713 ~ 21356926 (+) True G2306716
XM_021560052.2 mRNA upstream 85 21277565 ~ 21307347 (+) False LOC110488071
XM_036970681.1 mRNA upstream 85 21277565 ~ 21307347 (+) False LOC110488071
XR_005041281.1 mRNA upstream 85 21277565 ~ 21307347 (+) True LOC110488071
XM_036970583.1 mRNA upstream 33135 21260260 ~ 21274297 (+) False slc9a1b
NM_001124695.1 mRNA upstream 33877 21260620 ~ 21273555 (+) True slc9a1b
XM_021560054.2 mRNA downstream 631 21312509 ~ 21320395 (+) False LOC110488073
XR_005041324.1 mRNA downstream 638 21312516 ~ 21318462 (+) False LOC110488073
XM_021560055.2 mRNA downstream 638 21312516 ~ 21320395 (+) False LOC110488073
XM_021560058.2 mRNA downstream 638 21312516 ~ 21320395 (+) False LOC110488073
XM_021560057.2 mRNA downstream 668 21312546 ~ 21320395 (+) True LOC110488073
TU2638087 other upstream 493134 20813189 ~ 20814298 (+) True G2306173
TU2638086 other upstream 493243 20813189 ~ 20814189 (+) False G2306173
TU2637856 other upstream 753748 20553333 ~ 20553684 (+) True G2305956
TU2636452 other upstream 1477471 19828217 ~ 19829961 (+) True G2304678
TU2636184 other upstream 1947643 19354211 ~ 19359789 (+) True dgat1a
TU2638636 other downstream 8745 21320623 ~ 21323896 (+) True G2306688
TU2638805 other downstream 275210 21587088 ~ 21587434 (+) True G2306825
TU2639980 other downstream 1094139 22406017 ~ 22416292 (+) True c32h5orf49
TU2640356 other downstream 1292442 22604320 ~ 22604721 (+) True G2308224
TU2641501 other downstream 2667472 23979350 ~ 23980779 (+) False LOC110488133

Expression Profile