RNA id: TCONS_00005456


Basic Information

Item Value
RNA id TCONS_00005456
length 463
RNA type processed_transcript
GC content 0.41
exon number 2
gene id XLOC_002957
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 37352480 ~ 37357303 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGTGTGCGCACACCTGCAGCTTCAAAATTACCATGTCTCAAAAAGGCGCACATTAATAGTgtgctctctctccctctcgtgcgcacacacacacacactgactcgtGCACAGATTATTCAAGCCTGTTCAGATAAGACAACTTCAGAACATCCAGTAACCAATCAAAAGGAACCATGATAAGTCTCAAAACGCTGTGTCTTTTGTACTTTGCTTTGCTCGTTGGACTGACACATGCTGAGGAATCAACCACATTAGCAAACAATGATACAAAAGCTCAGGATTCAACCACCATAAAAAACGAGGCTGCAAATCCTCAGGACGCAAACAACACAGCAACCAATGATACAATTACTCAAGGCAGAAATAACCCAGACCTCAATATTACAACAAATGATACTGAAAGAAAAAATAACCAAACTACTTCCAACCTTCAAACTGAGTACATATCACcattatcat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140604

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005454 lncRNA downstream 310248 37041078 ~ 37042232 (-) True XLOC_002955
TCONS_00005450 lncRNA downstream 531657 36819377 ~ 36820823 (-) True XLOC_002952
TCONS_00005446 lncRNA downstream 544820 36803816 ~ 36807660 (-) True XLOC_002951
TCONS_00005437 lncRNA downstream 669958 36679548 ~ 36682522 (-) False XLOC_002946
TCONS_00006100 lncRNA downstream 689869 36654197 ~ 36662611 (-) True XLOC_002945
TCONS_00005774 lncRNA upstream 60931 37418234 ~ 37476245 (-) True XLOC_002958
TCONS_00006101 lncRNA upstream 128109 37485412 ~ 37487685 (-) False XLOC_002959
TCONS_00005457 lncRNA upstream 128109 37485412 ~ 37487698 (-) False XLOC_002959
TCONS_00006102 lncRNA upstream 128109 37485412 ~ 37487721 (-) True XLOC_002959
TCONS_00006103 lncRNA upstream 372008 37729311 ~ 38025967 (-) False XLOC_002960
TCONS_00005455 mRNA downstream 14901 37334270 ~ 37337579 (-) True XLOC_002956
TCONS_00005452 mRNA downstream 277119 36950773 ~ 37075361 (-) False XLOC_002954
TCONS_00005453 mRNA downstream 279704 36953619 ~ 37072776 (-) True XLOC_002954
TCONS_00005451 mRNA downstream 424886 36828069 ~ 36927594 (-) True XLOC_002953
TCONS_00005447 mRNA downstream 526496 36811372 ~ 36825984 (-) False XLOC_002952
TCONS_00005458 mRNA upstream 128100 37485403 ~ 37487678 (-) False XLOC_002959
TCONS_00005464 mRNA upstream 810855 38168158 ~ 38243851 (-) False XLOC_002964
TCONS_00005465 mRNA upstream 813738 38171041 ~ 38243579 (-) True XLOC_002964
TCONS_00005466 mRNA upstream 899253 38256556 ~ 38316134 (-) False XLOC_002965
TCONS_00005469 mRNA upstream 1073056 38430359 ~ 38456382 (-) False XLOC_002967
TCONS_00005438 other downstream 669966 36681652 ~ 36682514 (-) True XLOC_002946
TCONS_00005427 other downstream 850149 36487618 ~ 36502331 (-) True XLOC_002940
TCONS_00005410 other downstream 1189186 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005408 other downstream 1698126 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005406 other downstream 1732031 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005460 other upstream 694349 38051652 ~ 38051766 (-) False XLOC_002962
TCONS_00005461 other upstream 714774 38072077 ~ 38072168 (-) True XLOC_002963
TCONS_00005463 other upstream 717009 38074312 ~ 38074391 (-) True XLOC_002962
TCONS_00005467 other upstream 933584 38290887 ~ 38316070 (-) False XLOC_002965
TCONS_00005468 other upstream 1018831 38376134 ~ 38376253 (-) True XLOC_002966

Expression Profile

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