RNA id: XM_021560055.2


Basic Information

Item Value
RNA id XM_021560055.2
length 2941
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110488073
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21312509 ~ 21320395 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGCGCATTCGGTTTTCCACATAGCTCCACAACTAGAAATACTTTTCTGTTAAACCCAAAACAGAGAGCGAAAATATTTGATGTAAAGCTGCATTCttgcttttatatatatatattttagcatGGCCAGATATTTGAGACCTCCAAATACATCTCTTTTCATCAGAAACATTTCCGATGAATCCAGGCCTGAGGATTTGCGCCGTGAGTTTGGTCGTTATGGGCCAGTAGTAGACGTCTACATTCCACTTGACTTCTATTCACGCCGACCAAGAGGATTTGCATATATTCAATATCCTTTCCCTTCTAAAAAAATGTAAAGGCATCCAGTTGTTGTGGAGCCTGGAGAAAGAGTAAGAATGTCCGGTGTAGAGTAGATCTAAAGACAAGCAGCAAAAGACCGCCAGGAtgcaagaaacagagagagggaaaggttgAAAGAGAATTTAAAGCTTGAAGAGACAAAGAGGAAAAAGAGGGGACGGAGTCCAGGCTTGGATATGTCATCaaaagaaagaggaaaagggaagAGATTAAAGGGCAAAGACAAGCAGGAAACCCAAGTTCTTCTGGGAGGCGATTAAAGAGCTTAAAGATCAAGATGAAAGTCAAAGTCAAGCATGTTTAAGGTAACAAACCTGAATTATTTTTTTGAAGATGTGCGCGATGCTGAAGATGCTCTTCACAACCTGGACAGGAAGTGGGTGTGTGGCCGACAGATTGAAATCCAGTTTGCGCAGGGAGACCGAAAGACACCCAATCAGATGAAAGGAAAGGAGGGGGGATCTTCGCGCAGCTCTTCGCGGCATGATGATCGAGATTATGATCGGGACAGTCGTCGTAGGCGCTCTCGCAGCCGTAGCTACCAAAGACGCAGGTCACGTAGCCCATCCTACGATCGCCGGCCCAGACGCTCTGAGAGTCCCAGAGACTCCCGTGGAAGGATGTACGGCGGTAGCGGAAGAAGCAGGAGTCCGGAAAACAACCGGCACCGACCCCACCCACGTGACCACCGACGACCCCCCCCTGGGCATTCCCCTCACAGCCAATCCCGCTCCCCTTCTCACTCCAGATCCAGGCCCAGGGCCCAGAGGGAGTCCAGAGGAAAGTCTCGTTCCCGCTCTAAGTCCCTGAGCCCACGGGGTGATGACTTCCACCCAGCACCCGGTGGCTACGATGCGTCCCGCTCGCATTCTCGCTCCCTCTCACGGTCCCGTTCTCGCTCCAGGTCCTGGACAGGGCGCAAGTCAGGGGGACACTAAAACATGTTTGTTGGATCCTTTTGACTGTAGTTGTGTCCAAAATGGCTTGCtggataattgaatgttcatggAACGGTTGTTGGTTGGTTTGTGAAAATTATCTTCCTTTGTAGTTTTTTGCTtccttttttttgttattttttaatgGATGAATAAATAGAAACACGATATCCTGTTTAAATCAGTCCCGGAAATGTCACCTTTTTTATAtccaatacactgagtgtacgaaaCATTAGGAATAGCTTCAATTCAAGCCTCAATTCATCTGGGCATGGACTTTACAAAGTGTTGatagcccatgttgactcaaatgcttctcacagttgtgtgaagttgtctggatgtcctttgaatggtggaccattcttgatacaaacaggaaacggttgtgtgaaaaacccagcaacattgcagttcttgatacattCAAACCGatgcgtctggcacctactaccataccccgttcaaaggcacttaaatcctcATCccttgaatggcacacatactcaatccatgtctcaattatcttgaggcttaaaagtccttctttaacctgtctcctccccttcatctacactgatttgaagtggatttacaagtgacatcaataagggatcatacctttcacctggtcagtctcgtggaaagagcaagtgttcctaatgttttgtgtatCAGTGTTATTCCTTTCAGAAGACAGGGCTAGAAGTACTGTATAGGCCAAGATCAAGTACCATCATTGTTTACCGTGAATGCGGGGAACATTGCTTTGAAAAGCGGATTGAATCCCTGCCCTTGTCGTTAAAATCCTTACCTTCACTTTCCTGTCAAGTACATTAGGCCCCAGCTTTCAGTTGGTATGCTTGAAGTGGAAGTTacctggggtgtaatcattagtccaaaaagGTTACTCCAAACGGAAAACGTTTGCAACGAAAACTTTAATTTGGTTCTGTTGGTTTCCTAGTGAAACATACCCGTGGCCTGTGAAAGAGCCACTACGGTAGTACCGTTCATTTTCTACCAACATTTGTTTACGATTTGTTCAGCGATAGACCGGCCCATGTTACATTGGCTTGTCCTATTTGATTTGATAAATTCTGGTAGCCATGTCAGTAGCCTCAAATATCAACTCTGAACGTTTCTAAATTTGATCAAATTGGCGATGGTTTGTACATGGCCTGCTGTATGTTTTGACATTTCAGGACCTTGATCCTTCACTTTGTTCTTGTGATGGCTTGTATTATTCTATATGCTTGTTTTTTCCTAAAACAACTCAAGAAGTGTAGTCTTCCTTCCAAATATGTCAGTTATGCTCTACTGTTTATGCAACAATTTTCTTGGAGAGTAATAAATGCTTGAAGTCATATTCCAGTCACCTTTTAAGCTAATTTATCACCTGATTTACTAGTTTGTTCATTGTTGTTCctctattactgcactgttggcgctaggaacataagcatttagtTACACCcacgataacatctgcaaaatgtgTGTACGTGACCAATCATATTTTATTTGATGTTCCCTCCTTGACGTTTGCAGTTGTTACTAAAAAAACTATTTTGCTCaatgtcatttatttttttaccctttAGTGTGTGTACTGTTTATAATTCAGATATCACTTTTCAACAGTATAAGTAAAGAAAAATCACTGGAGGAccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2638640 lncRNA upstream 57313 21254840 ~ 21255203 (+) True G2306692
TU2638609 lncRNA upstream 74027 21233278 ~ 21238489 (+) False LOC110488070
TU2638610 lncRNA upstream 74027 21233278 ~ 21238489 (+) False LOC110488070
TU2638611 lncRNA upstream 74027 21233278 ~ 21238489 (+) True LOC110488070
TU2638605 lncRNA upstream 94106 21218207 ~ 21218410 (+) True G2306664
TU2638655 lncRNA downstream 3917 21324312 ~ 21324772 (+) True G2306706
TU2638637 lncRNA downstream 15540 21335935 ~ 21337707 (+) True LOC110489444
TU2638635 lncRNA downstream 33951 21354346 ~ 21354926 (+) True G2306687
TU2638633 lncRNA downstream 34663 21355058 ~ 21356436 (+) True G2306685
TU2638665 lncRNA downstream 36318 21356713 ~ 21356926 (+) True G2306716
XM_021560053.2 mRNA upstream 2321 21307505 ~ 21310195 (+) False LOC110488072
XM_021560052.2 mRNA upstream 5169 21277565 ~ 21307347 (+) False LOC110488071
XM_036970681.1 mRNA upstream 5169 21277565 ~ 21307347 (+) False LOC110488071
XR_005041281.1 mRNA upstream 5169 21277565 ~ 21307347 (+) True LOC110488071
NM_001124695.1 mRNA upstream 38961 21260620 ~ 21273555 (+) True slc9a1b
NM_001195164.1 mRNA downstream 6526 21326921 ~ 21328722 (+) True LOC100499586
XM_021562150.2 mRNA downstream 13921 21334316 ~ 21337144 (+) False LOC110489444
XM_021560060.2 mRNA downstream 29556 21349951 ~ 21354244 (+) True LOC110488075
XM_021560064.2 mRNA downstream 37866 21358261 ~ 21388079 (+) True LOC110488077
XM_021560061.2 mRNA downstream 76925 21397320 ~ 21403121 (+) False stpg1
TU2638628 other upstream 638 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other upstream 709 21307558 ~ 21311807 (+) True LOC110488072
TU2638087 other upstream 498218 20813189 ~ 20814298 (+) True G2306173
TU2638086 other upstream 498327 20813189 ~ 20814189 (+) False G2306173
TU2637856 other upstream 758832 20553333 ~ 20553684 (+) True G2305956
TU2638636 other downstream 228 21320623 ~ 21323896 (+) True G2306688
TU2638805 other downstream 266693 21587088 ~ 21587434 (+) True G2306825
TU2639980 other downstream 1085622 22406017 ~ 22416292 (+) True c32h5orf49
TU2640356 other downstream 1283925 22604320 ~ 22604721 (+) True G2308224
TU2641501 other downstream 2658955 23979350 ~ 23980779 (+) False LOC110488133

Expression Profile