RNA id: TU2638637


Basic Information

Item Value
RNA id TU2638637
length 1773
lncRNA type read_through
GC content 0.38
exon number 1
gene id LOC110489444
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21334316 ~ 21337707 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCTGCTCTCCCAACCACCATATGTCATTGGCAAGTAACGCCACAAGCAGACGAGCTCCAGGCGACCTGCAGATCTAAGAGTTAGGCTATTAAACTCATTTCACAAGAAACTGTTACAGTGTTAGGCTATGCTCACATTCCCCCATCACTTCCATTGATTGTTAGCTTTTGATGGCTAAAATTAATTGAGGTTTGTAATGGCTGTTTAAAGATTTACAGTTTCTCTTGACCCACTACTTTCAGGGTGAAGCACTACctaacatcaagttgtaaaatagTGAACTACACCTTGAAGCAGGATAAAACTGTTTGAACGAAAAAGTATAGCCCCACCAGTGTCATGTTTACAGCATTGCTTTTTTGTCAAATATACTGTACCATAAAAAAAAGGCGCATTTTGTAGTAATGAACAAAGAGCATTTAGTCTGTGGTATTGCACTTTTTAAAATTCCGTTCAGAATTTGACTTTCCCCCAGTTGAAATTGGTGGCTGGAGTTCACTAGCTACCAAACTAATCAGGATATTTTGTCAGCGACATTACGATCCATTTTAGTATCAGTCCAATTAATAGTTTCTTTGCTCATGATGTACTGGTCAAATGTATTCAATACTATCCACTATAATAAAATACAGTTAGAGTTGAACTGTAATTGAAAACCCACTACTACAAGGACTTTGGCTAAGGAATAATAAACTAGTTGCATATTACTCAactagttccccccccccccccaggccggATTACTGCAGATGTCCTCCGTCCTCAAATAGCATTGATATTGTGGCCCAAAGCCCACTGATCATTTGACAATGTAAATTATACATATTTATGGTGCTGTGGTAGGggattatataaaaaaaatatatatttttactgaaCATTGATTTGTTTTCACAATTGTATTACTTCCTCTATAAAATAAAGTACAAATATTCTTGAATTTCTTAAATTAATCTAATCATTTCCCTACGGTATGGGTTAAAATATCAATCCAAACAGAGACAGGCAAGAACATTGACTTAAAGTAACATTTTTAAACCCCACCACAGGTTAGAAGCAGTAATGTCTACTATGGCCCTGTTTTTTTGGCATTGAAATAAGGGGCAAGTATCAGTTGTTGGGAATCCatctaaactgaacaaaaatataaaaaacgcagcatgtagtgttggtcccgtgtttcatgagctgaatttttttttaaatccctgaAATTTGCcaaacgcacaaaaagcttatttcgctcaaATGTTGAACATAAgttggtttacatccctgttagtcagCATGGTTATTACAccagtgcaccttgtgcttgggacaaatgccacagatgtctcaagtgcaattgacatgctgactgcaggaatgtccaccagagctgttgccagtgaatttaatgttcatttctctaccataagctgcctctgtcattttagagaatttggcagtacgtccaaacggcctcacaaccgcagaccacatgtaactacgccagcccaggacctctgcATTCCGGCTTagtcacctgcgggatcgtcagaggggtggtgaggagtatgtctgtctgtaacaaAGCCCttctgtggggaaaaactcattctgattggagcTTCCAagtcaagtgaaatccatagattagggcctaatgaatttcaattgacagatttccttatatgaactgtaactaagtaaaatcattacatttatatttttgttcagtatagatactGTAAAATGTAAATCAACGAAAATAAATTCCATGAGAAAT

Function

GO:

id name namespace
GO:0044425 obsolete membrane part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005921 gap junction cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2638655 lncRNA upstream 11163 21324312 ~ 21324772 (+) True G2306706
TU2638640 lncRNA upstream 80732 21254840 ~ 21255203 (+) True G2306692
TU2638609 lncRNA upstream 97446 21233278 ~ 21238489 (+) False LOC110488070
TU2638610 lncRNA upstream 97446 21233278 ~ 21238489 (+) False LOC110488070
TU2638611 lncRNA upstream 97446 21233278 ~ 21238489 (+) True LOC110488070
TU2638635 lncRNA downstream 16639 21354346 ~ 21354926 (+) True G2306687
TU2638633 lncRNA downstream 17351 21355058 ~ 21356436 (+) True G2306685
TU2638665 lncRNA downstream 19006 21356713 ~ 21356926 (+) True G2306716
TU2638682 lncRNA downstream 67122 21404829 ~ 21405300 (+) True G2306732
TU2638763 lncRNA downstream 187735 21525442 ~ 21525891 (+) True G2306790
NM_001195164.1 mRNA upstream 7213 21326921 ~ 21328722 (+) True LOC100499586
XM_021560054.2 mRNA upstream 15540 21312509 ~ 21320395 (+) False LOC110488073
XM_021560060.2 mRNA downstream 12244 21349951 ~ 21354244 (+) True LOC110488075
XM_021560064.2 mRNA downstream 20554 21358261 ~ 21388079 (+) True LOC110488077
XM_021560061.2 mRNA downstream 59613 21397320 ~ 21403121 (+) False stpg1
XM_021560062.2 mRNA downstream 59640 21397347 ~ 21403121 (+) False stpg1
XM_021560063.2 mRNA downstream 59642 21397349 ~ 21403121 (+) False stpg1
TU2638636 other upstream 12039 21320623 ~ 21323896 (+) True G2306688
TU2638628 other upstream 24057 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other upstream 24128 21307558 ~ 21311807 (+) True LOC110488072
TU2638087 other upstream 521637 20813189 ~ 20814298 (+) True G2306173
TU2638086 other upstream 521746 20813189 ~ 20814189 (+) False G2306173
TU2638805 other downstream 249381 21587088 ~ 21587434 (+) True G2306825
TU2639980 other downstream 1068310 22406017 ~ 22416292 (+) True c32h5orf49
TU2640356 other downstream 1266613 22604320 ~ 22604721 (+) True G2308224
TU2641501 other downstream 2641643 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 2641761 23979468 ~ 23980779 (+) False LOC110488133

Expression Profile