RNA id: XM_021560063.2


Basic Information

Item Value
RNA id XM_021560063.2
length 1442
RNA type mRNA
GC content 0.45
exon number 8
gene id stpg1
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21397320 ~ 21403121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCGGAAACACTGTATCCTCACTCAGAAATGTGTTTCTGGCTACTGTGACAGCAGTTTGATTGTCAGGCGGTGCAAATGCATCGGGCACCTGTACCTCCAGTTGTGTTGAATGTCTCTTAGCTAATGATGGGCAAAATACACAAAGGATTGAATGACAAATGAAAACCCAGGGCCAGGCACATATATGTCTCACAGGCCTGCTGAAATCAGCAGCCCCTCCTTCTCAAAGAAAGGTACAGGAGGCTTTGCATCCCAGGCTGTCAGAGTTCCCCGTAACCCTCAGAGAGGTATCCCAGGACCAAATGTCTATAACCTGCAGTCCTCTCTGATCCACAAACACAGCTTTGGCAGGGGAGGCTCCAGAACTTTCCGACTACCAGTGGCTGTACAACATGATGGCCCTAAGAACAAGACACCAGCCCCTAATCAATATCATGTGTCTTTCAATGGGGTAAAGCCAAACACGTTAGTGTCCGCTCAATCAGTATTTCTGTCAACAACTGGACGGAGTTCTATGTGCTCAAACACTCTAAAAGGACCATCGCCATGTCACTACAAAGTCAATGATGCCATAACTCAGAAATGCCCCAAGGTTCCCCTCTCCTGCTTTAAGTCCAACTCTGTGAGGATCCAGTCCCCTGTGAATAACCATGTCCCAGGCCCAGGCACCTATAGTCCCTACCAGGCCCCAGAGCCAGTCAGGAGAACCATCCTACCGAGGAGACATTACCTGGGAATATCAGCTCCCCCTCTGATTCTTCTGAAGAACCCTCCCCTGCCTGGCCCTGGGCAGTATGATGTAGTGAACTATGGAGACCCGACCAAGCACTTCATGTCCAGTGCCGTGTTTGTTTCTGGGACAAGCCGTTGGACCCAGGATGTGCGCGGCCAAGGAGTTCCAGGGCCAGGTTACTATGAACCAGACACATCATCAAAGCGGTCTTTCTTATACAATTACTCCAACAACTGGATTCCAGCATGAAGCACTTGAGGCAACTCACATTGCTTTTGTGTGGCTGTTTTTGCATGTGTTCACACCACACTGGGCATATATTTACTAGTGTACTTTATGTGGAATTGTATTGTGGTTGAGTGGCTTGGTGTGGGAGTTTGTTTCTGCATGTAAGGAAGGTTTTGTACAATGTTTTCATGTGCATTCCATGTACTGTACGCATGTGTTTCACTGTGACTAAAGAGAAAGATACAAATCACTTCATATTTCCATCTATTCAGTAATTGTATTTCcaatacagtgtcttcagaaagcattcataccccttgacttattccacattttgttgtgttacagcctcaattcaaaatggattagatTCCATTTGTTCCACTtccaactacacacaataccccataatgacaaattaaatccatgtttttagaaattttacctaatgtattgaaaataaaacagaaatatcttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2638665 lncRNA upstream 40423 21356713 ~ 21356926 (+) True G2306716
TU2638633 lncRNA upstream 40913 21355058 ~ 21356436 (+) True G2306685
TU2638635 lncRNA upstream 42423 21354346 ~ 21354926 (+) True G2306687
TU2638637 lncRNA upstream 59642 21335935 ~ 21337707 (+) True LOC110489444
TU2638655 lncRNA upstream 72577 21324312 ~ 21324772 (+) True G2306706
TU2638682 lncRNA downstream 1708 21404829 ~ 21405300 (+) True G2306732
TU2638763 lncRNA downstream 122321 21525442 ~ 21525891 (+) True G2306790
TU2638685 lncRNA downstream 152314 21555435 ~ 21560285 (+) False LOC110488088
TU2638686 lncRNA downstream 152314 21555435 ~ 21560195 (+) False LOC110488088
TU2638687 lncRNA downstream 152314 21555435 ~ 21560635 (+) True LOC110488088
XM_021560064.2 mRNA upstream 9270 21358261 ~ 21388079 (+) True LOC110488077
XM_021560060.2 mRNA upstream 43105 21349951 ~ 21354244 (+) True LOC110488075
XM_021562150.2 mRNA upstream 60205 21334316 ~ 21337144 (+) False LOC110489444
NM_001195164.1 mRNA upstream 68627 21326921 ~ 21328722 (+) True LOC100499586
XM_021560057.2 mRNA upstream 76954 21312546 ~ 21320395 (+) True LOC110488073
XM_021560070.2 mRNA downstream 6892 21410013 ~ 21458853 (+) False map7d1b
XM_021560071.2 mRNA downstream 6892 21410013 ~ 21458853 (+) False map7d1b
XM_021560072.2 mRNA downstream 6892 21410013 ~ 21458853 (+) False map7d1b
XM_021560073.2 mRNA downstream 6892 21410013 ~ 21458853 (+) False map7d1b
XM_021560075.2 mRNA downstream 6892 21410013 ~ 21458853 (+) False map7d1b
TU2638636 other upstream 73453 21320623 ~ 21323896 (+) True G2306688
TU2638628 other upstream 85471 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other upstream 85542 21307558 ~ 21311807 (+) True LOC110488072
TU2638087 other upstream 583051 20813189 ~ 20814298 (+) True G2306173
TU2638086 other upstream 583160 20813189 ~ 20814189 (+) False G2306173
TU2638805 other downstream 183967 21587088 ~ 21587434 (+) True G2306825
TU2639980 other downstream 1002896 22406017 ~ 22416292 (+) True c32h5orf49
TU2640356 other downstream 1201199 22604320 ~ 22604721 (+) True G2308224
TU2641501 other downstream 2576229 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 2576347 23979468 ~ 23980779 (+) False LOC110488133

Expression Profile