RNA id: XM_021560078.2


Basic Information

Item Value
RNA id XM_021560078.2
length 4151
RNA type mRNA
GC content 0.51
exon number 17
gene id map7d1b
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21410013 ~ 21458853 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCATAAATATTCGTCAAGCAGTTCTATTGCTACGGGCAAGTCCCTGTGCCCAGCCCGGACTTCTCGATTTCGTAGTTGATCTATTAGAATTTGCAATAGAATAGCATCTGACAGGTTCTCTACCTCAAGAGGAAATAACAGAGACTTTTATCGACTACTTGTCATTGTAATTTTTCACACCCGTTTTTCACTGGATTTCTGTCCAGTTATTATATTATCTTTTTCTCCCTACCGTTCCATTTTGGATTTACGAAGGGCGTATTGGTGGTCAGACTGTACCGGGAGTTTGTTATCCTGTCCTTCGATATATTTGAGGAATGACTGCAACTGGAAAAGGACTGCGAATTGCTTAAATGGAAAAAATGGAATACAACGATCTTGAGAACGATTTTGATGAGAAACTGACATTAACAGAGAAATGTCTCCCCTCCACACCAGAGCCTCGGCCCATCCAGAATGAAGAGAAGGAGATAATCAAGGACCTACTGACACCAGATGACTCAGACATTTCAGACCTCTCCCCAAACACAGAGTCCTGTCCCAAAACAGACCTCTCCCCAAACACAGAGATCTGTCCCAAAACAGAGCACACCTCAAAGACAGAGTCCTCCACCAAGACAGATGCCAGACCTGGCACCCCTGGGTCTAGTACCAGCCCCCAGCCTAAAAAAGGAGATGGGTTGAGCACAGAGCAACGACAGAAGCAGGCCAAGGagcggagggaggagagggccAAATACATTGAACAGCAAACTCAGCTGCAAGCGGCTAAGAAGGCCCAGTGgctggagaaggaggagaaggcgAGGCGTCTGAGGGAGAGCCAGCTCGAGGAGCGCAGGAAGAGGCTGGAGGACCAGAGACTGAAGCTTGAGAAACGAAGAGCCCtcctagaggagaaacagaggcagAAACTTGAAAAGAACAAGGAGCGCTACGAGGCGGCCATCAAGAAGTCAACCAAAAAGACCTGGGCTGAAATCCGTCAGCAGAGATGGTCCTGGGCTGGAGGCCTCAACCAGACCTCCCGCAGACAAACTCGCAGTCTGCGTCTGAGCCCGTGGGAGAGCCGCATCGTGGAGAGGCTCATGACTCCCACCCTGTCCTTTTTGGCCCGCAGCCGCAGCGCTGTGACCCTGCTCAACCCCAGCGACTCCCGGGACCTCCACTCTCACCACTGCTCCCGTTCAGCCTCCGCCAGCCCCCTGGACGCCTGCTCCCACCACCACCCTCACCGGAACACCTCCGAGCGCTGGAGGGGAGGAGTGTCCGCCAGCACGCCTGACATCACACAGCGCCAACGCCGACGGAGCTCAACGCCGTTGGataagaaaaagaaagagaagaaagacaAGGAGAGGGAGAACGAAAAAGAGAAGAATGCTCTTTCCAAAGAGATCGtgctgaagaagaagaagaccgcAACAACGACCCAGACCACCACCAGATCCAGGCCGGCGTCAAGCAGTACCCCCAAACCGAAAAACAGACCTCCGTCGCCTGCGGCGCCCAAAAGCAGACCGTTGTCCCCCTGCCCTCCAATGGCCCCCAAGAACCCCTCCACAGACAAGAAGACCCCCTCGGGCACCAAAACCCGCCCCAAACGAGCCCAGACACCTGCCAGGGTACAGCCCCAGCCGGTCGCCGCTGTCGTCGTGGAAACAAACAGCGAGCCTCATCAGCCCGACACTCCTGAGACAAAGAGCGCCAGTAACGTTCCTGCCATTATGGTGTCTTCGGCGCCGGTGACACCCCCATCGCTGAGTGCACCAGTCACAGTGGTCACCTCCACTCCTGCCTCAAACCTTGAGCTGGCTACCCCAACTGCCCCGGCTGCCTCAGCTTCCCCGGCTACCTCATCTACTCCAGCTTCCAGACCCTCAGCCGGCACCAACAACCCAGAGGAAGCAGCACGAGTGCTGGCTGAGAAACGCAGACAGGCCAGAGAGCAAcgggagagagaagagcaggagCGCCTTGAGCAGGAGCAGAGGTTAAGGATTGCTCGTGAGGAGGGCATGGCTCGggaggcggaggagaggaggCGCAGGGAGGAGGAGGCGCACCTCATGGCAGAGGACCAGCGTCTGAGAGACGAGGCGCAGCgtctggaggaggaggtggtggtgcgGGAGAGAGCCAGGGCTGAACAGGAGCAGAATGAACGCCTGCAGAAACAGagGGAAGAGGCTGATGTCAGAGCTCGTGAGGAGGCGGAGCGTCAGCgcttggagagagagaagcacttCCAGAAGGAGGAACAGGCACGCCTGGAGAGAAAGAAgCGCCTTGAGGAGATCATGAAGAGGACACGtaagagtagtgatgctggagaAAAGCCTACACTGCCGAAGGATTCCACTTCCCCAGCACAGGCCAATGGCAAGGACACTACGGACAGAAGTAAATCTCCTGAGAGCAAGCAGAGTGCAGCAGAGTCTGCCCCTGTGCTGAACGGTGTCCAGCCAGCCAAACACCAGAACGGTCTCTCAGCCAATGGTGAGGCTGCTGACTTTGAGCAGATCATTCAGATGCCCAATCACAGCGGGAGCAGCAACGGTGGGCCAGGGCAACTGGGGAGTGACATAGTCAGTGACCCAATCCTGGAGCCCTTCCTCATGAAAACATGTCCAATGAAGCCTCAGCATGCTGCAGGTAGCTATGCAGaagtCCTCTGAGACACCAGGCCACCGGTCGATCCAATCAGTTTGTGCCACACGACACAGCAGTTTAGAAATAAAAAAGTGtgccaaacaaaaaaaacaactatGGACTGCTTTTAAATGACTAAAAACATATATCTAATGCCGCAGAGGTCGAGAAGGAGGAAGAAAACTCTGCGGAGAAATACTTGTTGAAAAATGAACAAAAAAAGCAAAAAATGATGTCTATCTTCTTCACGGTGTGTTATAGTGCAACATGTGTTAAGTTTTATTGAAAATGTCACATGCAGAGGTTATGGTGCACCTTAAAACGACTGACAGTGTAATATTAGGAATTTTTGAGAATTATAAGACCTGGAAATATACAATATTTGACTATggttgtaattattattattattattattattattattattattattattgtcatcatcatcatcgttgtTATTCTATTGCTATTGTTATCTTAAGTTGAACAAAGTGTGTGTTGGTTCTTTTTTGTCTTGTATAATTGAGTTATTGAACTAGGAGAGGGAGCAGAGCAGTGTGTACATGTATATGAGCCTGGCTGCCTAGGCCTCCTGCCATGGGGGAGCTGCGGGAtaaagcttcatgaaatggagagtgcctgtctttctttctctttctgtccgtCTGTGCGTCTGTTTGTGTCACTCTCGTCTATTGTTTAAGATGGTATGATACAGACTAAGTAGTACATTTCTGTTGGCTCAATGTCTGATAAGTGAAACATGAATGTATGGGACGTGAGTCTAACATTGTCACAGAGTCTTACATTTGCCAGGAGTTTGATCAGCGGTTGTTAAACATAATCTGTTACGGTTGGTTTCTTCAGTGTTTTTCCATGTCGCATTTGAATCACATGAATACAGAGAGGAGAATCAGGACACAGTACAGTATCTGTCTGCTATTCCATGTCGCTGCTGGTTCCATCAGGACACAGTACAGTATCTGTCCGCTGTTCCATGTCGCTGCTGGTTCTATCAGGACACAGTACAGTATCTGTCTGCTGTTCCATGTCGCTGCTGGTTCTATCAGGACACAGTACAGTATCTGTCTGCTGTTCCATGTCGGTCCTGGTTCTATCAGGACACAGTACAGCATCTGTCTGCTATTCCATGTCGCTGCTGGTTCTATCAGGACACAGTACAGTATCTGTCTGCTGTTCCATGTCGCTGCTGGTACTATCAGGACACAGTACAGTATCTGTCTGCTATTCCATGTCGCTGCTGGTACTATCAGGACACAGTACAGTATCTGTCTGCTGTTCCATGTCGCTGCTGGTTCCATCAGGACACAGTACAGTATCTGTCTGCTGTTCCATGTAGCTGCTGGTTCCATCAGGACACAGTACAGTATCTGTCTGCTGTTCCATGTCGCTGCTGGTTCCATCAGGACACAGTACAGTATCTGTCCGCTGTTCAATTTCACTGCTGGTTCTATAAAGGCTCTATCTGCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2638682 lncRNA upstream 4713 21404829 ~ 21405300 (+) True G2306732
TU2638665 lncRNA upstream 53087 21356713 ~ 21356926 (+) True G2306716
TU2638633 lncRNA upstream 53577 21355058 ~ 21356436 (+) True G2306685
TU2638635 lncRNA upstream 55087 21354346 ~ 21354926 (+) True G2306687
TU2638637 lncRNA upstream 72306 21335935 ~ 21337707 (+) True LOC110489444
TU2638763 lncRNA downstream 66589 21525442 ~ 21525891 (+) True G2306790
TU2638685 lncRNA downstream 96582 21555435 ~ 21560285 (+) False LOC110488088
TU2638686 lncRNA downstream 96582 21555435 ~ 21560195 (+) False LOC110488088
TU2638687 lncRNA downstream 96582 21555435 ~ 21560635 (+) True LOC110488088
TU2638783 lncRNA downstream 107775 21566628 ~ 21566950 (+) True G2306808
XM_021560061.2 mRNA upstream 6892 21397320 ~ 21403121 (+) False stpg1
XM_021560062.2 mRNA upstream 6892 21397347 ~ 21403121 (+) False stpg1
XM_021560063.2 mRNA upstream 6892 21397349 ~ 21403121 (+) False stpg1
XM_036970649.1 mRNA upstream 6892 21397716 ~ 21403121 (+) True stpg1
XM_021560064.2 mRNA upstream 21934 21358261 ~ 21388079 (+) True LOC110488077
XM_036970654.1 mRNA downstream 3368 21462221 ~ 21500971 (+) False thrap3b
XM_036970653.1 mRNA downstream 10408 21469261 ~ 21500971 (+) False thrap3b
XM_036970652.1 mRNA downstream 10503 21469356 ~ 21500971 (+) False thrap3b
XM_036970655.1 mRNA downstream 10846 21469699 ~ 21500971 (+) False thrap3b
XR_005041279.1 mRNA downstream 29943 21488796 ~ 21497304 (+) False thrap3b
TU2638636 other upstream 86117 21320623 ~ 21323896 (+) True G2306688
TU2638628 other upstream 98135 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other upstream 98206 21307558 ~ 21311807 (+) True LOC110488072
TU2638087 other upstream 595715 20813189 ~ 20814298 (+) True G2306173
TU2638086 other upstream 595824 20813189 ~ 20814189 (+) False G2306173
TU2638805 other downstream 128235 21587088 ~ 21587434 (+) True G2306825
TU2639980 other downstream 947164 22406017 ~ 22416292 (+) True c32h5orf49
TU2640356 other downstream 1145467 22604320 ~ 22604721 (+) True G2308224
TU2641501 other downstream 2520497 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 2520615 23979468 ~ 23980779 (+) False LOC110488133

Expression Profile