RNA id: XM_021560094.2


Basic Information

Item Value
RNA id XM_021560094.2
length 4530
RNA type mRNA
GC content 0.45
exon number 3
gene id tmem170b
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21677669 ~ 21690701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTGACGGCCCCTTTAAGGGTTATGTAGAGAGAAGGGCTGATGTAGGACGACTCCTCTGTGTGCGCTGCCATCCTCATCATGGCCTCCAAACAACCGCCGCTGCTACCGAGAATGAGCACGAGCAGACGAGCTGTTGGCCCTTTCCTTCCCCGCGCGGAGACCAACAACGTTAAGCCGAAACAGAGGCACCGGTAGAGGGGTGCGCGCCGGGGGATCAAGCCTCCGAGCTCATGCCACCCCGTTCTCTTCGATGTCTTCGTCAAAAGCCACTTACAGCCATTTGTCAAAGAGGGATGCAAACCCGGGCGGCGGCAGAAACATGAACACGAATAGGGATTATTCTATCAATCTATCCGTGCAGCAAGTGCTGAGCCTCTGGGTGCAAGGCACGACGCTGCAACATTTCACAGAGATGTGGTACTGGGTGTTCCTGTGGTGTCTTTTCTCCTCGCTCTTCGTCCACGGGGCAATGGGCCTGCTCATGTTAGTCATGCTGCAGCGCCACAAGAGGGGTCGCCTCATCACCCTGGTCCTGGTCAGCGTGGGCTTCCTGGCCTCCTTGGCCGGTGGGGTCATCACCAGTGCGGCCGTGGCAGGGGTGTATCGTGTGGCAGGGAAGGACATGGCCCCCCTCCAGGCCCTGGTGTTTGGAGTGGGCCAGACCACACTCTCTGTAGTCATCTCCTTCTCACGTATACTGGCCACTCTCTGAAGAGATGACTCTGCTACACGGACAGACTCACTGACGAACAGACacacaagagaggagagaggaaaggggaagggAGGGACATCCCACCAGTTACACAAGCAGAGACGGCAATGGGTGGCAGTTAACTGCATGTAGTATTTGAAGGAAAACAAACAGTCAAATAGAAGAAGTGAAGAAGACGGTGTCCCAGTCCTAGACGTCTAGACATTTGGGGATGGATGAATGTGGAAGAGTGCCGCCTAGTGTCTCTGTTCAGCCACTGCTACGTTTGCTAGAGCTCCCTTTGCTACAAGGGACCTCTCAATGCAGGCCTCACTTCTGTGTGTCAAAGACACACACTTCCTTGGGCTCTCCACCAGTTGGCGATGTCCACAGACTCTGTCAAGTGTCAAGCCAGTGAAACCACATCCTGAACTGAAAGCTAATTTGAGGTTCTATGTGCCGATGTCCTTTGGGACTTAACTTCAGTGTTGTAAAGGGGAATGCTTTCATGGCCATCTCTACAGACGGTTGAAGGCTTTCTGTTCTATTTGTGGGGGGGAActccacatttttttttacagtaaagaCAAACCACAGCAACCTGTAATTAATTGAACAATTCAAGTCTACGGTCCTTGAAGTGCCACGGTACTTTGATGAGATGGCCAGAACAAAATTGGACCTGTGAAGACCCACCATCATTCTGACATGCCTGAGAGGTTGTAAACGCAACGATGATGGTCAACCAAACTACCATTCAGTGTTAAAAAAATCTACCAACCACAAACAACTGGATCTTCTGTCCTTGGAAACTGATATCCTAATAACCATTCCTTCTTGTAAAGTATTCTAACTACCACAGCAGGTTTTTTGTTTGCAACAATCCATAATGCTTAACCTTTGCACTTTCTAAATGTTGGTGATCCACCTCCTTTACCTAAGAGGTGTCTAAATAGAGTAGGTTGTTGAGGTTCCGTTGGTTCAAAGTTACTATGGAGATAACCACTACGCTTGTTAAGGGCTCTGCATACGCAAACGGAGCTGACGTAGGTCCATCATTTGCGTTGACAGTGTAGAGCCCTTTAGATATTTGTCAAGTCTAGACCAGTCCAGGTTGTCCAACGTACTCTGGGGAAATAGCAACTCTGACCATGAACCTTGTCTGGAGAGGGTCAGAGTTGCTACTTGGTTCTTACAGGGTTTTATGGAGGTAAACTAATGTATTAACTGAAGTACAAAGAAAGAATTGTcctagtagtagcagctgtattGCTTCTTGAGGAATATCTCTGATAGAGTATCTCTTGGAAGTTTTACTGTCTGTGTTGTGGTGCAGATTTACTGTTAAGGTTTAGCGGTTGGAATCCAGCTGCTACTTGGCTGTTGTGATAACAATGTTGTCCTGACTCCTATAAATCCCACTCCATAGAGAGCCATTcctggagaaggtcagagacttagtgtgcatcccaaatggtaccctctccctatatagtacactgcttttgaccagggtcaataggactgtatagggaatagggtgccatttgggaagcatccTCTACTGCTGCTGAAACAGCCATTTTCTATGGctccctgccttcctccctgTTAGTTCTTGCTAATCGTGTGTGTATTGTTTGTGTTTTAACTAAGTTTGACTTTGCATATTGCACTGACAACGGCCTGCCTTTATTTCGCACAGTTTGTTTTATGATATTGGTCCCAGTGGGTGACCCATAGATCCATAGGATTTTATACAGTATGTCCCATCACCAGTACACACAGTGGGTCCCAAAAAGCAGGTttttgtccaaaatggcaccctgtgcCCTTCATAGTGCACCCTTTTTTGACCGTAGCCATATGGGTTTGAGAAGCACTGCTGTGGTTTTGGAGGTGCTTTTGGGACTGcagagcaatgttttttttgtggggCCCTGTGGGACTAACCATAAtgaatgtgtttgtgtctgtcctGTCCACCCTCTGGAACAGTTCACATTTATTAACCAACTATAGGACAGGTcttactgcatcccaaatggcactatgtTCCCTACaatgtgcactacttttcaccagagccctatgggggaaTTTGGGACGCACACATTCACTCCTGGAATTGAAGGGTTGCAAGGCCCACTGGTTTGTACCTTACAATGTCATTCATTTTTTATCAATAGCTGACGATATCCCATCTCTCAGTCACTTTCATTTGTCAGTAAATGACTGTGGACCAATAAAACAAGGCCCTCTGCTGCACCCTAAACTAGTTGTGAATACCACACCAGGCCCTCTGCTGCACCCTAAACTAGTTGTGAATACCACACCAGGCCCTCTGCTGCACCCTAAACTAGTTGTGAATACCACACCAGGCCCTCTGCTGCACCCTAAACTAGTTGTGAATACCACACCAGGCCCTCTGCTGCACCCTAAACTAGTTTTGAATACCACACCAGGCCCTCTGCTGCACCCTAAACTAGTTGTGAATACCACACCAGGCCCTCTGCTGCACCCTAAACTAGTTGTGAATACCACACCAGGCCCTCTGCTGCACCCTAAACTAGTTGTGAATACCACACCAGGCCCTCTGCTGCACCCTAAACTAGTTGTGAATACCACACTAGGCCCTCTGCTGCACTCTAAACTAGGTGTGAATACCACACCAGGCCCTCTGCTGCACCCTAAACTAGGTGTGAATACCACACCAGGCCCTCTCTGGAAACAAAGGGTTTGTTTTTATGCCAAAGGACTTCATTCTCACATGTTAGCTTTATTTGTTAAGGGTTCCTTATTTTTTGATTGTTGTTATTATTGCTGAGAAAGTATGAATCGCTTTAATTTCAGAACCATTATTTTGCACTGAGCTAAACAGATTTAAAATCCCCAAACCCACAAAAAGTTAACAAAATTTGCTTCATTTTGGCTTAATATAAAATTCCAGTGTGTGACCTAATTGAGTGATCTAAGAGTGTTTACCAATGAAAGTGATTGCTCTGTTTTTTCCTTAGTTATGTAATTGACACCACTCACCTTCAATACCCAGTCTGCGCACCAGAGGGAGCCAGTACGCTGAGTATTGAATAAGTGATAGTAGTAGCCAGTGTCAGTGGTGGATTTGGATTGATACAGTAATGATCGTGGTTGTTGTATAGAAGAAAATATACCTGTGGCAGTTTTTTGATATGGTCAATTTGTATTTGATTCTAAAATGAATTCCTGAGGCTTCCAGATGGTCTGGAAACGACTGTGTTTGATAATTTGCCTAATCTAATATGACTATCCAATACTATCTCTCTCAGTACTCTCTGATTAAAGAAAATACTTGGATAAAACAAACTATAATCAGCAAATACTATTAATGATCAAATTCCCCAGATCAACTGAATTCATTTTGTATTAGTAAGTTATTACACTCATTTTAATATTTTTGGCTCGAGTTCGGAGACCAAATGTGAGTTATTTCTGATGGCTCTACAATGCTGTCATAGCGATATTATCTAGATATTTCTGTTTGTGAATGAAACTGCGTTTGAGAGTTGGATATGGTGCATAGGACTTGTGACAAGAGTGTTGTTGtgtgatgttgtactgtatgtctgtgtggttgtatATGTGAGTGTTATAACAGGcattaacttgttttttttttcagaaGGGGCCTGCATTACAATTGTCATTGCAGCATCTGAAATGCTTTATCGAGTTGAGCAAAAGGGGTAAGGACCTTGTCATAGGTGTAACACTGACTGACCCAGTGTGTTCAGAAATGTTGTCTTACTGAGCAATGTCTTACATAATGTGTTTTtaaaatctttaaaaaataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2638872 lncRNA upstream 2388 21674986 ~ 21675281 (+) True G2306892
TU2638870 lncRNA upstream 6280 21671151 ~ 21671389 (+) True G2306890
TU2638866 lncRNA upstream 10322 21667135 ~ 21667347 (+) True G2306886
TU2638830 lncRNA upstream 51391 21626078 ~ 21626278 (+) True G2306850
TU2638823 lncRNA upstream 62516 21614873 ~ 21615153 (+) True G2306843
TU2638892 lncRNA downstream 11004 21701705 ~ 21702152 (+) True G2306912
TU2639060 lncRNA downstream 358395 22049096 ~ 22050469 (+) True LOC118946490
TU2639832 lncRNA downstream 484292 22174993 ~ 22175406 (+) True G2307767
TU2639866 lncRNA downstream 535585 22226286 ~ 22230151 (+) True G2307792
TU2639852 lncRNA downstream 566435 22257136 ~ 22259964 (+) True G2307779
XM_021560091.2 mRNA upstream 119404 21555375 ~ 21558265 (+) False LOC110488088
XM_021560090.2 mRNA upstream 129786 21535605 ~ 21547883 (+) True LOC110488087
XM_036971770.1 mRNA upstream 147077 21527584 ~ 21530592 (+) True LOC110489402
XM_021560084.2 mRNA upstream 162435 21513289 ~ 21515234 (+) True LOC110488083
XM_036970650.1 mRNA upstream 176698 21488797 ~ 21500971 (+) False thrap3b
XM_021560098.2 mRNA downstream 52346 21743047 ~ 21829048 (+) False hivep1
XM_021560097.2 mRNA downstream 52351 21743052 ~ 21829048 (+) False hivep1
XM_021560095.2 mRNA downstream 52352 21743053 ~ 21829048 (+) False hivep1
XM_021560096.2 mRNA downstream 52731 21743432 ~ 21829048 (+) False hivep1
XM_021560099.2 mRNA downstream 52734 21743435 ~ 21829048 (+) False hivep1
TU2638805 other upstream 90235 21587088 ~ 21587434 (+) True G2306825
TU2638636 other upstream 353773 21320623 ~ 21323896 (+) True G2306688
TU2638628 other upstream 365791 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other upstream 365862 21307558 ~ 21311807 (+) True LOC110488072
TU2638087 other upstream 863371 20813189 ~ 20814298 (+) True G2306173
TU2639980 other downstream 715316 22406017 ~ 22416292 (+) True c32h5orf49
TU2640356 other downstream 913619 22604320 ~ 22604721 (+) True G2308224
TU2641501 other downstream 2288649 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 2288767 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other downstream 2288856 23979557 ~ 23980779 (+) False LOC110488133

Expression Profile