RNA id: XM_021560096.2


Basic Information

Item Value
RNA id XM_021560096.2
length 9188
RNA type mRNA
GC content 0.51
exon number 9
gene id hivep1
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21743047 ~ 21829048 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTTCTGGGGCAGTACTCTCACTGGGCGATCGTTCATGCTACAACGCCTGACGGGGACGTTCTTGCTGGTTCGGCTAGTTATTTGTATTCAATGTATTCACCGTTGTGTTTCTTTTAGCTCACGCCTGTGCTTTCACGTTTGCAAAGAAGGAATGTCAAATTTTGGGATCAAACAAGTTAAGCTTTCAGAACCGTCGTTGCTTACCATAGAATCGTTGTTTTGGTGTAACGTTATACGTCTGCAGCATTCGAATGTGGGTTGTGTAATGTTGCTGTCTTGCTTGCTACTGAATGTGCCTGTCTATTGCGCCAATAGATGAACCCAGAGGGTGTTCGTGGTCCACCTGCATTAGAGAATTGACAACCTTTCAGAAGATGTGTCAGTGAAACAACCAACAAGAAAAGATGCCGCGAACCAAGCAGAACAACCCGAAGAACCTTAAAGATAAAATCGAAGAAGCACAGAATGAACTGAAAGATACCAAAGCCGGCGCACAGAAAGGGATCAATGAGGGTGGTCGAAGAAGTGCAGATAACATAAAGGCACTGAAGAGGAAAAAGGTTGTGAAAGAAAACCAGCTGAAGAAAATACCCAAATCTCCCGTAAAGAAGTCCTTGCAGTCCAAGACCTCCGTGGCAACACTCCAAGCTGCCTCGTCCAAGGAAGCCGCACCCTCTTGCTCCTACCCCAACAGCCCTTCTCAAAACCCTGCCAGCTCACCAAGCCAGAACCGAGATACAGAGTATGTCCAGCCTAATGCTGAATCCTCTGAGGGAGTGACATCCTCCATTGACAATGATAGGCTAAAGCAGAGGGATACGTCCTTCTCAAAGCCACAGTCTCTCGATCCCATCAGTGGTAAAGAGGAATCTGTCTCTGGTGTTGGGGAGTCTCAGCAGCTCAAGGACAGTAAGAGTGACGAAACAAGCTGTGAAGGTGACTCTCCTTACCATGCTAGCGCTCCCCTTGAAGTCTTGCTCAGGGCTATGGAATCAGACTTCAGCTCCTTGTCAGAAAAGAAAAAATCCTTTCCAGTCACAGCCATTGAAAAACCTGGCCGAACTCTTTCTGCTCAGTCTAATAGTGAAGTAAATGCTATGACAGCTATACATTTTGGACTCCAAACTCAGCCTGCGCATATGCAGAATGACTTTGTAAATAAACAAGAGACTTACACAATGCACTCCTCTACCCAGGCTGTTCCCTTGCAGACTTTGCAGCATGCTACACAGCATTTCAGCAACTGTGGGGAAAAGCCTGGCTTGCAGATGAGCTTCAGTACTGGCTCCTCCGATACCCTAACTCATTCACCTGTTCCCTCAGGCTCCAATTCCTTGCCTCGGAGCCAGCCGCCGGTGGTGCACACATGCCAGTCCCTATCGGCTAGTGTCCCTAGCACCATTCAAGTCCCTGTTACACCTGGTTACAACCCAGTCCAGATGGCCACGGTTGTGAACTTTGGGCTTGAACAGATGTGTAGCATCTCAGCAAAGGACCAGAAGCCTAAGAAGCAGGGGAAGTATGTGTGTGAATACTGCAGTCGGGCATGTGCAAAGCCCAGTGTGTTACTCAAGCACATCAGGTCTCACACAGGAGAGCGGCCCTACCCATGTGTTACTTGTGGCTTCTCATTCAAAACTAAGAGCAATTTGTACAAGCATAAGAAATCCCATGCTCACGCAATAAAACTGGGGCTTGTGGCGCGTTCCGACTCTGGAAGTGGGTCCCTCTCCGTGGAGTCTGACAAAGCACTTGGAACACATTCAGATGTGGAGGAAAGTGGGGACAGCGATGAGGAAAGTAgcacagcagacctagaccctgactCATCACAAAGCAGTGTTGCAGCGTTCTCTGAGAGCAGTTTGCTGAGTGCAGGCACAACACAAGGCAATCATGGGGATGCAGGGGACCCATCAGCTGTTTTCCCTCTGAGTCAGAGGGGCTATGAGTCCAAAGGGACAGCTAGCCTACCAAAAGTGGTCGTCTATCCTGTCAATGTCTCCCCTCAGCGGGCGGACAGTCCAAGAGTCACAGACTCCAGCCCTGAGCAGGCTACTGCCCAGCGGCAAAAGGACTTCCAAACGGCACATCTGAGATCCAGCATCACCGTACTGTCGTCCGTGAAAGAGGTGGATTGCACAAGCCCCTTACAGGATGCAGGAAGTGAGGATGAGGATCAGCAGTGCAGGACTCCACCAGGAGGCGGACATGGTCAGCTTCAGAGGCAGCAAGCCACAGACTTTTCTCAGCAGCAGCAGGGCAAGTGTCTGCTTAGTCCCCGCAGTTTAGGCAGCACAGACTCTGGTTACTTCTCACGTTCTGAAAGTGCAGACCAGGCCATGAGTCCCCCGAGTCCCTTTGTCAAAATAACCCCACCAACAGACATGGATGTCACCAAAAATGCACTTCCTAATCTCCCTGCAGTGGTTGCCACTGCCATGCATGTGGCTTCTGTGGAGAAGCCACGTGTTGTGCAAGGACAAATGCGTCCTCCATTAGAAACAAAAGCACTCTCTCTCGAGGAACGAATCTCAAAGTTAATATCGGACAATGAGGCAGTGGTTGACGACAAACAACTGGACAGTGTCAAACCAAGAAGGACTTCTCTTTCTAGGAGAGGTAGCATAGACTCCCCCAAGTCGTATATATTTAAAGACTCTTTTCAATTTGACCTTAAACCAATGGCGAGAAGGTCAAGTTCCAGCTCAGACATACCCAAGTCCCCCTTCACCCCCACAGAAAAATCTAAGCCAGTATTTCTTCTATCTGTACCCAATCAGTATACACCAATGGACTGTTTACCAATAACAAGAAGTAATTCTATGCCCACAACTCCAGGGCACTCGGGTCTCCCACCAAACATTGTCCAGCAACCCCACCCACTACGGATCTGTCAGTCTTTTGATGACAAAATGAGCTCCTTAAACGATGATGTGTTTTCATCTGCCCCCTCTACCCCAAATCCAGCAATACATTCTCGTACTCTTGTACGACAAGTAGCAGTGGAGGATTTCTCCACAAGTGAGGGCCTTACCTCAGTCCGTTCCATGGACGAAGGTTACCATGGGTCTAGCATCTCCACTGAGTTAATGCAAAGAAGCAGGTCTTTTGAGCATGCACAAGACCGAAACCGAAAGCCTCTGCAGAGCAaaggcacaatgtatgaatgtGAGACCTGTCGCAATAGGTACCGAAAACTAGAAAACTTTGAAAATCACAAGAAATTCTATTGTTCAGAGCTCCATGGTCCAAAAAACAAGCCAGTATCTGTCAGAGAGACTGAGCAGGATGTTTTTCAACATGTCATGCAGCAGCCGTTAGTCCCCAGAACAGTTATTTCAGGTATAATGGACCAACAGCAATCATTTAGAAAAAGAAGGAAAATGAAGAGTGTTGGTGACGATGATGACCAATCACCAACTGACACCAATCCCCCATGCTCTGTCAGTTTTGATTCTTGCCAACTATCAACAGCCAGTTCAGGTCGGCCATTTTCTCAGCACTCTATCATGGTTGATCTACAGCCTAAAAGCAACCCACCACAAATAACTCAAAATCAGCTAGTAGCAAGAGGTACAGATGCATCAGAATCAAGACTGTCACCGATCAGAGAAACCCAGGTTAACACCTCTGGTAAAGAGAGAGGCGACCTACAGAGGCAAGGCAGCGGTACATCAGTTATCAGACACACCAACTCTTTAAGCAAGCCCAATTCCTTTGAGACCTCTGAATCTATTGACAGGACCTCTCCTGTTGATTTCATGTACAACGATGGCCATAGCACAGGAAAAACTAAGACCGATGCTACTGCCAATCTTTCATTAGAGAGCTACCATGAAAAGATGTCCATTCCTAAATGTGCCGACCAGGGGAAACAAGGGATGGAAAACCGTGTCGACAGCACTTTAGCAGCAGTGGCTGAGAGCTGTGCTGCTGTCCAGCAGTCTCGTCTGGTTCGCCAAAATAACATTCCTGAAATCCTGGTCACAGAGGAACCCGATCGGGAGCATGACGGTCAGAGCACTGAGCAAGGGGAAAAGGTTGCAGATACATTCAACTGGCCCCAGAGGAGCGAGAGCCTGTCCAAACTACCGACAGAAAAGCTTCCACCCAAGAAAAAGAGAATTCGTCTGGCTCAGATGGAACACTCCTCTGGAGAATCAAGCTTCGAGTCCTCACTGTCTCGTAGCCTCAGCAGAGACAGTAGCCTCTCAAGATGCTCCAGTATCTCAGCCTCCTTCGACCGGGATGAGCCATCCAGGTCAGAAAGCCCCTCCAGAGGAGAATTTGTGAACAAAATATCTGAGCATCAAGGGCTACCAATAGCCTTCAACACCCTGGGGGTCCCTGGCATGATAAGACGTGCTGCCTCAGAACAGATCAGTTGTACTCAACCCTCAGTGGAGATCTTGTGCGACTATCGCAGCAAGTCCTTTGACTTTGGCAGTGTCTCCCCCAGCAGGTCTCTGCCACCCAACAGGTCAATGTCACCAATGGAACTGCCAACGAGTGCTCAAGCCTTCCCGTCTGTACAGGTACCTCTCATTGAAAGGCGAAGGGGGCCCTTGGTACGCCAGATGTCTTTAAAGATTGGGCCAGAGAGTCAGCAACATGTCGGGAGGCATGCCATACCTCTCCAGAGGCTCCCCACTGTATTCTCTACATCTCAGCAGAGGCCTCAACAGACTACCAACAAGCCTCCCCTTGCCCAACCCTTTATTGTGCATTCTGGAGAAACTCTCCCTCAGAAGAATGAAAGAATGGTGCAAAGCATTAACTTGGGCAGCCAAGGTCAACTGCCTCAAATTCATGGCCTTCCACACCCTTGGCACCTAACGTCGAGGGTTCAGACATGCCAAAATATACAGCAATCTGTGGTTCATGTCGTGGTCGGCCAAGAAGATGCCCAGAACAACTCTGCTGACTCTCAAGACAAAAGCTTTGTGCCCAAATACCAACTGCAGTGTCCTGCTCTGAGACCAAGCCAaacatactctctctctaccacacaggGTACTCAGACAACTTTGCCAGTCTTAACAATACCTATTGCCAATCAGATGCAAAGTATTTTGAAGTCTTCAGATgttctccacaatgtctgtgtggcACAACCGTGTTTTCAGATTGTAAGCAATAAGACACAATCAATAGTCTTGCCTGTAAGCCTACAAAATGACCCACCTTCTCAAAACCTACCAGGTGCTCTCCAATTGCCACAGATACTGATAACTCATGAGCAGATGCACCCTTCCCTCTCTGTGACCAGTAACCTGTATGTTGTAGATACTGACAGAAAGACTGTACCAGAAATGAACAAGGACAGGCTTCCAGCATCTACTAGCCTTCAAGTAAAACACGGTTTAGTTTCCAATACCCAGAACCATATTGGTGAAATTCAAAAAGCTCCCTCCCTGGGGTCCTTACACTGCACCCAGAAAATGGCAGCTGTGACCCTTTGCCCACAACAAGAGCCCATTGCCTCAAGCAAGAGAATGCTCTCCCCTGCCAACAGCTTGGATATCGCCATGGAAAAACATCAGAAGCGAGCAAAGGATGAACATGGTGCTGCATGCCTCACTGATGGCAGGTCAGTCAACTACCTGAACTCCAAGATGGCGGAGGTAACTAGGCAACGGAAGCTGATGCTAGTCCGGCAGGTGTGCACCACTGAACCAGTGGACAGTCCCATTGAAACTGAGGCCCCTCCACTGCAACACGAGAAGCCAGTAGGTGAAAAGGACGCCCAGACTCCTAAGAACTGCAAGACTATGACACCTGAAAGCACCGGAAAGGATGAACCATCTTCTGTAGTTCCCCAAGAACAACCACGCTCTGCATTAAACACCGCTCCAGGGAgtcatgtctcctcctctgtgCCAGCTAACGCCTCCCTGAAGCCTCAAGAcaagagcgaggaagagagatggTCTCCAGCCAAGTCTCCCATTAGGCCCTCGACTTTCCATGGACAGGTGAAATTGGCCTCATCTGTATCTGTCGTCAACACACGAGACAGCCATCGCCTGTCTTTCCCCAGCCTGAAAACTGCCACCACCTTTACTTGGTGTTACCTGATGAAGAGGAGGCCTCTGCATGTTCCCCAGACGGACCAGAAGGTCTCGGCCTACTCCACCTGGGCGGTGAGCCCCAACAACCCCAACCCACTGGGCCTGCCCACCAAAGTGGTGATGTCTCTCTTTGACTCCAAGCAGAACTCGAAAAAAATACACTACACAGAGGCCATAACGACCAGTATGAAGTCCGACATCTTGGCCTATTCAAGCAAGCTAAAAGACGTCATGCCGAAGGTCCTAATGCCTCAGAAAACTGAGAATAACAGCAAAGTGCAACCTGAGAGTCAGGTGAGCAGCGAGTCAGACAAGGATTCTTCCTCATCCAAAATAGAGCCACGGAGGGTCAAAATATTTGATGGAGGATTCAAATCTAACGAGGACTATGTCTATGTGCGTGGGCGTGGTCGTGGTAAATACATCTGTGAGGAGTGTGGGATCCGCTGCAAGAAGCCCAGCATGCTGCGTAAACACATCCGCACCCACTCTGATGTACGGCCCTATCACTGCACCCACTGCAACTTCTCCTTCAAGACTAAAGGGAATCTGACCAAGCATATGAAGTCCAAGGCTCACAGTAAGAAGTGCATGGAGATGGGGGTGTCTGCAGGCCTCGAGGACCATGATACAGAGGACTCAGGAGACCATAGCCAGGTTGGCAGTACAGACCGCCCAGATTCAGACGGAGAAGACTCGGAGGGCGCTGACGATGACAACGATGATGAcaatgaagaagaggaagaggacagcCAGGCTGAGTCGGGCCTGTCCACCAACCCCTCGGTCTCGGCCAGCCCCCAGCAcataccctcctccctccagGCTGAGCTCCCTCCCAGCTCCCTCCTGGCTCAGATGtccatccaccaccaccacccagctcccctgtccctcccccaGCTCCCCGCATCCGACTCCCACACCCACCACACCCACCACGCCTCAGACACAGAGTCCGTGCCCATGCTGAGCCCCGTCTCCCTGGTCAAGCAGATGTCAATCTCCGGAGGGTGCTCAAGCCCTGGCCCCCTACCCTACTCCCCACCCCCCCACACCTCCGACACTGAGTCGGTGCACATGATGAGCCCTGTCTCGCCGTGCAGGCAGATGTCCATCGACTACCCCGATGTTGACGTGCCCCCTAGTCCCCCCGTACCAGGCAAGGGCTGCTTCAAGCTCGGCCAGGATGACTCTTTGGCTCCTCCCACCCTACCAACGAGTGAGCCAGGTGTCCCTTTCGGGACAGACGTCAGCACTCAGACCGCCTCTTTCACCCCCCAGACTTCCTCCTACAGCCCCTGGCACTTTCCCTCCCAGGGCCCGACCCAAGGATCAGGGGCCACACAGGGGGGACACATGCACCTCTTCAGTCACCTGCCTCTGCACTCCCAGCAGCCCTCTTGCTCTTCCTACAGCATGGTCCCCGTGGGGGGCATCCAGCTGGTGCCAGCTGGCCTGCCAGCCTACTCCACCTTCGTGCCCATCCAGGCTGGCACTGTCCAGCTCACCATCCCTGCAGTGAGTGTCATCCACCGGAATACCAGTCCACTCCCGTTCCCCAAATTCTCTAACTCCCCCCAGCCTGAGGGCTCTGCCTTGACCCCCACCAACCAGCCCCTGGTGGTTCAGGAGCCCATCAGCAGTATCATGCCCTGCTTCCCCCTTGGGCAGGTCACCGGACTTCAGGCCCTTGGGGCCTCCCAGCAGACGCTGCAGTCCATGGGTCTGGAGACCCTCAACGTCATGGGACTGACCAGCTCAGGAGGCCTGACCTCCACTCAGCTGCTGTCCCAGCACGGCCTGACGCTCAACGCCACCATGGGCCTGCAGGCCCTGACTGCCAGCCCCAGCTCCCAGAGCAGCACGGGCCCCCACCAtcaccacacccaccacacacccATCCCCGGCCTGCAGATCCTCAACATTGCCCTGCCCGCACTCATCCCCTCGCTCAGCCCTCTCTCCGCCCTCAGTCCCCTCCCTGGACCCTCTGAGAGGAAGGGCAGCCCTGAGGCCCAAGGGGCCACCCGACTCTCCTCTCAGACTGAACTAGGACCCTTGGTCAGCTGTCCATCTGCTGCATCATCCCTTCCCACTGCCACCATGAGAGGAAGTCCCGCCCAGGAAATGACATCATCGGGCAGCAGACCCAGCAGCTCTGGGCACAGGAGCTCCGGAGGCTCTGATCACACGCAGACTCCCgggaaggaagggagggttaTAACATCTCTACCACAACCCTCCCCGGCTCCAGCTGCTGAGGGGGTTGTTGAGCGGGCAGGGGGAGCCAGTGAGCCTGTCATGCCTCGGAGGCAGTCGATGCTGTCACGGCAGCAGGTGACGGAAGACTTTATCGATGACTCAGCATCAAGCGATGACGAGGACCGACTGGTCATCGCCACCTGAAACCCCCAGTCGAATAGCCTGGTCAAATCAAACCGAATGCTGAGCTTACAATGGTGATCGCAGCATTCAATCTGGGTTACCAGGCTACCTATCGAAAAGCTCTTTCTTTGTTCTCTTTTTGTAATGCTTGTCActttctaagactgaaaacacTTCAGGGTGGGTTTGTTACTCTGCAAATCACCTTTCAAAGCACAGTTTCTGACATTCATATTGTATGTGCAATCATAAATGAtaattattattatgatgatgatgataatgatgaccAATCGTTTTTCTTTTTAAAAAATTTGTCAGCTCCAGACAATATCTTTTTGTACATGTTGTATAGACAATTGTGCCTTTTTGGAGTTACTTGTTTTAGGAACCTGTAAATAATACCTTAAAAATTCAGCAATGGCTTGTGTTTATTTCGATGACATGGAAGTGAAAATAGAGGATAACAATTTTATTTTGGAAGGTTTTATGTCAATCGTAAATTTCtggaaaaaataaatgtgttgtaCTGGTATATGTACATTTCTATGAATTTGGGGCATTGTTTCTGTGTACAGATGTTGTGTTCAACTATTTATTATATTCCATTTAGTGCCCATGATTATTCATAAATCCATAGGTATGTGTAATATGGTAGCTTTACATTGCGGTATCAATATTATTATCAACTGTATCAGTAAAACCTTGTTTACAAATGTACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2638892 lncRNA upstream 41280 21701705 ~ 21702152 (+) True G2306912
TU2638872 lncRNA upstream 68151 21674986 ~ 21675281 (+) True G2306892
TU2638870 lncRNA upstream 72043 21671151 ~ 21671389 (+) True G2306890
TU2638866 lncRNA upstream 76085 21667135 ~ 21667347 (+) True G2306886
TU2638830 lncRNA upstream 117154 21626078 ~ 21626278 (+) True G2306850
TU2639060 lncRNA downstream 220048 22049096 ~ 22050469 (+) True LOC118946490
TU2639832 lncRNA downstream 345945 22174993 ~ 22175406 (+) True G2307767
TU2639866 lncRNA downstream 397238 22226286 ~ 22230151 (+) True G2307792
TU2639852 lncRNA downstream 428088 22257136 ~ 22259964 (+) True G2307779
TU2639889 lncRNA downstream 441066 22270114 ~ 22272124 (+) True G2307812
XM_021560094.2 mRNA upstream 52731 21677669 ~ 21690701 (+) True tmem170b
XM_021560091.2 mRNA upstream 185167 21555375 ~ 21558265 (+) False LOC110488088
XM_021560090.2 mRNA upstream 195549 21535605 ~ 21547883 (+) True LOC110488087
XM_036971770.1 mRNA upstream 212840 21527584 ~ 21530592 (+) True LOC110489402
XM_021560084.2 mRNA upstream 228198 21513289 ~ 21515234 (+) True LOC110488083
XM_021560103.2 mRNA downstream 7260 21836308 ~ 21839826 (+) True edn1
XM_021560104.2 mRNA downstream 119336 21948384 ~ 21950989 (+) True LOC110488094
XR_005041343.1 mRNA downstream 220106 22049154 ~ 22050361 (+) False LOC118946490
XM_021560110.2 mRNA downstream 282982 22112030 ~ 22130041 (+) False LOC110488097
XM_021560109.2 mRNA downstream 294035 22123083 ~ 22130041 (+) True LOC110488097
TU2638805 other upstream 155998 21587088 ~ 21587434 (+) True G2306825
TU2638636 other upstream 419536 21320623 ~ 21323896 (+) True G2306688
TU2638628 other upstream 431554 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other upstream 431625 21307558 ~ 21311807 (+) True LOC110488072
TU2638087 other upstream 929134 20813189 ~ 20814298 (+) True G2306173
TU2639980 other downstream 576969 22406017 ~ 22416292 (+) True c32h5orf49
TU2640356 other downstream 775272 22604320 ~ 22604721 (+) True G2308224
TU2641501 other downstream 2150302 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 2150420 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other downstream 2150509 23979557 ~ 23980779 (+) False LOC110488133

Expression Profile