RNA id: XM_021560103.2


Basic Information

Item Value
RNA id XM_021560103.2
length 1806
RNA type mRNA
GC content 0.45
exon number 5
gene id edn1
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21836308 ~ 21839826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGGACAAAACTGTTTACACGCGACtgcaggggggagggaggaggtggtaaGTGCTTAGTATATAAAGGGCAGAAGGTGCACATGTGGAGGCACTGACAGAACCGTGCAAGTGGAATGCTTTTGCACTCCTTTGTGAACGTACCTTGTATGCGAACCTACGCAGTTGGCACCGTGTCGCTTTTTGCTGGCTTTTTGGAGCCTTTTCATTAAAAAGGGAATATTCCATTTTGTGAACAAGATTATTTTAACTGTACTAAAGAAATATAAAAAAATGGATTTTAGAATACTTTGCTCCATGTTGTCAATGATGTACTCTGGAATTTTACATGCGGTCTCATCCGTTCCTATGGAAGAGGATACAGCGGCTTCCACAACAGCCACCCCGGTGCCAGTGCACCACATCAGGAACAAGCGATGCTCCTGCGCGACGTTCCTGGACAAGGAGTGCGTTTACTTCTGTCACCTGGACATCATATGGGTCAACACGCCTGAGCGCGTGGTTTCCTACGGTCTGGGCAACGCTTCCAGAAAGAAGCGAGCCATCAAGAATCCCGCCATCTCCAAGCAGGACCCTCGCTGCAAGTGCGTCCATGAAGATGACAGCACATGTACAAACTTCTGTCAGCTTGACATTTACCTGAGATATGCTGCAGCAGCAGTAACGCCAGACACAGCGATCCACCCCGCCGTGGGCGCTGACTGTGCTGAGAGGCATCAGTGCAAACACAAGTTTGCAGCCAAAACGAGTAGGATTAAAAGGGTGAAATACAGAGACCAAAAAGCAATGGCCCCCTCAGCTCTTCAGGCCACAGTCAAAGCTCGCTTGGTGCTGGAGGAATTGATGGTGGGACAACAACACAGGGCACgagaagagagatgagaaggGATATGTCCACAtactctgtctcacacacagagagggcagagattcacctatctctctctatccacctgtCATTGGGGACTCATATGCTTTGGTCCCTCAAGATGCATTGGATACTCCACAGGAAGCCTGCTACTGGACCTCATGTTGGCTCAGTCACGGTGTGGGTCATTAAAGGGGGTGAATGGCAGTGATGGTGGGTGCAGTGTCAGAGAGATGCAGATGGTTGGAGACACATGCAGGAGAAATGCAATGAACTTGAGTCAACTTTATTGACACCACATCCTAAAGACAAAGATGGACACTTGTACTCCTGTGTACTGTTGACACACCTTTGGACTTCAGCAGCAACCCTCAAACAGAACTTCAGATCATAGCTAATAAATTGAATGGCTGAAACTTTACTCTATGCATGCCTCTGATTATCACTGGATTTGAGGGACAGCTACACAACAGCATCAGAAGCACTGTTGCTACTACAGTGTATCCTGTCCAAGGTTCTTGTGTCTGCTCTCTCAAGAAAACATTGGATTCATAGAAGATCACAAACTCATAGACTTATTGAATTGACTCTATGACCTGGCATAAGAAACACAGCTGATTGATTTCAGGCGTTATCACAGTTTGACTAAGTTTCACTACTTTTGACAACAGACCTTTCCAAATGATCTTATGGGTATCCATTAGAACTTTTGCGTTTTCTGATTATATTTGGTTCTATTTATTGCTGTCTGAGATTTCTCTATACATATTGTATAATAATTAATTTGTTTGCATTGTTCTGTCCctatgttttatttattcaatTTATTTATAGCCATATTGGCCCCGTCCATGTGATAATTGTATGTCATTTCTGTGAAATGCTTTTGTCGCCAAGATACATTTGGCAAAACTTAGGGAAATAAATTGTCACACTAA

Function

GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0001501 skeletal system development biological_process
GO:0009888 tissue development biological_process
GO:0009653 anatomical structure morphogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2638892 lncRNA upstream 134156 21701705 ~ 21702152 (+) True G2306912
TU2638872 lncRNA upstream 161027 21674986 ~ 21675281 (+) True G2306892
TU2638870 lncRNA upstream 164919 21671151 ~ 21671389 (+) True G2306890
TU2638866 lncRNA upstream 168961 21667135 ~ 21667347 (+) True G2306886
TU2638830 lncRNA upstream 210030 21626078 ~ 21626278 (+) True G2306850
TU2639060 lncRNA downstream 209270 22049096 ~ 22050469 (+) True LOC118946490
TU2639832 lncRNA downstream 335167 22174993 ~ 22175406 (+) True G2307767
TU2639866 lncRNA downstream 386460 22226286 ~ 22230151 (+) True G2307792
TU2639852 lncRNA downstream 417310 22257136 ~ 22259964 (+) True G2307779
TU2639889 lncRNA downstream 430288 22270114 ~ 22272124 (+) True G2307812
XM_021560098.2 mRNA upstream 7260 21743047 ~ 21829048 (+) False hivep1
XM_021560097.2 mRNA upstream 7260 21743052 ~ 21829048 (+) False hivep1
XM_021560095.2 mRNA upstream 7260 21743053 ~ 21829048 (+) False hivep1
XM_021560096.2 mRNA upstream 7260 21743432 ~ 21829048 (+) False hivep1
XM_021560099.2 mRNA upstream 7260 21743435 ~ 21829048 (+) False hivep1
XM_021560104.2 mRNA downstream 108558 21948384 ~ 21950989 (+) True LOC110488094
XR_005041343.1 mRNA downstream 209328 22049154 ~ 22050361 (+) False LOC118946490
XM_021560110.2 mRNA downstream 272204 22112030 ~ 22130041 (+) False LOC110488097
XM_021560109.2 mRNA downstream 283257 22123083 ~ 22130041 (+) True LOC110488097
XM_021560111.2 mRNA downstream 293451 22133277 ~ 22161691 (+) False LOC110488098
TU2638805 other upstream 248874 21587088 ~ 21587434 (+) True G2306825
TU2638636 other upstream 512412 21320623 ~ 21323896 (+) True G2306688
TU2638628 other upstream 524430 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other upstream 524501 21307558 ~ 21311807 (+) True LOC110488072
TU2638087 other upstream 1022010 20813189 ~ 20814298 (+) True G2306173
TU2639980 other downstream 566191 22406017 ~ 22416292 (+) True c32h5orf49
TU2640356 other downstream 764494 22604320 ~ 22604721 (+) True G2308224
TU2641501 other downstream 2139524 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 2139642 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other downstream 2139731 23979557 ~ 23980779 (+) False LOC110488133

Expression Profile