RNA id: XM_021560110.2


Basic Information

Item Value
RNA id XM_021560110.2
length 5211
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC110488097
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 22112030 ~ 22130041 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATGGCAGTACTTATACTGTTCTTCTATCGGTCGTGCAATGATGTCTGAGACGGTGTTCGctgtttgcagtaacttctttgtgGCTGTAATGTTGCAAACTGACCTGGCAGTTTAACCATTAAGGATTACCACTTTCACAGAGGACTTGGTGAACAGAAAGATTAAAAGTCAGCAACGTCCATGTGTGAACTACACTTTTTTCAATGATTCTCTAatggccagtttcccagacacagattaagcctaatctTAGACTAAGAAGAACTTTCAATGGTGAATCTCCTTTGAACATGATTTTTAGGCTTACATTCTGTTTTAGGTACATTCTGTTACAAGAGCCCACTCAACGAACCACCATGGTCAAATACTATGTACTATATTCAATACATAAAATAATGCAAACATttacatttcatttttttgtcaTGTTCTTAACCGCTGGGCTACCTACCGCCTGCATACACTTGTATATCACATTTCACAACACGTTTACAATGATTTCACATATTCAGTGTATTAGATTAGCACTAACaaagaaataaataattatttaccAATTAGGTTTTCCTCATTGAAAAGGGCCTTACCGCGTCAATGACCCAGTTGCATAGAACTCACCATAGAACTACAGTGAATGGCAGCCAGGTGTGCCCACAGACCTAAGGCTGTGTCCCAAAAGGCaatctattccctacatagtgcactacttttgaccagtgcatgGTCCAAAAGTAGTGTCATATGAAGGGAATAGGCtcccatttgggaagcagacctCGTTTCCTGACCAACATTCATTGTCCTACTGTATCTATTCACGTATGACCTCAGGCAGTAAAATATATCAGAACTGTAACAGTGTTCCTAAATAGATCACTTTACTTCCTGGATTACTTCAGAGTCATTAAATAGAaagactatactatactatactatactatagggGGATGGagacaccaccatcatcaccatcattagAGTAATATCCCCCAATTAAAGGTGGATTTAAAATCCTGGTGTTGTACTGCTCAGGTGACTCAGGTGCGCTCtagtgtcatagagaccaggcctgagtcccaaatggccccctatttcctatatagtgcactacctttgacctggGCCCTGGTAAacaaaaaaagtagtgcactgtgatgggaatagggtgcatttagGATGCAGACTAGGTTCCCTCGGGCAGGACTCCCATACTCACGGGAACAGTATCCTGACACCTGCTATTGTTTTGTTTGTGGTTCTCTGGTAGATAAAGGAACAGGTGAAGGGGGGTTGAGAGGGGGACAGGTGCGTCACACTTCTCTGGTTTCGCCTCTTTGGTTTCATCAGTTCAGCCAGTActgcctgggagagagggagacacacagagagagagagagagcgagagagaaagagagagaaagatagggaaGTGCGATGAAGGAAAGGATTTGCTGGTCTTGTGAATTGCAGAGTCAAATTCTTTCAAACGGTgctgcagagagatagagagggggatattactgagagagaggagctggagacAAGATTACATCATTCAtacgcacacagagacatacactgGAATATTACtgcttcagacacacacacagagaaacagacacaaatacacaaaaCACACTGCACCTAAATAGAAGAGGACATGAAGACTGGCAAGAAATCCTTCATAGCTTTCATCAAGGAGAGGAAAATTGGACTTAACGACTTCATATCGAGGCTGGTGTCAAACCCacatatgtgtcaacaCTCTGAAGTTGACTTCCTCAAGATCGATGAGAACCAGAATGAGAAGCTGGACAATGCTGAGCTCTTAAATCCGATGCTACTGACCTCCCCCAGAAGCTCACTAGCTGAAGAGCTGGCGATCAAACCATGTGATTTCGACTACCTGAAAATCATCGGCAAAGGGAGCTTTGGGAAGGTGCTGCTGGCTCGACACAGGGAGAGCAACGAGTATTACGCCGTCAAGGTTCTACAGAAGAAAATCATCTTGAAGAAGAAAGAGCAAAAGCATATAATGGCGGAACGAAGTGTCCTGATGAAGAATATCAAACATCCTTTCCTGGTGGGGCTGCACTATTCCTTCCAGACTACTGACAAGCTGTACTTTGTGCTTGACTACGTGAATGGAGGAGAGCTGTTCTatcatctacagagagagagggtgttccTAGAACCCAGAGCCAGGTTCTACGCTGCAGAGATCGCCAGTGCTCTGGGATACCTCCATTCCCTGCATATTGTTTACAGAGATCTGAAGCCTGAGAATATCCTGCTAGACTCTGCGGGCCACATCGTCCTGACAGACTTTGGCCTTTGCAAAGAGGGCCTTGCACCCACTGGGACCACCACCACCTTCTGTGGAACCCCGGAGTATCTGGCCCCCGAGGTGCTGCAGAAGCAGGCATACGACCGAACCGTGGATTGGTGGTGCCTGGGATCCGTGCTTTACGAGATGCTCTATGGACTGCCCCCCTTCTACAGCCGCAACACAGCTGAGATGTACAACAATATCCTGAACAAGCCTCTTGTACTGAAGCCCAACGTGTCCAACGCAGGCAGAGAACTGTTGGAGGGGCTCCTGCAAAAGGACCGCACTAAGAGGCTGGGAGTGAAAGATGATTTTATGGAACTGAAGTTCCACACCTTCTTTTCACCCATCAACTGGGATGACCTGATGGCAAGGAACATCACACCACCCTACATTCCCTCAGTGAGCGGGCCTACGGACCTCAGGCACTTTGACCCAGAGTTCACCCACCTCCCTGTGACCTCATCTCTGTGCAACACGGACGGCCTGCTGGTGACTAGCAGCATCAAGGAGGCAGCTGGAGCCTTCCCAGGCTTCTCCTATGGACCCGCTGACAGCTTCATGTGAAGGACTCCTCTATCCACCTCGATCCTCATCCCCTCCACAGTCGAAAGGGGgaatagaaacagacaaacactGCCTGGGACAATGACCACGCACTGTTAGAGCAGTTTAGGAGGTTTGCATGGCCTGCTAATGGAAATCCTGAGTGACATGCCTAAGAGGCATGAAAAGGGGGTCCAGAAAATCCAGATCTTGTTGGATTGTTGCATGAGGGGTGTAGATTGCATGGGACTCTTATCTTCAACACCAATggccctacctacccacccaccccaAAACTGATCCAAAGTGTGCCAAGGTGGGAAACAGAGATTATGTTTTGTACTACAGGGAGAAAGGACATTTCTCTCAAATCAATGTGGACTACCACCACTGTCGGAGATAAGGATGAAGTGCCTGAAGTTTCAAGGCAGCGAGAACAGTACTGTACCCACAGAGCTAGGCAAGAAGAGCCGGCTGCATCAAACCCGCAGACTTTCCAGTCTGTTTGGACTTATGACCCTGGCGCTAGCTGTAGAGAGGTCCATGCCTTCCTAATCTTTCTGCATTTATTGAAGATGTACATGTCTGTTCGAGTCACAATGCATTTGTTATCTGTTTGTTATGTGAATGGTCGATTGCACTTGAGGAAACAAGGGTAAAGAAAATGTTTGCGTTGCTTAAGCATCCACTCTGTCTCTTGGTCAACTGCATATCTTTTCACCCACAAAATCATATCTCAAACAAGTAGGAAAACACCAGAATGGATAATGAAATTTCAACAATTTTGTTTTGGACCAAATAGGGTACTATGGTACCATCTGAACCAAATTCTACTGGTGGATCATTTTCGTCCAAATACTGATGATAATAATAGAGCAAATGAATGCCGATGCATAGAAAGCAGACACGGAATATGTTATTTTACAAGAAATCTGCATGTCATGGCATAGTAATTTAATTGTAATCTTACCAAATAATGCATTGGTTTACTATTTTAATGGTACTGTtcattttactacagtatttcagtTTGAGAAATTACAAAGTACTccttttaaaaacacattttccacTTGAATCTTAACAAAAACCATAGTAATATATTAAGAAGCTCCAAATGTTTAACTATTTATACTCCCTATGTGAACAAAATGTTCTTGCCTTTGTTCTTCTAATACCTGCACTTTTACCCCCCTGAGACTGTGTTGACATATTGTGTTGACATAAATGTTTGTAGActcattaatatattttttatcatAAATACAGAAAATGGAGTATACAGTTTTACCAGCAATAATAGGTCTTCTGCAGTAATAACACATTATATCAATCATTGTTATTCTTGCGAGTGAAAGTGATTGCTGTTTTGCTGGCAAAACACTCTAGAGAATCCATTATATTGTTATGTATATCCATTTGCATTGTGTACAGAACTCCTGCTAGATTGATATAGAAAGGAACTGTACATGCATTTCGTTTTGTAAAGTGTGCCTGTCTGTTCCAGCCATGTTACAGTAGGATAGGTAGGCCTGATCCATTTGTATCTATTTCTTCCGTTATCCTCATGGTCTGGAGACCACGACCTGAAAAGCTGTGCTGCTGCAATGACAAGAGCTTAGACTGAAATTACTCTTTGTAAACAGCGCTAGCGCCGTTCATTTACTGATGGCCCTAAATAGTGCAATAACATCGCAGGCTTGGCAAGAATCACCTTTAATTGATCAGAGATATATTTTTTCCATTAGTCATCATGCCTTAAAAAAATCATCCTCTAAAATGACAGATTATGGAAGATCACAGTGTTTACCAGATGTCAGTAgtcaaaaaaaatttaaaaaaaagggcATGaactgattttattttatttggcctTAACAGATATAACCTTGTAATGGCTGACAGAACAAATATCTATTCATGATGAAAAtcacgtttttttttatttttatatagtgTAAATTGATAAAGGACTGACACTTAATTTGATATGTCACTTTAACTTCCTTGATCCTACCAAGTCTGAAAATGTTGGTCTGCAAAGAAGTATTGACTCTGCAGTGAATATCTACAGACCATTCTGTGGTACCGCTTCCTTCTTGTAGAAAATTACAAACAACGCAATACAGTTCTAGGTGATTTTCTTCCATATTTGGAAGCTTTACATAtgttatttgtttttgtattttatttctccatatatatttatttacGTCATGacacaatgtactgtatgtttaaaGACCAGAGGACAAATTCCTAGTATTGATAAATTAAAATATTGAATTGTTATCTGTTCAAAATggtaaataaaatgtattgaccAAATTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2639060 lncRNA upstream 61561 22049096 ~ 22050469 (+) True LOC118946490
TU2638892 lncRNA upstream 409878 21701705 ~ 21702152 (+) True G2306912
TU2638872 lncRNA upstream 436749 21674986 ~ 21675281 (+) True G2306892
TU2638870 lncRNA upstream 440641 21671151 ~ 21671389 (+) True G2306890
TU2638866 lncRNA upstream 444683 21667135 ~ 21667347 (+) True G2306886
TU2639832 lncRNA downstream 44952 22174993 ~ 22175406 (+) True G2307767
TU2639866 lncRNA downstream 96245 22226286 ~ 22230151 (+) True G2307792
TU2639852 lncRNA downstream 127095 22257136 ~ 22259964 (+) True G2307779
TU2639889 lncRNA downstream 140073 22270114 ~ 22272124 (+) True G2307812
TU2639908 lncRNA downstream 158930 22288971 ~ 22296379 (+) True G2307829
XR_005041343.1 mRNA upstream 61669 22049154 ~ 22050361 (+) False LOC118946490
XM_021560104.2 mRNA upstream 161041 21948384 ~ 21950989 (+) True LOC110488094
XM_021560103.2 mRNA upstream 272204 21836308 ~ 21839826 (+) True edn1
XM_021560099.2 mRNA upstream 282982 21743435 ~ 21829048 (+) False hivep1
XM_021560111.2 mRNA downstream 3236 22133277 ~ 22161691 (+) False LOC110488098
XM_021560113.2 mRNA downstream 3236 22133277 ~ 22161691 (+) False LOC110488098
XM_021560114.2 mRNA downstream 3237 22133278 ~ 22161691 (+) False LOC110488098
XM_021560112.2 mRNA downstream 3252 22133293 ~ 22161691 (+) True LOC110488098
XM_036971813.1 mRNA downstream 61655 22191696 ~ 22222102 (+) False LOC110488101
TU2638805 other upstream 524596 21587088 ~ 21587434 (+) True G2306825
TU2638636 other upstream 788134 21320623 ~ 21323896 (+) True G2306688
TU2638628 other upstream 800152 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other upstream 800223 21307558 ~ 21311807 (+) True LOC110488072
TU2638087 other upstream 1297732 20813189 ~ 20814298 (+) True G2306173
TU2639980 other downstream 275976 22406017 ~ 22416292 (+) True c32h5orf49
TU2640356 other downstream 474279 22604320 ~ 22604721 (+) True G2308224
TU2641501 other downstream 1849309 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 1849427 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other downstream 1849516 23979557 ~ 23980779 (+) False LOC110488133

Expression Profile