RNA id: XM_021560111.2


Basic Information

Item Value
RNA id XM_021560111.2
length 5307
RNA type mRNA
GC content 0.46
exon number 18
gene id LOC110488098
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 22133277 ~ 22161691 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGACGTCCCAAAGATCCCGGATTGCAAGGACCTTGCACACGGCGTAACATGAATAATCAAAACTTCCTGCTAAATAGTGGTCGAACAGACAAAGCGGTGTGGATTCAGTACGAAGATATTCGACTAAAGCAAACATACATTACACCAATGGGTCCGGACAGCCTCCCCAGACGAAGAGAGTGAAGATCTGTCAGGAGGACGTGGCTCAGCAGACATGGATGACTTGCAGGATCTGCCTGAACTGCCGATCAAGAAGGCAAGGCATGAGCTCAACGTTGGACTGGATAAAGAGCCACGGGGATTGGGTGGTGATGACCAGAGCCCCCCTACTCTCTTGGGCTCAGGAGATCAGGATGACTCCTTCTCCTTGTCTAATGCCCAGCTTGATGGAGGAAACAGGGACCAGTCTGGTTCAGACAGGGGAGGAGCAGGGCCTCAGGCTTGTGACGAGTCCATgaacccctacacacacactgCGGTGACCTGCAAAGAGCTCACCATGACAACAGCCTCTGAATATAACTCCCACATCTACCATGGAAGCAGcccagccgTCACGTCGTACAGCAGCCAGGTGGCCTTCCCTCCTCTGACCCAGTCCACTGTGTACACCGCCTTCCCCCAGGCAGGACAGACCTATGGCCTCCCACCATTCGgTGCTATGTGGCCAGGCGTTAAGACAGAGACAGGGCTGCCTGATGCAGTGCCTTCTGTTGGCCAGCCTGGGTTTCTCAGCTTCAGCTCTGCATATACCTCAACCCAGCCAGGCCAGGTGCACTATTCATACCCCAGCCAAGGCTCCAGTTTCACTACATCCAGTGTGTACACTAACATCCCCTCAGCTACCACGGCTACACCTACAGTGACTCACCAGGAGTTCAGCAGCTATAACTCTCTGGGCCAGGCCCAGTTCCCTCAGTACTACGCCCCGCCTCCTAGCTACTTGCTCGCCGGCCAGCCCAATAGCGAAGGGAATGGATCCAGTGTGGGTGTGGCTGGCTATCCAGCCATCAAGACGGAGGGCAGTGCTTCCGCTGGACTGCCCAGCACTACAGATGCATCTCCACGTGAGAACCTCCCGACCGGAGTGGCCCTCCCGGCAGGCGTGGCTCTCCCCACGGGGGCCCGGGACCAGGATGAGGCAGGGAGGAGGAACCCTGCTGGCAAGGCCAAGGGGAAGGCCAAGAAATCAGACAGCAACCAGCCCACTGACAACGACCTTGAGAGAATCTTTCTCTGGGATCTGGATGAGACGATCATCATTTTCCACTCTCTGCTCACCGGCTCCTTCGCTCAGAAGTTTGGCAAGGACCCTGCCACAGTACTGAACCTGGGCCTTCAGATGGAGGAGCTGATCTTTGAGCTGGCAGACACACACCTGTTTTTCAATGACCTGGAGGAATGTGACCAGGTCCATGTTGAAGACATGGCTTCTGATGACAATGGACAGGATCTGAGcaCCTATAACTTCCTGGCGGACGGCTTCAACGGCCCCAGTGGTGGAGGGGCCCCAGGGGCCACTACTggagtccagggtggagtggagtggatgaGGAAACTGGCCTTCCGCTACCGCCGTCTAAAGGACCTCTACAACGGATACAAATGCAATGTGGGAGgcCTGCTGAGTCCCATGAAGAGGGAGCTGCTCCTTCGACTGCAGTCTGAGATGGAAAATGTGACGGACGCCTGGCTCAGTACGGCACTCAAATCCTTGCTGCTCATCCAGTCCAGGTCAGCACAAGGTAAGTGTATGAATGTCCTGGTGACGACCACCCAGCTGGTGCCTGCTCTGGCCAAGGTGCTGCTCTACGGCCTGGGGGACGTCTTCCCCATAGAGAACATCTACAGTGCCACCAAGATAGGGAAAGAGAGCTGCTTTGAGCGCATCGTCTCTCGCTTTGGGAAGAAGGTGACCTATGTGGTGGTAGGAGATGGCCGTGATGAGGAATTTGCAGCAAAACAGCACAACATGCCTTTCTGGCGTATCTCCACCCACGGGGACCTAGTATCCCTGCACCAAGCTCTGGAGCTAGACTTCTTGTAGAGTGGAAGGGATAGAGGTCTGACACAGAGGGAAACAGTCAGTCACACCACTGTTCGCTTGTGGAGTGACTTattttctttattattattaGGTACTTGGCTCCACCCCAGCCctctgaaatacacacacacacacacctgctggccCTAGTGAGTTACTCTTGCCCCATGTGATGGCCATGGACTGAACTGAGTTGGACTTGGGGATGGCAGTGGTTGGGAAGCAGACTGGACAGATATACTCTCTGATGCAGGGCTCCTGCCCAGCAGCACTCTCCCTATGGCAGCTATCCTGGCACTGGGGCACAGCAGTCAGAGAGGACACAACTAAAGGGAAGAAGACAAACCTCTGGCTCCACAACCCACAGGCTGTTGTTCCTCTGGGTTCATCCcaaatgacagcctattccctatgcagtgcactacttttgactaagtAGTGACTATAtatggaaaagggtgccatttgggatgcacactgtCTCTCATTCGTGGATTGACCAAAGCAAAGGTCTGCAGCACTGTCGGGCATCACGGACGGACGCTTTGGATTGTTTTAGAGCCCTCGGTAGCTATACATGAAAGGATAATGTCACAAAATGAATTATTTTTCTAATTTTGGGGTTATTTTGCACTCATTCCAAAGCTTGAAAACAGGATTCAATGTTACTGAGGCAGCATTGATTGGGGTTGGGAATTGTTTTAGTTTTTCTAAGCATATGATGAGATGGCTACTTAGGAATGACCTTCAATTGCCTTCTGGATGTAACCTTTCTACTAGTTATACTCTAGTACTGACAATGTCCTCCATGGAGATAGAATGTTGTGCTCATTATAAAACCACCCTTCTCTCAGCTGTCCCGACCTCTCCACTGTGTCAGACTTCAACAGCCTAACAGTCTTCTGTGGTCTTTTTACATAACCTGATGTGTGGCAAAGACAATGACTCAATGAAGAACCTAGCCTGTATTTCACTGCATGATATCTACGGACCCCAGGTTGCTGTATATTATTACCTAAGATAAGCCAAACCAGGCCTTTCTGTAAATGAACTTTAAAAGACTGAGGATGGGCCTTCAAAACCATGTGTAATTTCTTCAGCATTGTGCTGAAGTTCAATGTGTGTACATGTATACATAACCTTTTAGAGGCTGTCCCCACTGGGCTAACTGTTCCTCAGAGCACAGCCCTAAGTGTCCTTGAATTCCTGCAGAGGGACTTAAACTTGACaaatagcatttaaaagcagtttgCTGAAAGGAATGGCAAATGGCACAATCCAATCACATGTTTAAGATACAGTGCAattgttgttattgttcaatACTGGAAATTATGTTAGACCAAGTCACAGGTTTGTCTGGTCAATTTGGTCCTGATTACCTCACATGGCAGATATTTTCCATCACAAAGATCAACTGCTTGAGTCATTGATAAATGGAAATGTGTGTAGGTCGCAATTGTAAAATCAATCTTTAGCTGATTTGCATGGTGCAACCGCAGATACCATTATTTCAATGTGTTGGGTAACTTACCAAAATTATGTGTTGATTTATTTCCCAAGTGTTTCCAAATACCACAGATGTTCCTATCGTCACATTTTGAATAGAGAAACGGCAGCATACAAAGATATGTCCCCAAATTGGTCATTCATCTGTGAACTAGCTGGGGTGCCCAAAAAATATACAGCCGCTGTCTGTTTGCAGTATAGTCAGTCGCTCTACCTTCATCATTATACAtattgtggggggggggtgaccgTGCAATACATTTCTGGTCAGTGGTAATGGTATGCCTGTTATTAACTGGTCTATATTTCAAGGGACATTTTGTTGCCGCATGTAGCTAGCTGGTCAAGAGAGGTGGTTAGAGGGTTGATATTATTAAACCCTGGTCTGTGTGAGATTATGACTAAACAATACTGAGCCTGAAGAAGATTTGGCCATTTTACACACCCCTGCAGCTTGACcgttaagaatgtgttctttgtGTATTTGTTTGCATCTTTCTAGAGTGTCTTGTACATATTTGTATTGTGCCTTTTTAGCCATCTATATTGTATATGAATATATCATCTCTAAGGGAAATACTTAAGTTGTGTTAAATGCATTTATCAAACATGGTTGTTGTTACACGTTAGTTTAAGTGTTATTTTACTActcatcttttttttttaccgtcATTAATCGGTGCTGAAATCTTTTATTTGTAACTATCAGTAGCACTGAAAAGCTTACTGTATGTGAATAATGTCTTTTTTTCCTTTTGAATACGTTTTTTCTTGTTTTGATTGTCCTGCCGATGACAAATGTTACAGCGGAAATTCTCTCCTTTTAAAGACGATTCGCAGCTTTGTTCACTAAGTCATCGCATCCTTCCCTTTGTTGAAAACTGAATCCCAATGCTGTCATGTAGCATTTTCTGAGTCGCTGTGACTGGCTTTTACCGCTTAGACAATCAAATCTGTATCACATGGTACTTTGAATGGTGCCCAGATCCACCGCCTGCGGTGAAGCATGTATATAGACTTGCAGTATGTTTGGTGTATGTTCTCCTAAAACAGTACATGTTACTACCTAATGGAGTTGAGAGGAAATGGATGCATTGTAAAATGATGAATTAGATCCTTTAGAATGGAAGGGTGTCATGGACATGACATTTTGTGAAGTTGACACACATTTGGAAGTCAGCATACCCAAACCAAAATCCCTTTTATTGTTCAACTGTTCATTAGATCATCTTTAGTTTTGTTTGCCTTTCACCCTTTTGATTGGTATGATTTAGTTTGTTTTATCTTAGGTGTTTACGGTGCATGTATTTCTATCAGTGATGGTTTCTGATTTAAAGTACTCTGTTGCTAAAAAAAGTTGATTGTTAAAAAAAAAGCTGTGTCTGCTTTTTACATTTCCCTTGGATTTGTGTTGAAGACTAAGAACTATGTACAATTTTATAAGTGCATTTTGACAAGTCTCGGTTGGCTGTCATGTAGTGATTTACATTTCAAATGCAAGGAGCTATGAAGGCACAGCTTTGTAGGGACATATCTGGCTCAACTTGATCATGTTATTTCTTCAACACTCAGCTAGTGTGACTATCTTCTGTAGAAAAAAAGCCTTGACGATAACATGTAAGGGACGTGTTTTCCCACCCCACTTTTTTTTGTCTGGGACCAGAACACTGTTGAAGGCCCAATAAGGTTGTCCTGTGTATAATAACACTCAAGGcaattgtaaatacaaataaaatgactTTGAAAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2639060 lncRNA upstream 82808 22049096 ~ 22050469 (+) True LOC118946490
TU2638892 lncRNA upstream 431125 21701705 ~ 21702152 (+) True G2306912
TU2638872 lncRNA upstream 457996 21674986 ~ 21675281 (+) True G2306892
TU2638870 lncRNA upstream 461888 21671151 ~ 21671389 (+) True G2306890
TU2638866 lncRNA upstream 465930 21667135 ~ 21667347 (+) True G2306886
TU2639832 lncRNA downstream 13302 22174993 ~ 22175406 (+) True G2307767
TU2639866 lncRNA downstream 64595 22226286 ~ 22230151 (+) True G2307792
TU2639852 lncRNA downstream 95445 22257136 ~ 22259964 (+) True G2307779
TU2639889 lncRNA downstream 108423 22270114 ~ 22272124 (+) True G2307812
TU2639908 lncRNA downstream 127280 22288971 ~ 22296379 (+) True G2307829
XM_021560110.2 mRNA upstream 3236 22112030 ~ 22130041 (+) False LOC110488097
XM_021560109.2 mRNA upstream 3236 22123083 ~ 22130041 (+) True LOC110488097
XR_005041343.1 mRNA upstream 82916 22049154 ~ 22050361 (+) False LOC118946490
XM_021560104.2 mRNA upstream 182288 21948384 ~ 21950989 (+) True LOC110488094
XM_021560103.2 mRNA upstream 293451 21836308 ~ 21839826 (+) True edn1
XM_036971813.1 mRNA downstream 30005 22191696 ~ 22222102 (+) False LOC110488101
XM_021560119.2 mRNA downstream 30006 22191697 ~ 22194477 (+) True LOC110488101
XM_021560123.2 mRNA downstream 45233 22206924 ~ 22210469 (+) True LOC110488103
XM_036971812.1 mRNA downstream 52863 22214554 ~ 22222102 (+) False LOC110488102
XM_021560120.2 mRNA downstream 53211 22214902 ~ 22222102 (+) False LOC110488102
TU2638805 other upstream 545843 21587088 ~ 21587434 (+) True G2306825
TU2638636 other upstream 809381 21320623 ~ 21323896 (+) True G2306688
TU2638628 other upstream 821399 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other upstream 821470 21307558 ~ 21311807 (+) True LOC110488072
TU2638087 other upstream 1318979 20813189 ~ 20814298 (+) True G2306173
TU2639980 other downstream 244326 22406017 ~ 22416292 (+) True c32h5orf49
TU2640356 other downstream 442629 22604320 ~ 22604721 (+) True G2308224
TU2641501 other downstream 1817659 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 1817777 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other downstream 1817866 23979557 ~ 23980779 (+) False LOC110488133

Expression Profile