RNA id: XM_021560151.2


Basic Information

Item Value
RNA id XM_021560151.2
length 896
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110488122
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 23012552 ~ 23017016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCTTGGGGCCGGTGTATAAGAGCATGTCCAGGTGATAGAGAAGGGACACGGCAGTGCGAGTAGCAGCAGAGAAAAGGAGACTTACAAAGGTGCCACGGAGAACAGGTATTAATCATGATCCGAGGTCTGCTGTCGGTGTTGTTTGTCCTTGTGGCCGTAGCTGTGTCTTCATCTTTGGCCAAGCCTGAGAAGAACATTGCCAAGAGGGGGAAGAGGATCCCTCAGACTCTCTCTAGAGGCTGGGGTGATCAGCTGATCTGGGCTCAAACCTATGAGGAGGCTCTGTACTGGGCCAGGGCACAGAACAAGCCTCTGATGGTCATCTTTCACCTGGAGGACTGTCCCCACAGCGCATCCATGAAGAAGGCCTTCGCTGAAGACAAGGACATCCAGAAGGTACTTGATGAAGACTTCATCATTCTCAATCTGGTGTATGAAACCACAGACAAGCATCTCTCCCCTGATGGCCAGTATGTCCCCAGAATCATCTTTGTCGaTCCCTCTATGACAGTGAGAGCTGACATCACAGGACGCTACTCCAACCGCATGTACGCCTATGAGCCTTCTGACACCCAACTCTTGTTGAGCAACATGCAGAAGGCCAAGAAGCTGCTGAAGACTGAGTTGTAAGCACTGACAATGCATGTGACCCGTTGACCTTTGCCTGTGACTTCAGAGGTTTTCTGAACATTCTCAGAATGATCTCTGGAGCCTAGGAGTCAGCCAGTGGGATACTGTCACCATGTAAACCTAAGCACTGGAAAAAACTAGTCTTCACTTTCACAAACTAATttaaatgttttggggggattttCCCTGAAACTCTGTCTACATTTGTAATGTATTGCTGTACATCTAAGATGTATTTTTATTAAATATAGTGCAATTCTTAAA

Function

GO: NA

KEGG:

id description
K20356 AGR2; anterior gradient protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2640632 lncRNA upstream 25945 22985142 ~ 22986623 (+) True LOC110488118
TU2640683 lncRNA upstream 99542 22911533 ~ 22913026 (+) True G2308517
TU2640624 lncRNA upstream 160237 22851746 ~ 22852331 (+) True G2308467
TU2640567 lncRNA upstream 249862 22762394 ~ 22762706 (+) True G2308413
TU2640423 lncRNA upstream 288154 22719598 ~ 22724414 (+) True G2308287
TU2640718 lncRNA downstream 12030 23029046 ~ 23029589 (+) True G2308550
TU2640733 lncRNA downstream 27579 23044595 ~ 23045366 (+) False G2308563
TU2640734 lncRNA downstream 27579 23044595 ~ 23045366 (+) True G2308563
TU2640735 lncRNA downstream 29209 23046225 ~ 23047474 (+) True G2308564
TU2640736 lncRNA downstream 31530 23048546 ~ 23051189 (+) True G2308565
XM_036970698.1 mRNA upstream 6670 22991479 ~ 23005898 (+) False LOC110488120
XR_005041391.1 mRNA downstream 45081 23062097 ~ 23069745 (+) False LOC110489407
XM_036971658.1 mRNA downstream 45184 23062200 ~ 23069745 (+) False LOC110489407
XM_036971659.1 mRNA downstream 45197 23062213 ~ 23069079 (+) False LOC110489407
XR_005041392.1 mRNA downstream 45985 23063001 ~ 23069745 (+) False LOC110489407
XM_021560154.2 mRNA downstream 55501 23072517 ~ 23076040 (+) False LOC110488124
TU2640356 other upstream 407847 22604320 ~ 22604721 (+) True G2308224
TU2639980 other upstream 596276 22406017 ~ 22416292 (+) True c32h5orf49
TU2638805 other upstream 1425134 21587088 ~ 21587434 (+) True G2306825
TU2638636 other upstream 1688672 21320623 ~ 21323896 (+) True G2306688
TU2638627 other upstream 1700761 21307558 ~ 21311807 (+) True LOC110488072
TU2641501 other downstream 962334 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 962452 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other downstream 962541 23979557 ~ 23980779 (+) False LOC110488133
TU2641635 other downstream 1134671 24151687 ~ 24157436 (+) True LOC110488142
TU2644105 other downstream 2718178 25735194 ~ 25736847 (+) True G2311528

Expression Profile