RNA id: XR_005041391.1


Basic Information

Item Value
RNA id XR_005041391.1
length 1583
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110489407
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 23062097 ~ 23069768 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcttccctacatctgtcactccccttggttctttcctcaggtgttatggACTTTGTTTTCATGTCGCCTGTtgaaggggagggatggagatggtttTCCTCAGTACcaggagaagttcattagagaCTGCATCAGGAAGTTTCCCTGCTGTGAAGCCGCACTGCTACAGCAGCAGGTCATGAGCATCGCAACAGTGGAGATCGGTAACGACCAGACAGCGTTCTCAGTATTAACCCAGGCTCTCATGGGTAAGATGACCTTCATAGATGCTGATTTCTGCACTacgtgtggagagagaggggcagagaagaGATGTTCCCTCTGCAACATGGTGACTTACTGTGGCCTGATTTGTCAGCGACTCCACTGCCCCACCCATAAGATCTGTAGAGGACTGCAGGAGAAGGATACCCCGAGACTGAGGGAGCACTGTGACGAGGAGAGTGACATGGTGAAGGAGACAGCCAGCTTCCTGGCAGAGCTGCGTTTTTAAGGCAGAGGAGCATTGCGTCGTTAGGGTGTCCCAGTCCCTCAGCGCCAGACCAGCTAAACTGTCCCTCCACATCCTCAGAGGGACCACTGTCCTGCCACCAGGAATGAGAAGGACTGCTGGTGTTCTTTTCTACTGGGTAGTTAATTGATTCATTGATGAAATGTTACTGATTGGCCAGAGTTCAGTGAAATTAATAATGAAGTTATATTGAACTGAATTGATTCCATTCACTTGGTGTATGAGGTCTGAATCAATCCCTGATTTAAAGGAGAATGATGAAAATCAGCATTATTACTGATTGGCCAGGATGTCCAGATTGAGAGAAAGGGGAATGATGAAAATCAGCATTATTACTGATTGGCCAGGATGTCCAGattgagagaaaggggagagtgaGGATGAATGCTTTATTCACCAAGCAGCTGGACTGGAGTTTAAGGAAGGACTGTTACTATGGACCCAATGAGGTCTATTCTGTTTAGAATAGGGGAGACTGAAGTATTCAGGGTGTGTATATGATGCACAATAGCATATTGggtgcgtttacacaggcagcccaactcTGATCTTTTGCCCCCCAAACATATTTTGACCAGTCAGATCAGATCTTTTGCTGAAAATTGGGCAAAAGATAAGAATTGGACTGCCAGTGTAAAAACAGCCATTGAGGTGTAGTTGTATTGGCTCTAATGTGACTTGCTAGTTTGCATGTCTTTTGAGCAAATTCTTTCTTATTTCAAATGTGAGCCTTTAATAATCTTTAACGTCTTAAAATAACAATTTCCTCCCTTACATTTGTAATGTGAAAAATACTTTCATGTATAAATAGGACCACCTGACTGAACAATACGTGTCATTGTTATGGCAGTGGATAAAACACACAATATGTGTTACTCTAAACTTGTGATTTCCTTCTATAACTTGAGACCCATGGATCATCTTACCAGTGATGTATCCATATCAGTCCATGTCACAGATGATCCACGGATGACCCAATGACGATCTGACTTCAATGCTGGACCAACATTTACACCCAATTGAAAATGTAAAACTGGGAACCAAAACAAATGGCAATCACATCAATAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2640736 lncRNA upstream 10908 23048546 ~ 23051189 (+) True G2308565
TU2640735 lncRNA upstream 14623 23046225 ~ 23047474 (+) True G2308564
TU2640733 lncRNA upstream 16731 23044595 ~ 23045366 (+) False G2308563
TU2640734 lncRNA upstream 16731 23044595 ~ 23045366 (+) True G2308563
TU2640718 lncRNA upstream 32508 23029046 ~ 23029589 (+) True G2308550
TU2640742 lncRNA downstream 2872 23072617 ~ 23073062 (+) False LOC110488124
TU2640741 lncRNA downstream 4183 23073928 ~ 23074973 (+) True LOC110488124
TU2640746 lncRNA downstream 13194 23082939 ~ 23083251 (+) True G2308574
TU2640764 lncRNA downstream 34952 23104697 ~ 23104902 (+) True G2308592
TU2641078 lncRNA downstream 129259 23199004 ~ 23214535 (+) True LOC118946519
XM_021560150.2 mRNA upstream 45081 23012552 ~ 23017016 (+) False LOC110488122
XM_021560151.2 mRNA upstream 45081 23012568 ~ 23017016 (+) True LOC110488122
XM_036970698.1 mRNA upstream 56199 22991479 ~ 23005898 (+) False LOC110488120
XM_021560154.2 mRNA downstream 2772 23072517 ~ 23076040 (+) False LOC110488124
XM_021560155.2 mRNA downstream 38237 23107982 ~ 23120043 (+) True LOC110488125
XR_005041390.1 mRNA downstream 129262 23199007 ~ 23214618 (+) False LOC118946519
XM_036971022.1 mRNA downstream 230825 23300570 ~ 23469848 (+) False LOC110489408
XM_021560163.2 mRNA downstream 406029 23475774 ~ 23540812 (+) True LOC110488130
TU2640356 other upstream 457376 22604320 ~ 22604721 (+) True G2308224
TU2639980 other upstream 645805 22406017 ~ 22416292 (+) True c32h5orf49
TU2638805 other upstream 1474663 21587088 ~ 21587434 (+) True G2306825
TU2638636 other upstream 1738201 21320623 ~ 21323896 (+) True G2306688
TU2638627 other upstream 1750290 21307558 ~ 21311807 (+) True LOC110488072
TU2641501 other downstream 909605 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 909723 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other downstream 909812 23979557 ~ 23980779 (+) False LOC110488133
TU2641635 other downstream 1081942 24151687 ~ 24157436 (+) True LOC110488142
TU2644105 other downstream 2665449 25735194 ~ 25736847 (+) True G2311528

Expression Profile