RNA id: XM_021560154.2


Basic Information

Item Value
RNA id XM_021560154.2
length 2921
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110488124
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 23072517 ~ 23076040 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAGAAAAAGCATGCACTGCATGCGCACTAAGATGTTGTGGCAAAACAAGAGGCGGGTATATAAGCGACTGAACAATAGGTAAAGTAACATCATAACGACCTAATTCCTCCTTTAGATCGCTGCACATacattctctcactctctacctacctGCCTGCCGAGTGCCTACGGGGAGGTGCAGAGATGCTTCTTACCACGAGTGGGTACCAGCTTGCGCTATTTTGCCTTCTGATAAGAAGCTGTCAAGCTGTCAAGAACGGCGCCACGGAAACGTTAAACGCTCAGTTGATCAGCACGGTCCAGGATACACCGAGTAGTAATGTATCAATGAATCAAGCACGCAACGGAGGAAGACGCTTGACCAGCGATGCGAGGAAAGAGCAGGGCCAGGCACAGAGCCAGGTGGGCTGCAGAGAGCTGCGCTCCACCAAGTACATCTCAGATGGCCAGTGCACCAGCCTGAACCCGGTCAAGGAGCTGGTTTGTGCCGGGGAGTGTCTTCCCTCCCACCTACTGCCCAACTGGATCGGCTCCGGTCCCGGCTACACCGGAAAGTTCTGGAGCCGGCGGGAGGCCCAGGAGTGGCGTTGCGTCATCGACCGGACCCGGACCCAGCGCATCAGACTGCAGTGTCAGAACGGAAGCTCCAGGACCTATAAGATCACTGTGGTTACTTCCTGCAAGTGTAAACGCTACTCCAGGCAGAACAATGACTCAGGGAATGGGAAGTCAGAGGTGGAGGTCAGGCAGGCCCAGGGGCAGGGCCAGGGCCAGGGCTCCACACTCCAGGGGCccaagaggaggaagggaaaggaagggaagAATGGACCTTCTGGGCAGGAGGACTGGGCTGAAGAACAGCCTAAAAATGACTGAAAGGAGACTTCTGGTCAGGGGTGCTCTGTACACCTCTGAGGGGATGGAAGGTCTCTCTGTGCCCCCACTTAAGAAACAACTGCAGCACCAACAGACACTCGTTTTGTATAGCTGGAGCCAATGTGTTCGCTATGTTTAAAGTAGCTATATGGAGAAGGCTATGCAATGATTCTTCAGACAGTGCAACTGGTTTGCCAAATATTGACCACTGTGGATGTGTTTgtaaatgtatgtgtttttgtatgtgATAGAAGACTAGTTTGATTAGTACAAGAACCACATTAGACAACGTGAGATGAAGTGTTCCTATCAACAGCTGAGTATGTTGTCCAAATAGTCATGTTTATAATAACATAAAATGGCATGGTATGTATATAAATAGTGATTCTATACTCTTTGTGTTACTTTTCAAAGTATACTAGTAAAGAACAAGAAGGCCCTCATACTGTTAAGACTCCCAAATCATCGCTTTCTTGACAACATTTCCAACCCAAACAGATCTTCTTCTTGTCCAACAGACTGAGTGCTCACTTcccaaaatatacacatttcacctCACATGACCAAATAAGCACATGATGCATGGTGGGGGCAAAAACAATTTGTGCATCTCTAATAATGTGATATCAATGAGACGGGCACATATAGTAGTTTCAGAAAATAATATTTAGGTACAAAAGGACCAAGTAAGAGACCTGGAAGGCAAGGCAAATCAAAGTGACAAATTCATGTAAGAAAGAGTCTGATATTAAACTCTTGGTTCAGACCTTTAGGAGACATGGTACCACAACGGTGAATCCAATACAATCCTCTTCTCAGTAATAGATGATCAGTATCTCACCCCCTCCTAGGAGTCTTTACATGTTCAATACCAATGTATCTCAGAGAGCTGATGTCGTGACGAGCCTCCATGAAATACGCAGCCACAGGGTTTCTCTGTACAAGTATCCCGGTATTACTCCTGTGTTCTGATATCCTTGTTTTCAGAGTTAGGCATAGGCCACAAATACACTTGATCAGGTATATCACTTTTTTTTTGTGGAACATGCCTTTAATCCTAATGACCTTGCCCGTAATAAGGTGATTGAACATTGTGCATTTGTTCATAAAGTTACACTAGGTACATCAGCCACATCTATAATTACTTTTAAAAGTATGTAACGGATTACTATGACAATGTAATATATTTTTGTAAGGAGATAGCTAAACTTAATAGAAATAAGCTcatcttttttatatatatatttgctacATTCCATGTAATCACTTTCTGGACAAGTTGTGTCTCAAATTATTTGCCTTTGGATAATGAAATAAATATTGTCTACTATGATTAAATCACTGATTTAATATAAAAAAATGActtttctttaattatttgtataATAACAATTGATTTACTTGTCAATAAATTGTGCTTTAATCATTAGTAGTTAAATGCCTTGAGCATGAGGCCACAGGCAGAGGAGCTATAACTTCACAGCAAACAGGAAGTCAGTAACAACAGAAGCATTAGCCAGTGATGAAATGTTCTATTGAGTGTAATAGAAACTGTACTCTGTGCAGGAATCCTCTCTCCTTCAGGCTACTGGGCATGTTCCAGTCAGGAGCTACATGTTAACATACATGATTGTGTCAGATACACCTTCATTGTAATACCATGAAAGCTATATATTTAGTACTTGCAGTGCAAGTATTACGGGGAAGTTATGTCTTCCTCAAAGAGCATTGGGAACCCTTGATATTCCTAGTTAGGGGATGGCAGCTAGTTTTGGCATTAGGACAGAGTGGTTCTAAATCTGACAGCACCAGAGTGGTGTGTACCATAAGGTGGAAGAAGCATAGGGAAATCATGTCTGTGAATCTCAGAGCAGAGCTTGTGTCATTGACACAATAATACAAGGCTTGTAAAACTTCCTCTCTGTAATTGTCCCTGACAACATATTCTCCTCCTGAGTAGCAGTGATGCTATAGGACttgtaactactacctttaatttGAATTGTAACTACCACAAACACACTATGAAAAAATGCTCTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2640639 lncRNA upstream 2749 23063090 ~ 23069768 (+) True LOC110489407
TU2640740 lncRNA upstream 5855 23066253 ~ 23066662 (+) True G2308568
TU2640736 lncRNA upstream 21328 23048546 ~ 23051189 (+) True G2308565
TU2640735 lncRNA upstream 25043 23046225 ~ 23047474 (+) True G2308564
TU2640733 lncRNA upstream 27151 23044595 ~ 23045366 (+) False G2308563
TU2640746 lncRNA downstream 6899 23082939 ~ 23083251 (+) True G2308574
TU2640764 lncRNA downstream 28657 23104697 ~ 23104902 (+) True G2308592
TU2641078 lncRNA downstream 122964 23199004 ~ 23214535 (+) True LOC118946519
TU2641096 lncRNA downstream 146493 23222533 ~ 23224830 (+) True G2308873
TU2641106 lncRNA downstream 159907 23235947 ~ 23236457 (+) True G2308882
XR_005041391.1 mRNA upstream 2772 23062097 ~ 23069745 (+) False LOC110489407
XM_036971658.1 mRNA upstream 2772 23062200 ~ 23069745 (+) False LOC110489407
XR_005041392.1 mRNA upstream 2772 23063001 ~ 23069745 (+) False LOC110489407
XM_036971659.1 mRNA upstream 3438 23062213 ~ 23069079 (+) False LOC110489407
XM_021560150.2 mRNA upstream 55501 23012552 ~ 23017016 (+) False LOC110488122
XM_021560155.2 mRNA downstream 31942 23107982 ~ 23120043 (+) True LOC110488125
XR_005041390.1 mRNA downstream 122967 23199007 ~ 23214618 (+) False LOC118946519
XM_036971022.1 mRNA downstream 224530 23300570 ~ 23469848 (+) False LOC110489408
XM_021560163.2 mRNA downstream 399734 23475774 ~ 23540812 (+) True LOC110488130
XM_036971654.1 mRNA downstream 682253 23758293 ~ 23883531 (+) False LOC110488131
TU2640356 other upstream 467796 22604320 ~ 22604721 (+) True G2308224
TU2639980 other upstream 656225 22406017 ~ 22416292 (+) True c32h5orf49
TU2638805 other upstream 1485083 21587088 ~ 21587434 (+) True G2306825
TU2638636 other upstream 1748621 21320623 ~ 21323896 (+) True G2306688
TU2638627 other upstream 1760710 21307558 ~ 21311807 (+) True LOC110488072
TU2641501 other downstream 903310 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 903428 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other downstream 903517 23979557 ~ 23980779 (+) False LOC110488133
TU2641635 other downstream 1075647 24151687 ~ 24157436 (+) True LOC110488142
TU2644105 other downstream 2659154 25735194 ~ 25736847 (+) True G2311528

Expression Profile