RNA id: XM_036971022.1


Basic Information

Item Value
RNA id XM_036971022.1
length 8151
RNA type mRNA
GC content 0.53
exon number 28
gene id LOC110489408
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 23300570 ~ 23469848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagggcaAGTTCGATGGAAAGCAAGAGGGGGAGGGCAAGTGAGTGAGCGAGTgatagagcgcgagagagagagagagagagagagagagaaggagggagagagagggaggtgctgCATCAGCTCGGCACACACAGGACGCAGCAACATCAGCAGCCTCGTCTTAGAGGTCTATTGTTCCCTGTTTTCATTACGGACAGACCTCGTTGTCCCTCGCTGACCTagccaccacagagagagagagagcgagagagagagagagagagaggaggagaacccTTCATTCACCCAGGATTACTTCTTCTTAGAGGAACGTACAGAACAACCCTTGTGTGAGAAAGGGACAAAAGCAAAGGGAGCAGAGTACACTTCTCCGCTGTGTCTGCCCGCCTCCTCAGCGTGTTTTTCTGTCTCCGTTGTGTTGCCTTCTCGTCTCTTTTTCTATTTGGTTTTCTGTTATTGTGTGGATACTATCCACACGGTCCCCTTGCAAGAGCCATGGGGTTGCCCGGTGGAGTGAAGGGGATGCTGGGTGTGTGGAGGGAGTTACTTCCCTCTCACTGGAGACTGGTGCTGATCCTCTTCTGGATCTCTGGAGCCACAGAGGCACAAACTGCAGCCGACACCAAACCAACTGTCTACGTCTGGCAAACAGGTCCATGGGGCCGGTGTATGGGCAGCGAGTGTGGCCCAGGGGGCAGCCAGAGCCGGGCAGTGTGGTGCGCCCACTCTGAAGGCTGGACCACCCTTCACACCAACTGTGACCAGGCAGAGCGCCCGGAGAACCAGCAGAGCTGCTTCCACGTGTGTGACTGGCACAAAGACCTGTATGACTGGCAGCTGGGTGCCTGGAACCAGTGTGTGCCCGTGTCCATGCGAAGCACTGGGGCGCTCCAGCGGCCAGCCGTATGTACCCGCGGCGAGGAGGGCATCCAGACACGCGAGGTGGGCTGCGTCCAGAAAGCAGATGGCGTGCCCGCGGAGGATGCAGCGATTTGTGAATATTTTGAGCCCAAGCCCAGGCTGGAGCAAGCCTGTCTGATCCCGTGCCCGCGGGACTGTGTGGTCTCCCAGTTCACCCCATGGACTTCCTGTTCGAAAACGTGCGGCATGGGTCTTCAGAATCGTGTCCGTTTTGTCCTGGCGCCGCCTCTGTTCGGGGGCTCGGCCTGCCCTAAcctgacagagttccagacatGTCAGCCAGGTCCCTGCGTGGGCCCAGAGAGCCTCTATAGTCTGAGGGTGGGGTCCTGGGGTCCCTGCTCTGTACCCCTCCCTCGCACGGCCAGGCAGGCTCCCACCTTTACTCACGGTAAAGATGTGGCTCTCCCTCGCCGGCTTCGCAAGGGCAGAGAGGGTAAAGAGGGTAAAGAGGGCAGCGAGGTGCCCACCCCACGCCAGCCTCGACTGAGCAAAGAAGAAAGGATGAAAAGAAAGGAGGAAAGAAAGGAGGGGAGAAAAGGAAGACAGGCAGCCAAAGAAGGACGCAGGAAGAACAAGGAAAGAGTcaaggagagggtgagggagagagtgagggcgAGGGGGAGGGTGAAAGACCCAGAGACCAAAGAGCTGATAAAAAataagaggaacaggaacagACAGAACCGACAGGGAGGGAAGTTCTGGGACCTGCAGGTTGGATACCAGACCCGGGAGGTGACCTGTGTTCACAGGAGCGGAAACACTGACGCACTAAGCCTGTGTTCTCGGGAGTCCCTACCAGTGACCTACCAGGCCTGCGTCCTGGCCAAGGACTGTGAGGTGAGCGACTGGACCGACTGGTCGCCTTGCTCCAAGGACTGCTACGAGCTCAACGGGCCCACGGGtgagcgcacacgcacacgccGGGTACACCAGTTCCCcgtgggagaaggggaggagtgcCCCGAACTGGAGGAGAAGGAACCCTGCACCCCTCAGGGAGAAGGGGTACCCCCCTGTATTGCGTACAACTGGAAGACAACGGAGTGGACCGAGTGCAGGGTGGATATGTTGCTAAGCCAACAGGACCGTCGTCGTGGTAACCTAACTGGGCTGTGCGGGGGCGGAGTTCAGAACCATGAGGTGTACTGTGTCCAGGCAAACAGCGCCGACCCTGCCTCAAGCTCTCTCAATAGCAAAGAAGcCTCCAGGCCCGTTGATGGTGACCTGTGCCTCAGCCCGCCCCCCAACACCACCCAGCCGTGCCACATCCCCTGTCCTGTGGAGTGTGACGTGTCCTCCTGGGGTGCCTGGGGACCCTGCACCTTTGAAAACTGCCTGGACACAGCTGCCAAGAAAGGGTTCaaactgaggaagaggaggatcgtCAACGAGCCCACGGGAGGAACAGGAAGCTGCCCTCACCTGGTGGAGGCCATACCCTGTGACGAGCCCAGCTGCTATGATTGGCTGCTGGTGAAGCTGGATGAGTGTATCCCGGACAACGAGAGAGAATGTGGACCAGGCACCCAGATACCACAAGTCCAGTGTGTCAACGGGgatgGTGAGTATGTGGACCGCCAGTTATGCCGTGATGCCATCCTTCCCATGCCCGTCATCTGTGAGGTGCCTTGCCCCAAGGACTGTGTGCTCAGTCCCTGGACCACCTGGTCCCTGTGCTCACACACCTGCTCCGGGAAGAACACAGAGGGAAGGCAGATGAGAGCACGCTCTGTACTGGCCTACAGCGCTGGGGAAGGCGGGGTCCAGTGCCCCAACAGCAGTGCTCTCCAGGAGGTGCGGAGCTGCAACGACCACCCTTGTACTGTGTACCACTGGCAGACAGGGCCCTGGGGGCAGTGTATCGAGGACACCTCGGTCCCCTCTGCCAACTCCACAGGGGCTCGGGCCGGAGTTGGGGGAGGGGACTCCTCGTGCTCTGTGGGGATGCAGACACGGAAGGTCATCTGTGTACGGGTCAATGTGGGACAGGTGCCACCCAAAAAGTGTCCGGAGAGTATTCGTCCTGAGACAGTCAGGCCTTGCCTCCTGCCATGTAAAAGAGACTGCAGCGTCACCCCCTACAGCGACTGGAGCGCCTGCCCTGCCATATGCAAAGCAGGCGGCAACACGAAAAGGAAACAGAACAGGAAACGCATCATCATCCAGCTGCCGGCCAATGGGGGACAGGACTGTCCGGAGGTGTTGGCtcaggagagagactgtgaggtgccgtctgtctgtctgggatacAGGTGGAAGACACACAAGTGGCGGCGATGCCAGTTGGTTCCCTGGTCCGTGCGTCAGGACAGTCCTGGAGCTGTGGAGACTTGTGGGCCTGGGCTGCAGGCTAGAGCTGTCTCATGCCGGAAGCAAGACGGGGGTCAAGCGGACATGGGagcatgtctgaagtttgccagcTCCATGCCCTCTCTAACCCAGCCCTGCCAGCTCCCATGCCAGGACGACTGCCAGCTAACCACCTGGTCTAAGTTCTCTTCCTGTACACAGGACTGTGTGGGCGTCAAGACCCGCAAGAGGATGCTAGTGGGAAAGAGCAAAAAGCAAGACCAGTGTAAGAACACCCAGGTATACCCCCTCAGTGAGATCCAGTACTGCCCCTGTAACAAGTACAACGCCCAGCCCATGGGGAACTGGTCGGACTGCATCCTGCCTGAGGGTGGGCGTGTGGAGGGCCAGCCGGGCATGAAGGTCCAGGGGGACATCAAGGAGTGTGGCCAGGGCTACCGCTACCAGGCCATGGTGTGTTACGACCAGGACAACAGGCTGGTGGAGACGTCACGGTGCAACAGCCACGGGTATATTGAGGAGGCTTGCATCATCCCCTGTCCGTCTGACTGCAAGCTCAGTGAGTGGTCAAACTGGTCACGATGCAGCAAGTCCTGCGGCAGTGGGGTCAAAGTGCGTTCCAAGTGGCTGAGGGAGAAGCCTTACAACGGTGGTCGACCGTGCCCCAAACTGGACCATGTCAACCAGGCTCAGGTGTATGAGGTGGTGCCCTGTCTCAGTGACTGTGGTCAGTATGTGTGGGTGGCTGAACCCTGGAGTGTCTGGAAGGTCAGCAACGTGGACCTGAAGGAGAACTGTGGAGAAGGAGTGCAGACCAGAAAGGTCAGGTGTATGCAGAACACTATCAATGGGCCGTCGGACCCTGTGGAGGATTACCTGTGTGACCCAGAGGAGATGCCTCTAGGGGCCAGAGACCGCCAGCTGCCCTGCCCTGAGGACTGTGTCCTGTCTGACTGGGGGGCCTGGAGCAGCTGCTCACTGCCATGCAACAAAATCAGCACTCGGGATAGGACAGCATACCCCGTTCGTCAACCTGGAGAGGGAAAGCTGTGCCCCAACACCACAGAGACCGAGCCCTGCAGCCTCAACAGCAACTGCTATCACTACTCCTATAACATCACCGATTGGAGCACCTGTCAGCTGAGTGAGAGAGCTGTGTGTGGTAGTGGCATGAAGACACGCATGCTGGACTGTGTACGAAGCGACGGCAAGTCTGtcgacctcaagttctgtgaagAGCTGGGGCTGGACAGGAAGTGGCAGATGAACGCTTCCTGTGTTGTGGAGTGTCCCATCAACTGCCAGCTATCTGATTGGTCACCCTGGTCCGAGTGCACACAAACCTGTGGACTAGCAGgaAAGCTGTGGCGCAGGAGAATCGTGCTCCAAGTACCCCAGGGTGATGGGCGATCCTGCCCCCCTCAGAGGGAACAGTGGAAGCCTTGCCCTGTCAGACCCTgctaccaatggagatacagctCCTGGTCCGAATGCAAGTCTGAGGGTGCAAGGTGCGGAGAGGGGCTGCGGTTCCGTAACGTGTCCTGCTTTGTGTCGGACGGGTCTGGCCAGGGAGAGGGCAGTCTGGTGGATGATGAGCTGTGTGGAAACCTTGAGCCCTCGGTAGACGGCGACAAACAGATCACCCTGGAAGAACCCTGCACCTCGCCCTGTCCAGGTGACTGCTACCTGACTGACTGGACAGTGTGGAGCCCGTGTCAGCTGAGCTGTGTCAGTGGAGATGACCTGGGTTTCGGCTCAGTGCAGGTCAGATCCAGAGCCGTGCTGGCCCAGGAGCCAGAGAACCTACTGCAGTGTCCAGAACAGGAGTGGGAGGCCCGGCCCTGCACTGAGGGCCAGTGTTATGAGTACAAGTGGATGACAGGAGCGTGGAGGAGCTCCTCTCGACTGGTCTGGTGTCAGAGATCTGATGGATTAAATGTCAcagGTGGCTGCCCTATGACAGCCCAGCCCTTGGCAGACCGATCATGTGATCCAGCCTGCAACAAACCACGCTCCTTCTGCACAGAGGCGGGTGTGTGTGGTTGCGATGAGGGCTACACGGAGGTGATGACATCAGACGGCCTGCTGGACCAGTGTACGGTGATCCCTGTGTTAGAGATCCCCACGGCAGGGGACAACAGGGCTGACGTGAAGACCATCAGGGCGGTCAGCCCCACACAGCCCTCCAACAGCCTGCCTGGCCGAGCTGGACGCACCTGGTTCCTACAGCCCTTCGGACCAGATGGTAAACTGAAGACATGGGTCTACGGTGTGGCAGCTGGAGCTTTTGTTCTACTCGTCTTTATAGTCTCCATGACCTTCCTAGCCTGTAAAAAGCCAAAGAAACCCCAGAGGAGACAGATGTATAACAACCGGCTCAAGCCCCTGACCCTGGCCTATGACGGAGACGCTGACATGTGAACCTCCTAATCTACCTGTGGCAGAATAATTTTACACTGACGTCATGAAGACTGTCGTCGTGGGATCAGACAGATTGGTTGTCATGGAGACCCACCTTTGACGGTTCTTCTCAGGCTACCAGTGGGCGTGGCTTAAAATATCTGGAACTCTGGGAAGACTTACATTATGTCACTGATTTatcaataacaaaaaaaaaatgaaagtcAGACAGAAATCGAACCATGTTTGTTCATTAGTAGCCTAGAATTTTCCTCcctcaatattttttatttatttaatttttgtaTAATTTGTTTCACAAGAGCCTTCACAAACTCTATCTTCTTCTTAAGGAAGTCTGCCTTTGCTTATTTGCCATTCAGTACTTTTTCTGTCAAATAAAAACGCCTTTTGAAACAAAGGTTGTTGGAGAGGGCCCTGAAAAAACACAATGATTTTTGCTGCAAATGCATAAGTCCCTCCTTTGCTACAGGTGCtctgttgaaaatgaaatgagaaATACTCAATGCTTTTTTTTACTTTTCCTGGAGAAAATTGCTGCCTCTATTTTTGTTCTGGACTGGATCCTTTTCCctaaaaaataaaacaagaaGAAAGTGTCCTAATCTTGCAGAAATGCTGTCAACCTTTGTAGGAaatctctttctgcctctccttttctcctccgtTTTCAGGCGCAATATTGCACTATATTAGTGCAGCATGATATGTACTTATGTCTAGGAAGCTGCCTCTCTCAATACAAGATGATGTACAGTCTTGTGCTAGAAATGTCAAAAAGTAGactttttttcaaaaacaaaaacTCACCAACATTTGTTAAGAATATTTTGCTTATTTTGCTTCTTGTATGTGATATGATGGATGATAGGACGGACGATGCCAtgtaaatattatttattttgtgGGCACCACTTTACCTTTGTAGTAGTATCTGTTTTCAACTGCACttaattgagcttgcctggcgcaaTGGAGCCattggaatagtcccaaaagtgcaaaccccgcccatctgacACTCCAGGCCAGGCTCAATTAAATGCTCAAAGTGTTGGAACGAAAACAAAtactgtttgaacccaggtctgaacaTGTCTCATTctctgcctgactgactgactttatgtttgtctcctgtctctttctctgactgTTGAAGGCTTATTATGGTTAATCATTGTTTTTCCATTTAATTTATTATCTTAATTCAACATCTCAAAGTGCACTGCAGGGAATCCGGATTCCGCATGGCAGAAAAATCATATTGCTCACACCGTAAAGAAGCTAATTCAAAGAGCTGTTGAATGTTCATCGAGACACAGCAGCAATTCTATTTGATGACGCTATTGAAAGGGTGCATTTTCACAGTGCAAGAGCAATGTGATTCCTTTTTCCTACTGCGAGTTTGAATGAATATGGTCTTAGTTGTtaagacagacagaagggtgtgACTGGGTTTGTTCACAACGTCTTCTTTACCTTCTGTTACATCAGAAGAGAGAGGGTCCACTTTATATCTCGGTCTAATATCTACTGCTGTGTAACATCGTCAATCCTAACTAGAACAGCCTACTTGTATCCAAACTTCTTAGGCGTATTGCTATATACATATCATACGTGATCTCTCAACGCTCTTCATACTCAGTGTGGCTGTTACATCGGTTGAGAGATGAGTGTGACTACAATGTCTACATTAATCACTCACAGACACTTGTGCTTTGTTCGTTCTCCCTGCCTTGGTGCTATTCTATGATGGGTTATGTATTGCAAAAGCTAGATAGAATGTAGCCTAGGTAGCCACAATGACACTCCAAGGAATTCCAAGGAACAGATGCATCAAGGTCCTAGATGTCCCTCAAGCTTCTTATGCTAATGATGCAGTGACATATCTGAAGAGTCAGAGTCCTCTGTCTGAAAACAGGTTATATGCATAATATTGGCTGTGGCGGACTAGcagttggtagtgcagactgtttATTCAATGGTATAGATGGACAAACCTCATGTAAAGGAAATGAATCTGTTACAAGCGTTCCACTCCCCAGAAAACAAAGAGGGTATTGAATCGTGGTAgtagagacagacggacagacacatCATTGATCATTTTGAGGAGTCTGTTGCCAGCTAATCAAAGGAATGTTCACTTTTTTAAATGAGTTGTAAATAAATGACTGCatcatgtttttatttaatcattatttatgtattatatataaATACGTTCATTTCTTTTTTTATTGCGCAGTGTTAAGTAAAAACCTCTCGaagtgggtgcgtgcgtgcgtgcgtgtgtgcgtgcgtgcgtgtgtgtgtgtgtgtgcatgtgtgtttctgcCTATGTGTGTGTAACGTTAATGATCTTTGCTAAAGCGATACTGATGATTACCTTGTTAAAACAAAGTTGCAGAGCTCTGTCCTTTTCCTACAGGTTGTTTATATGTATCTGACCAGTTGCTGATAATAAATAAGAAAAACAAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2641106 lncRNA upstream 64113 23235947 ~ 23236457 (+) True G2308882
TU2641096 lncRNA upstream 75740 23222533 ~ 23224830 (+) True G2308873
TU2641078 lncRNA upstream 86035 23199004 ~ 23214535 (+) True LOC118946519
TU2640764 lncRNA upstream 195668 23104697 ~ 23104902 (+) True G2308592
TU2640746 lncRNA upstream 217319 23082939 ~ 23083251 (+) True G2308574
TU2641347 lncRNA downstream 185064 23654912 ~ 23658368 (+) True G2309092
TU2641455 lncRNA downstream 372923 23842771 ~ 23843517 (+) True G2309185
TU2641462 lncRNA downstream 380008 23849856 ~ 23860777 (+) True G2309190
TU2641491 lncRNA downstream 428939 23898787 ~ 23925335 (+) True G2309216
TU2641525 lncRNA downstream 449697 23919545 ~ 23921576 (+) False G2309237
XR_005041390.1 mRNA upstream 85952 23199007 ~ 23214618 (+) False LOC118946519
XM_021560155.2 mRNA upstream 180527 23107982 ~ 23120043 (+) True LOC110488125
XM_021560154.2 mRNA upstream 224530 23072517 ~ 23076040 (+) False LOC110488124
XM_036971658.1 mRNA upstream 230825 23062200 ~ 23069745 (+) False LOC110489407
XM_021560163.2 mRNA downstream 5926 23475774 ~ 23540812 (+) True LOC110488130
XM_036971654.1 mRNA downstream 288445 23758293 ~ 23883531 (+) False LOC110488131
XM_036971655.1 mRNA downstream 288447 23758295 ~ 23814145 (+) False LOC110488131
XM_036971651.1 mRNA downstream 288447 23758295 ~ 23883531 (+) False LOC110488131
XM_036971653.1 mRNA downstream 288447 23758295 ~ 23883531 (+) False LOC110488131
TU2640356 other upstream 695849 22604320 ~ 22604721 (+) True G2308224
TU2639980 other upstream 884278 22406017 ~ 22416292 (+) True c32h5orf49
TU2638805 other upstream 1713136 21587088 ~ 21587434 (+) True G2306825
TU2638636 other upstream 1976674 21320623 ~ 21323896 (+) True G2306688
TU2638627 other upstream 1988763 21307558 ~ 21311807 (+) True LOC110488072
TU2641501 other downstream 509502 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 509620 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other downstream 509709 23979557 ~ 23980779 (+) False LOC110488133
TU2641635 other downstream 681839 24151687 ~ 24157436 (+) True LOC110488142
TU2644105 other downstream 2265346 25735194 ~ 25736847 (+) True G2311528

Expression Profile